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Update WGS CRAM index path #63

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jasonwalker80 opened this issue Nov 10, 2021 · 0 comments
Open

Update WGS CRAM index path #63

jasonwalker80 opened this issue Nov 10, 2021 · 0 comments

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@jasonwalker80
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qc-analysis-pipeline/SingleSampleQc.json

Line 3 in 3eec411

"SingleSampleQc.input_bam_index": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai",

It looks like the provided BAM index allows the workflow to complete. However, the correct path for the CRAM index would be:
gs://broad-public-datasets/NA12878/NA12878.cram.crai
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