Skip to content
This repository has been archived by the owner on Apr 20, 2024. It is now read-only.

Standardise CSV reading #8

Open
vreuter opened this issue Apr 12, 2024 · 0 comments
Open

Standardise CSV reading #8

vreuter opened this issue Apr 12, 2024 · 0 comments
Labels
enhancement New feature or request

Comments

@vreuter
Copy link
Contributor

vreuter commented Apr 12, 2024

The assumed CSV structure for locus-specific points differs from the assumed CSV structure for nuclei centers/labels.

For locus-specific points, we assume:

  • no header
  • no index column
  • 3D (z, y, x)

For nuclei centers/labels, we assume:

  • header
  • index column
  • 2D (y, x)

We should standardise parsing of CSVs, and more generally abstract/generalise to parsing "records" which may come from CSV, .roi, JSON, etc.

@vreuter vreuter added the enhancement New feature or request label Apr 12, 2024
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant