diff --git a/topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.md b/topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.md index 624b8398823786..e787fc6343ccb3 100644 --- a/topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.md +++ b/topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.md @@ -94,7 +94,9 @@ We start the MaxQuant run with TMT parameters for MS2 based reporter quantitatio > - {% icon param-file %} *"Specify an experimental design template"*: `experimental design template` > - In *"Parameter Group"*: > - {% icon param-collection %} *"Infiles"*: `MFA380.raw` `MFA381.raw` `MFA382.raw` `MFA383.raw` `MFA384.raw` `MFA385.raw` `MFA386.raw` `MFA387.raw` `MFA388.raw` `MFA389.raw` `MFA390.raw` `MFA391.raw` -> - *"Quantitation Methods"*: `reporter ion MS2` +> - *"variable Modifications"*: `Oxidation (M)` `Acetyl (Protein N-term)` +> - *"enzyme"*: `Trypsin/P` +> - *"Quantitation Methods"*: `reporter ion MS2` > - *"isobaric labeling"*: `TMT11plex` > - *"Filter by PIF"*: `Yes` > - *"Generate PTXQC (proteomics quality control pipeline) report? (experimental setting)"*: `Yes`