diff --git a/documentation/5/.buildinfo b/documentation/5/.buildinfo
index 1284fa5c1..6939044a0 100644
--- a/documentation/5/.buildinfo
+++ b/documentation/5/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 2c4baab60789ed94dfde1315088742e7
+config: f03c42cb031d0fa577de64a58a6717cc
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/documentation/5/_downloads/1eed1518b8928bc24e721527ef1f9970/mnist_mb_classifier.ipynb b/documentation/5/_downloads/1eed1518b8928bc24e721527ef1f9970/mnist_mb_classifier.ipynb
index a61527000..2928dc2d7 100644
--- a/documentation/5/_downloads/1eed1518b8928bc24e721527ef1f9970/mnist_mb_classifier.ipynb
+++ b/documentation/5/_downloads/1eed1518b8928bc24e721527ef1f9970/mnist_mb_classifier.ipynb
@@ -35,7 +35,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.0"
+ "version": "3.8.12"
}
},
"nbformat": 4,
diff --git a/documentation/5/_downloads/26866b29b5e6aaf47b3ba4c4dbee6718/userproject_jupyter.zip b/documentation/5/_downloads/26866b29b5e6aaf47b3ba4c4dbee6718/userproject_jupyter.zip
index 6d4cf95b6..6664f33ff 100644
Binary files a/documentation/5/_downloads/26866b29b5e6aaf47b3ba4c4dbee6718/userproject_jupyter.zip and b/documentation/5/_downloads/26866b29b5e6aaf47b3ba4c4dbee6718/userproject_jupyter.zip differ
diff --git a/documentation/5/_downloads/3e0a0a579abc8e5181823f00a5779b71/userproject_python.zip b/documentation/5/_downloads/3e0a0a579abc8e5181823f00a5779b71/userproject_python.zip
index cacf56dfa..851c38301 100644
Binary files a/documentation/5/_downloads/3e0a0a579abc8e5181823f00a5779b71/userproject_python.zip and b/documentation/5/_downloads/3e0a0a579abc8e5181823f00a5779b71/userproject_python.zip differ
diff --git a/documentation/5/_downloads/64c7fcd62013f68609d54d02d741b663/potjans_microcircuit.ipynb b/documentation/5/_downloads/64c7fcd62013f68609d54d02d741b663/potjans_microcircuit.ipynb
index 008f11e6a..2ae0ae9fc 100644
--- a/documentation/5/_downloads/64c7fcd62013f68609d54d02d741b663/potjans_microcircuit.ipynb
+++ b/documentation/5/_downloads/64c7fcd62013f68609d54d02d741b663/potjans_microcircuit.ipynb
@@ -35,7 +35,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.0"
+ "version": "3.8.12"
}
},
"nbformat": 4,
diff --git a/documentation/5/_downloads/f57116a727438d4e47eb66f1b799aa48/superspike_demo.ipynb b/documentation/5/_downloads/f57116a727438d4e47eb66f1b799aa48/superspike_demo.ipynb
index 1ff964dcb..8263a6d20 100644
--- a/documentation/5/_downloads/f57116a727438d4e47eb66f1b799aa48/superspike_demo.ipynb
+++ b/documentation/5/_downloads/f57116a727438d4e47eb66f1b799aa48/superspike_demo.ipynb
@@ -35,7 +35,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.0"
+ "version": "3.8.12"
}
},
"nbformat": 4,
diff --git a/documentation/5/_sources/sg_execution_times.rst.txt b/documentation/5/_sources/sg_execution_times.rst.txt
index 4957555dd..a0875a4e2 100644
--- a/documentation/5/_sources/sg_execution_times.rst.txt
+++ b/documentation/5/_sources/sg_execution_times.rst.txt
@@ -32,12 +32,12 @@ Computation times
* - Example
- Time
- Mem (MB)
- * - :ref:`sphx_glr_userproject_mnist_mb_classifier.py` (``../userproject/mnist_mb_classifier.py``)
+ * - :ref:`sphx_glr_userproject_mnist_mb_classifier.py` (``..\userproject\mnist_mb_classifier.py``)
- 00:00.000
- 0.0
- * - :ref:`sphx_glr_userproject_potjans_microcircuit_pygenn.py` (``../userproject/potjans_microcircuit_pygenn.py``)
+ * - :ref:`sphx_glr_userproject_potjans_microcircuit.py` (``..\userproject\potjans_microcircuit.py``)
- 00:00.000
- 0.0
- * - :ref:`sphx_glr_userproject_superspike_demo.py` (``../userproject/superspike_demo.py``)
+ * - :ref:`sphx_glr_userproject_superspike_demo.py` (``..\userproject\superspike_demo.py``)
- 00:00.000
- 0.0
diff --git a/documentation/5/_sources/source/pygenn.rst.txt b/documentation/5/_sources/source/pygenn.rst.txt
index 6875f8b1b..a1937c5ce 100644
--- a/documentation/5/_sources/source/pygenn.rst.txt
+++ b/documentation/5/_sources/source/pygenn.rst.txt
@@ -73,30 +73,6 @@ pygenn.init\_var\_snippets module
:undoc-members:
:show-inheritance:
-pygenn.libgenn\_cuda\_backend\_dynamic module
----------------------------------------------
-
-.. automodule:: pygenn.libgenn_cuda_backend_dynamic
- :members:
- :undoc-members:
- :show-inheritance:
-
-pygenn.libgenn\_dynamic module
-------------------------------
-
-.. automodule:: pygenn.libgenn_dynamic
- :members:
- :undoc-members:
- :show-inheritance:
-
-pygenn.libgenn\_single\_threaded\_cpu\_backend\_dynamic module
---------------------------------------------------------------
-
-.. automodule:: pygenn.libgenn_single_threaded_cpu_backend_dynamic
- :members:
- :undoc-members:
- :show-inheritance:
-
pygenn.model\_preprocessor module
---------------------------------
diff --git a/documentation/5/_sources/userproject/mnist_mb_classifier.rst.txt b/documentation/5/_sources/userproject/mnist_mb_classifier.rst.txt
index b5e4e8cc6..1705ea0ba 100644
--- a/documentation/5/_sources/userproject/mnist_mb_classifier.rst.txt
+++ b/documentation/5/_sources/userproject/mnist_mb_classifier.rst.txt
@@ -2,7 +2,7 @@
.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "userproject/mnist_mb_classifier.py"
+.. "userproject\mnist_mb_classifier.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
diff --git a/documentation/5/_sources/userproject/potjans_microcircuit.rst.txt b/documentation/5/_sources/userproject/potjans_microcircuit.rst.txt
index 4a0be75c8..cd828a02f 100644
--- a/documentation/5/_sources/userproject/potjans_microcircuit.rst.txt
+++ b/documentation/5/_sources/userproject/potjans_microcircuit.rst.txt
@@ -2,7 +2,7 @@
.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "userproject/potjans_microcircuit.py"
+.. "userproject\potjans_microcircuit.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
diff --git a/documentation/5/_sources/userproject/superspike_demo.rst.txt b/documentation/5/_sources/userproject/superspike_demo.rst.txt
index 816c74a21..4f260b334 100644
--- a/documentation/5/_sources/userproject/superspike_demo.rst.txt
+++ b/documentation/5/_sources/userproject/superspike_demo.rst.txt
@@ -2,7 +2,7 @@
.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
-.. "userproject/superspike_demo.py"
+.. "userproject\superspike_demo.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
diff --git a/documentation/5/_static/basic.css b/documentation/5/_static/basic.css
index cfc60b86c..1506b6540 100644
--- a/documentation/5/_static/basic.css
+++ b/documentation/5/_static/basic.css
@@ -55,7 +55,7 @@ div.sphinxsidebarwrapper {
div.sphinxsidebar {
float: left;
- width: 230px;
+ width: 450px;
margin-left: -100%;
font-size: 90%;
word-wrap: break-word;
diff --git a/documentation/5/_static/classic.css b/documentation/5/_static/classic.css
index d0ed3264d..564c5bccd 100644
--- a/documentation/5/_static/classic.css
+++ b/documentation/5/_static/classic.css
@@ -38,7 +38,7 @@ div.documentwrapper {
}
div.bodywrapper {
- margin: 0 0 0 230px;
+ margin: 0 0 0 450px;
}
div.body {
diff --git a/documentation/5/bibliography.html b/documentation/5/bibliography.html
index cd0bee059..edba56e07 100644
--- a/documentation/5/bibliography.html
+++ b/documentation/5/bibliography.html
@@ -3,11 +3,11 @@
Bibliography — PyGeNN documentation
Building networks — PyGeNN documentation
set_sparse_connections() (pygenn.genn_groups.SynapseGroupMixin method)
set_values() (pygenn.model_preprocessor.ExtraGlobalParameter method)
-
- set_var_location() (pygenn.CurrentSource method)
sparse_connectivity_initialiser (pygenn.SynapseGroup property)
spike_event_recording_enabled (pygenn.NeuronGroup property)
spike_recording_data (pygenn.genn_groups.NeuronGroupMixin property)
diff --git a/documentation/5/index.html b/documentation/5/index.html
index 0cb5a5b38..97e59b4c4 100644
--- a/documentation/5/index.html
+++ b/documentation/5/index.html
@@ -3,11 +3,11 @@
PyGeNN documentation — PyGeNN documentation
Python Module Index — PyGeNN documentation
Search — PyGeNN documentation
Computation times — PyGeNN documentation
Navigation
-MNIST classification using an insect-inspired mushroom body model ../userproject/mnist_mb_classifier.py
MNIST classification using an insect-inspired mushroom body model ..\userproject\mnist_mb_classifier.py
00:00.000
0.0
sphx_glr_userproject_potjans_microcircuit_pygenn.py (../userproject/potjans_microcircuit_pygenn.py
PyGeNN implementation of local cortical microcircuit model ..\userproject\potjans_microcircuit.py
00:00.000
0.0
PyGeNN implementation of SuperSpike ../userproject/superspike_demo.py
PyGeNN implementation of SuperSpike ..\userproject\superspike_demo.py
00:00.000
0.0
Simulating networks — PyGeNN documentation
pygenn — PyGeNN documentation
pygenn.init_toeplitz_connectivity_snippets module pygenn.init_var_snippets module pygenn.libgenn_cuda_backend_dynamic module pygenn.libgenn_dynamic module pygenn.libgenn_single_threaded_cpu_backend_dynamic module pygenn.model_preprocessor module pygenn.neuron_models module pygenn.postsynaptic_models module pygenn package — PyGeNN documentation
Navigation
class pygenn. CustomUpdateVarAccess
Bases: pybind11_object
+Supported combinations of access mode and dimension for custom update variables
+The axes are defined ‘subtractively’ ie VarAccessDim::BATCH indicates that this axis should be removed
Members:
-READ_WRITE
-READ_ONLY
-READ_ONLY_SHARED
-READ_ONLY_SHARED_NEURON
-REDUCE_BATCH_SUM
-REDUCE_BATCH_MAX
-REDUCE_NEURON_SUM
-REDUCE_NEURON_MAX
+
+READ_WRITE :
+
READ_ONLY :
+
READ_ONLY_SHARED :
+
READ_ONLY_SHARED_NEURON :
+
REDUCE_BATCH_SUM :
+
REDUCE_BATCH_MAX :
+
REDUCE_NEURON_SUM :
+
REDUCE_NEURON_MAX :
+
READ_ONLY = <CustomUpdateVarAccess.READ_ONLY: 1>
@@ -681,9 +685,11 @@ Navigation
class pygenn. ParallelismHint Bases: pybind11_object
Members:
-POSTSYNAPTIC
-PRESYNAPTIC
-WORD_PACKED_BITMASK
+
+POSTSYNAPTIC :
+
PRESYNAPTIC :
+
WORD_PACKED_BITMASK :
+
POSTSYNAPTIC = <ParallelismHint.POSTSYNAPTIC: 0>
@@ -933,11 +939,11 @@ Navigation
Flags defining differnet types of synaptic matrix connectivity
Members:
-DENSE
-
BITMASK
-
SPARSE
-
PROCEDURAL
-
TOEPLITZ
+
DENSE :
+
BITMASK :
+
SPARSE :
+
PROCEDURAL :
+
TOEPLITZ :
@@ -981,13 +987,13 @@ Navigation
class pygenn. SynapseMatrixType
Bases: pybind11_object
Members:
-DENSE
-DENSE_PROCEDURALG
-BITMASK
-SPARSE
-PROCEDURAL
-PROCEDURAL_KERNELG
-TOEPLITZ
+DENSE :
+DENSE_PROCEDURALG :
+BITMASK :
+SPARSE :
+PROCEDURAL :
+PROCEDURAL_KERNELG :
+TOEPLITZ :
BITMASK = <SynapseMatrixType.BITMASK: 66>
@@ -1039,10 +1045,13 @@ Navigation
class pygenn. SynapseMatrixWeight
Bases: pybind11_object
+Flags defining different types of synaptic matrix connectivity
Members:
-INDIVIDUAL
-PROCEDURAL
-KERNEL
+
+INDIVIDUAL :
+
PROCEDURAL :
+
KERNEL :
+
INDIVIDUAL = <SynapseMatrixWeight.INDIVIDUAL: 64>
@@ -1074,11 +1083,14 @@ Navigation
class pygenn. VarAccess
Bases: pybind11_object
+Supported combinations of access mode and dimension for neuron and synapse variables
Members:
-READ_WRITE
-READ_ONLY
-READ_ONLY_DUPLICATE
-READ_ONLY_SHARED_NEURON
+
+READ_WRITE :
+
READ_ONLY :
+
READ_ONLY_DUPLICATE :
+
READ_ONLY_SHARED_NEURON :
+
READ_ONLY = <VarAccess.READ_ONLY: 33>
@@ -1115,9 +1127,12 @@ Navigation
class pygenn. VarAccessDim
Bases: pybind11_object
+Flags defining dimensions this variables has
Members:
-ELEMENT
-BATCH
+
+
BATCH = <VarAccessDim.BATCH: 64>
@@ -1145,10 +1160,10 @@ Navigation
class pygenn. VarAccessMode Bases: pybind11_object
Members:
-READ_WRITE
-READ_ONLY
-REDUCE_SUM
-REDUCE_MAX
+READ_WRITE :
+READ_ONLY :
+REDUCE_SUM :
+REDUCE_MAX :
READ_ONLY = <VarAccessMode.READ_ONLY: 1>
@@ -1185,12 +1200,16 @@ Navigation
class pygenn. VarAccessModeAttribute
Bases: pybind11_object
+Flags defining attributes of var access models
+NOTE Read-only and read-write are seperate flags rather than read and write so you can test mode & VarAccessMode::READ_ONLY
Members:
-READ_ONLY
-READ_WRITE
-REDUCE
-SUM
-MAX
+
+READ_ONLY :
+
READ_WRITE : This variable is read only
+
REDUCE : This variable is read-write
+
SUM : This variable is a reduction target
+
MAX : This variable’s reduction operation is a summation
+
MAX = <VarAccessModeAttribute.MAX: 16>
@@ -1233,11 +1252,13 @@ Navigation
class pygenn. VarLocation Bases: pybind11_object
Members:
-HOST
-DEVICE
-ZERO_COPY
-HOST_DEVICE
-HOST_DEVICE_ZERO_COPY
+
+HOST :
+
DEVICE :
+
ZERO_COPY :
+
HOST_DEVICE :
+
HOST_DEVICE_ZERO_COPY :
+
DEVICE = <VarLocation.DEVICE: 2>
@@ -2229,19 +2250,16 @@ Submodules
property generate_line_info
-
+Should line info be included in resultant executable for debugging/profiling purposes?
+
property manual_block_sizes
-
+If block size select method is set to BlockSizeSelect::MANUAL, block size to use for each kernel
+
property manual_device_id
-
+If device select method is set to DeviceSelect::MANUAL, id of device to use
+
property show_ptx_info
-
-
+Should PTX assembler information be displayed for each CUDA kernel during compilation?
-
-
-class pygenn.cuda_backend. Runtime
-Bases: StateBase
-
-
-nccl_generate_unique_id ( self : pygenn.cuda_backend.Runtime ) → None
-
-
-
-
-nccl_init_communicator ( self : pygenn.cuda_backend.Runtime arg0 : int arg1 : int ) → None
-
-
-
-
-property nccl_unique_id
-
-
-
-
-pygenn.cuda_backend. create_backend ( arg0 : pygenn._genn.ModelSpecInternal arg1 : str arg2 : pygenn._genn.PlogSeverity arg3 : pygenn.cuda_backend.Preferences ) → pygenn.cuda_backend.Backend
-
-
pygenn.current_source_models module
@@ -2444,11 +2451,6 @@ Submodules
Bases: GroupMixin
Class representing a custom connectivity update
-
-
-get_var_values ( var_name )
-
-
load ( )
@@ -2493,11 +2495,6 @@ Submodules
Bases: GroupMixin
Class representing a custom weight update
-
-
-get_var_values ( var_name )
-
-
load ( )
@@ -2521,38 +2518,6 @@ Submodules
-
-pygenn.libgenn_dynamic module
-
-
-pygenn.libgenn_single_threaded_cpu_backend_dynamic module
pygenn.model_preprocessor module
@@ -2986,11 +2909,6 @@ pygenn.libgenn_single_threaded_cpu_backend_dynamic module
-
@@ -3075,11 +2993,6 @@ pygenn.libgenn_single_threaded_cpu_backend_dynamic module
-
@@ -3584,23 +3497,12 @@ pygenn.libgenn_single_threaded_cpu_backend_dynamic module