dockerimage.yml

name: Docker Image CI

on: ["push", "workflow_dispatch"]


jobs:

  lint:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - uses: hadolint/hadolint-action@v3.1.0
      with:
        dockerfile: Dockerfile

  test:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Set up environment
      run: |
        echo "BIOMAJ_DIR=$(pwd)" > .env
        echo "BIOMAJ_DATA_DIR=$(pwd)/biomaj" >> .env
        mkdir -p biomaj biomaj/conf biomaj/log biomaj/lock biomaj/db biomaj/process biomaj/cache
        cp test-local/etc/biomaj/conf.d/alu.properties biomaj/conf/
        cp test-local/etc/biomaj/conf.d/local.properties biomaj/conf/
    - name: Validate Docker Compose configuration
      run: |
        docker compose config -q
    - name: Build Docker image
      run: |
        docker compose build --no-cache
    - name: Start Docker containers
      run: |
        docker compose up -d
    - name: Execute test script
      run: |
        sleep 20
        ./docker-test.sh local
    - name: Shut down Docker containers
      run: |
        docker compose down

  publish:
    runs-on: ubuntu-latest
    if: github.ref == 'refs/heads/master'
    steps:
    - uses: actions/checkout@v4

    - name: Log in to Docker Hub
      uses: docker/login-action@v3
      with:
        username: ${{ secrets.GHR_USER }}
        password: ${{ secrets.GHR_TOKEN }}

    - name: Extract metadata (tags, labels) for Docker
      id: meta
      uses: docker/metadata-action@v5
      with:
        images: genouest/biomaj-docker

    - name: Build and push Docker image
      uses: docker/build-push-action@v5
      with:
        context: .
        file: ./Dockerfile
        push: true
        tags: ${{ steps.meta.outputs.tags }}
        labels: ${{ steps.meta.outputs.labels }}