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R.4.3.3 package installation #69

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PedramAsef opened this issue Feb 1, 2018 · 6 comments
Open

R.4.3.3 package installation #69

PedramAsef opened this issue Feb 1, 2018 · 6 comments

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@PedramAsef
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PedramAsef commented Feb 1, 2018

Greetings,

Is there any problem to install the package for R Ver. 4.3.3?
I have problem to do this!

My R Ver. 4.3.3, and Rstudio Ver. is 1.1.419

Regards,

@PedramAsef PedramAsef changed the title tissuesGeneExpression R.4.3.3 package installation Feb 1, 2018
@PedramAsef
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In both R 4.3.3 and 3.2.2, I could install the package ( GSE5859Subset) and I checked that box in front of it in packages (in Rstudio) .But, when I would call for example tissueGeneExpression, I see the followings (maybe I am doing the procedure not correctly to call data):

library("GSE5859Subset", lib.loc="~/R/win-library/3.2")
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
table(tissue)
Error in table(tissue) : object 'tissue' not found
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found

Please guide me!
Regards

@vjcitn
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vjcitn commented Feb 2, 2018 via email

@PedramAsef
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I appreciate your swift reply!
I have copy/ paste your code in my R console, but still I can see the following errors:

--- Please select a CRAN mirror for use in this session ---
Warning: package ‘devtools’ is in use and will not be installed

library(BiocInstaller)
Error in library(BiocInstaller) :
there is no package called ‘BiocInstaller’
biocLite("genomicsclass/tissuesGeneExpression")
Error in biocLite("genomicsclass/tissuesGeneExpression") :
could not find function "biocLite"
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found

How can I go forward step by step to make sure that I am doing the procedure rightly?

Regards,

@vjcitn
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vjcitn commented Feb 2, 2018 via email

@PedramAsef
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It works now, my sincere appreciation.

Have a good one,

@Yash507
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Yash507 commented May 14, 2020

library(devtools) install_github("genomicsclassGSE5859Subset")
library(GSE5859Subset) data(GSE5859Subset)

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