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$ ag discover_datasets.*format.*,
tools/srst2/srst2.xml
200: <discover_datasets pattern="(?P<designation>.+)" directory="geneTypingOutput" format="txt,tabular"/>
srst2 is the only tool to use a format with a , which seems incorrect, as the file gets marked 'binary or unknown' in galaxy even though it's a plain old tabular file.
For me the results are tabular but I'm not very familiar with this tool so I'm guessing that txt was there for a reason.
@bernt-matthias perhaps this is something that should be linted against? The XSD does not have a problem with a comma there (or maybe the case where a format has a comma in the name is permitted? though that would be confusing.)
The text was updated successfully, but these errors were encountered:
srst2 is the only tool to use a format with a
,
which seems incorrect, as the file gets marked 'binary or unknown' in galaxy even though it's a plain old tabular file.For me the results are tabular but I'm not very familiar with this tool so I'm guessing that
txt
was there for a reason.@bernt-matthias perhaps this is something that should be linted against? The XSD does not have a problem with a comma there (or maybe the case where a format has a comma in the name is permitted? though that would be confusing.)
The text was updated successfully, but these errors were encountered: