From 7c342501dc9da801e1dc877dc509add8a1281194 Mon Sep 17 00:00:00 2001
From: Nate Coraor <nate@bx.psu.edu>
Date: Wed, 20 Nov 2024 22:34:24 -0500
Subject: [PATCH] Add extract_genomic_dna_utils.py to Extract Genomic DNA
 required_files for Pulsar

---
 tools/extract_genomic_dna/extract_genomic_dna.xml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/tools/extract_genomic_dna/extract_genomic_dna.xml b/tools/extract_genomic_dna/extract_genomic_dna.xml
index 88ac3fb421c..50716b6a7a4 100644
--- a/tools/extract_genomic_dna/extract_genomic_dna.xml
+++ b/tools/extract_genomic_dna/extract_genomic_dna.xml
@@ -1,10 +1,13 @@
-<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2">
+<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy3">
     <description>using coordinates from assembled/unassembled genomes</description>
     <requirements>
         <requirement type="package" version="0.7.1">bx-python</requirement>
         <requirement type="package" version="1.13.0">six</requirement>
         <requirement type="package" version="377">ucsc-fatotwobit</requirement>
     </requirements>
+    <required_files>
+        <include path="extract_genomic_dna_utils.py" />
+    </required_files>
     <command detect_errors="exit_code"><![CDATA[
 #set genome = $input.metadata.dbkey
 #set datatype = $input.datatype