From 60d485dd3eb08956f38b7345e3f1e3b71c019bda Mon Sep 17 00:00:00 2001 From: Pavankumar Videm Date: Thu, 15 Aug 2024 17:07:21 +0200 Subject: [PATCH] add rank_genes_groups_tracksplot and update some other params --- tools/scanpy/remove_confounders.xml | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/tools/scanpy/remove_confounders.xml b/tools/scanpy/remove_confounders.xml index 77f6df9687d..0fc9b8e9a43 100644 --- a/tools/scanpy/remove_confounders.xml +++ b/tools/scanpy/remove_confounders.xml @@ -76,6 +76,7 @@ sc.pp.combat( adata, key='$method.key', inplace=True) +<<<<<<< HEAD #else if str($method.method) == 'external.pp.bbknn': sc.external.pp.bbknn( @@ -136,6 +137,8 @@ sc.external.pp.scanorama_integrate( approx=$method.approx, alpha=$method.alpha, batch_size=$method.batch_size) +======= +>>>>>>> a567b2ac1 (add rank_genes_groups_tracksplot and update some other params) #end if @CMD_anndata_write_outputs@ @@ -148,9 +151,12 @@ sc.external.pp.scanorama_integrate( +<<<<<<< HEAD +======= +>>>>>>> a567b2ac1 (add rank_genes_groups_tracksplot and update some other params) @@ -198,6 +204,7 @@ sc.external.pp.scanorama_integrate( +<<<<<<< HEAD @@ -266,6 +273,8 @@ sc.external.pp.scanorama_integrate( +======= +>>>>>>> a567b2ac1 (add rank_genes_groups_tracksplot and update some other params)