From f796511d88160005b6af6b3a12a8f036927b53f6 Mon Sep 17 00:00:00 2001
From: Lukas Forer <lukas.forer@i-med.ac.at>
Date: Sat, 25 May 2024 15:59:22 +0200
Subject: [PATCH] Add docker action to build image

---
 .github/workflows/ci-tests.yml | 12 +++++++++---
 01-sharding.sh                 | 20 --------------------
 2 files changed, 9 insertions(+), 23 deletions(-)
 delete mode 100755 01-sharding.sh

diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml
index 06c59fa..971abb5 100644
--- a/.github/workflows/ci-tests.yml
+++ b/.github/workflows/ci-tests.yml
@@ -30,9 +30,15 @@ jobs:
         run: |
           wget -qO- https://code.askimed.com/install/nf-test | bash  -s 0.9.0-rc2
           sudo mv nf-test /usr/local/bin/
-          
-      - name: Build Docker 
-        run:  docker build -t genepi/nf-gwas .
+
+      - name: Build Docker
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          push: false
+          tags: "genepi/nf-gwas"
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
 
       - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
         run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }}
diff --git a/01-sharding.sh b/01-sharding.sh
deleted file mode 100755
index 59c415f..0000000
--- a/01-sharding.sh
+++ /dev/null
@@ -1,20 +0,0 @@
-#!/bin/bash
-
-mkdir -p experiments
-
-/Users/lukfor/Development/git/nf-test/target/nf-test-0.8.4/nf-test test --csv experiments/baseline.times.txt
-
-chunks=5
-for i in $(seq 1 $chunks)
-do
-    echo "Run shard ${i}..."
-    /Users/lukfor/Development/git/nf-test/target/nf-test-0.8.4/nf-test test --csv experiments/shard.${i}.none.txt --shard ${i}/${chunks} --shard-strategy "none"
-    csvtk mutate2 -n shard  -e "${i}" experiments/shard.${i}.none.txt | csvtk mutate2 -n strategy  -e "'none'" > experiments/shard.${i}.none.final.txt
-
-    /Users/lukfor/Development/git/nf-test/target/nf-test-0.8.4/nf-test test --csv experiments/shard.${i}.rr.txt --shard ${i}/${chunks} --shard-strategy "round-robin"
-    csvtk mutate2 -n shard  -e "${i}" experiments/shard.${i}.rr.txt | csvtk mutate2 -n strategy  -e "'round-robin'" > experiments/shard.${i}.rr.final.txt
-
-
-done
-
-csvtk concat experiments/*.final.txt > experiments/shard.times.txt