analyse_log (copy).py

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon Jun 10 09:23:04 2019

@author: jorge

Takes the log generated by kilobox, and transforms it into a much more user friendly spreadsheet
-- I expect the script would work MUCH faster if it wrote a .csv, or even a clear txt file rather than .xlsx
-- the multiple sheets that a .xlsx file allows was useful, but the Kilobts could be added starting every 10
--  columns, for example rather than a new sheet. (Kilobot 1 has column 1:10, Kilboto 2 has 11:20.....).
-- Then write this to a .csv which would be MUCH faster. And would require that the matlab script read the
-- file only once.
"""
from datetime import datetime

import matplotlib.pyplot as plt

import re

import subprocess

import fire

import numpy as np

from openpyxl import Workbook

class analyse(object):
    def analyse(self, name = 0, numb = ""):#, number):
        wb = Workbook()
        if name == 0:
            dest_filename = 'log' + datetime.now().strftime('%Y-%m-%d %H:%M:%S') + '.xlsx'
        else:
            dest_filename = 'log_for_energy.xlsx' # this writes over the log each time so I can leave it running overnight without generating large logs
        def colnum_string(n):
            string = ''
            n, remainder = divmod(n, 26)
            string = chr(65 + remainder) + string # if it goes over 26
            return string

        def coord_to_cell(tup):
            string = colnum_string(tup[0]) + str(tup[1]+1)
            return string

        bots = ['1']
        WB = [wb.create_sheet('Kilobot 1', 0)]
        ws = WB[0]
        ws.cell(1,1).value = 't'
        ws.cell(1,2).value = 'X'
        ws.cell(1,3).value = 'Y'
#        ws.cell(1,4).value = 'nest'
#        ws.cell(1,5).value = 'food'
#        ws.cell(1,6).value = 'carrying'
        ws.cell(1,4).value = 'nbr bold'
        ws.cell(1,5).value = 'messages'
        ws.cell(1,6).value = 'boldness'
        ws.cell(1,7).value = 'distance'
        ws.cell(1,8).value = 'target'

        with open("test.log") as file:
            lines = file.readlines()
            list = l = [None] * (len(lines))#[]
            j = 0
            last_perc = 0
            for i in lines:
                list[j] = i #list = list + [i]
                if int(j*100/len(lines)) != last_perc:
                    print("writing list from log " + str(j) + "/" + str(len(lines)) + " " + str(int(j*100/len(lines))) + "%")
                    last_perc = int(j*100/len(lines))
                j = j + 1
            j = 0
            last_perc = 0
            #for i in list[int(3*len(list)/4)-128:int(len(list))]:
            for i in list:
                if int(j*100/len(list)) != last_perc:
                    print("formatting list into spreadsheet " + str(j) + "/" + str(len(list)) + " " + str(int(j*100/len(list))) + "%")
                    last_perc = int(j*100/len(list))
                line = i.split(',')
                for i in range(0,len(line)):
                    l = line[i]
                    line[i] = l.strip()
                # kilobot index:
                # print(line[0] + '\n')
                ind = line[0]
                ind = re.findall('\d+',ind)
                ind = ind[0]
                index = int(ind)-1
                if ind not in bots:
                    bots = bots + [ind]
                    WB = WB + [wb.create_sheet('Kilobot ' + ind, index)]
                    print(index)
                    ws = WB[index]
                    ws.cell(1,1).value = 't'
                    ws.cell(1,2).value = 'X'
                    ws.cell(1,3).value = 'Y'
                    #ws.cell(1,4).value = 'nest'
                    #ws.cell(1,5).value = 'food'
                    #ws.cell(1,6).value = 'carrying'
                    ws.cell(1,4).value = 'nbr bold'
                    ws.cell(1,5).value = 'messages'
                    ws.cell(1,6).value = 'boldness'
                    ws.cell(1,7).value = 'distance'
                    ws.cell(1,8).value = 'target'
        #            linies = linies + [l.strip()]
        #            wb.create_sheet('test', 4)
                time = line[1].split('.')
                time = time[0]
                time = int(time)+1
                ws = WB[index]
                for i in range(1,len(line)):
                    #print(line[i])
                    #print(i)
                    ws.cell(time,i).value = float(line[i])
                j = j + 1
        #            ws.title = ('Kilobot ' + ind)
                #ws2 = wb.create_sheet()
        #for i in range(number):
        #    X = []
        #    for j in range(2,len(WB[i]['B'])):
        #        X = X + [WB[i][j][2].value]
        #    Y = []
        #    for j in range(2,len(WB[i]['C'])):
        #        Y = Y + [WB[i][j][2].value]
        #    plt.plot(X,Y)

        wb.save(filename = dest_filename)


        with open("executematlab", 'w') as file:
            file.write("matlab -nodisplay -nosplash -nodesktop -r \"cd '/home/jorge/Documents/Academic/ABristol/MSc_Project/kilobox/kilobox'; draw_paths(\\\"{0}\\\", {1}); exit;\"".format(dest_filename, str(index+1)))
            file.close

        with open("executematlab_energies", 'w') as file:
            file.write("matlab -nodisplay -nosplash -nodesktop -r \"cd '/home/jorge/Documents/Academic/ABristol/MSc_Project/kilobox/kilobox'; get_energies(\\\"{0}\\\", {1}, \\\"{2}\\\"); exit;\"".format(dest_filename, str(index+1), numb))
            file.close

        #subprocess.Popen(["matlab -nodisplay -nosplash -nodesktop -r \"cd '/home/jorge/Documents/Academic/ABristol/MSc_Project/kilobox/kilobox'; draw_paths(\\\"{0}\\\", {1}); exit;\"".format(dest_filename, str(index+1))], shell=True)

        #print("You may now execute: \"matlab -nodisplay -nosplash -nodesktop -r \"cd '/home/jorge/Documents/Academic/ABristol/MSc_Project/kilobox/kilobox'; draw_paths(\\\"{0}\\\", {1}); exit;\" | tail -n +11\"".format(dest_filename, str(index+1)))

if __name__ == '__main__':
  fire.Fire(analyse)