From 220cd5a2fb14413a821a6c1c5d1162b36a3befb1 Mon Sep 17 00:00:00 2001 From: hugolefeuvre Date: Tue, 19 Nov 2024 15:20:13 +0100 Subject: [PATCH] delete useless files and parameters + last tests --- .../data_manager_mmseqs2_download.xml | 14 - ...eqs2_aminoacid_taxonomy_databases.loc.test | 1 + ...qs2_nucleotide_taxonomy_databases.loc.test | 1 + .../mmseqs2_easy_taxonomy_assignment.xml | 606 -- tools/mmseqs2/test-data/result_krona_report | 6620 ----------------- tools/mmseqs2/test-data/result_lca.tsv | 503 -- tools/mmseqs2/test-data/result_report | 344 - tools/mmseqs2/test-data/result_tophit_aln | 498 -- tools/mmseqs2/test-data/result_tophit_report | 388 - 9 files changed, 2 insertions(+), 8973 deletions(-) delete mode 100644 tools/mmseqs2/mmseqs2_easy_taxonomy_assignment.xml delete mode 100644 tools/mmseqs2/test-data/result_krona_report delete mode 100644 tools/mmseqs2/test-data/result_lca.tsv delete mode 100644 tools/mmseqs2/test-data/result_report delete mode 100644 tools/mmseqs2/test-data/result_tophit_aln delete mode 100644 tools/mmseqs2/test-data/result_tophit_report diff --git a/data_managers/data_manager_mmseqs2_database/data_manager/data_manager_mmseqs2_download.xml b/data_managers/data_manager_mmseqs2_database/data_manager/data_manager_mmseqs2_download.xml index 29d24656cb7..f4d7ea0d3cf 100644 --- a/data_managers/data_manager_mmseqs2_database/data_manager/data_manager_mmseqs2_download.xml +++ b/data_managers/data_manager_mmseqs2_database/data_manager/data_manager_mmseqs2_download.xml @@ -5,20 +5,6 @@ 0 6f452 @TOOL_VERSION@.@COMMIT@ - - - - - - - - - - - - - - mmseqs2 diff --git a/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_aminoacid_taxonomy_databases.loc.test b/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_aminoacid_taxonomy_databases.loc.test index 3e987745d7a..ded86916027 100644 --- a/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_aminoacid_taxonomy_databases.loc.test +++ b/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_aminoacid_taxonomy_databases.loc.test @@ -1,2 +1,3 @@ UniProtKB/Swiss-Prot-15.6f452-15112024 UniProtKB/Swiss-Prot 15112024 /tmp/tmp5_ppo41w/galaxy-dev/tool-data/Swiss-Prot 15.6f452 UniProtKB/Swiss-Prot-15.6f452-18112024 UniProtKB/Swiss-Prot 18112024 /tmp/tmpm3q21te0/galaxy-dev/tool-data/Swiss-Prot 15.6f452 +UniProtKB/Swiss-Prot-15.6f452-19112024 UniProtKB/Swiss-Prot 19112024 /tmp/tmprct41jv5/galaxy-dev/tool-data/Swiss-Prot 15.6f452 diff --git a/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_nucleotide_taxonomy_databases.loc.test b/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_nucleotide_taxonomy_databases.loc.test index 8dc697a1991..69989824fab 100644 --- a/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_nucleotide_taxonomy_databases.loc.test +++ b/data_managers/data_manager_mmseqs2_database/test-data/mmseqs2_nucleotide_taxonomy_databases.loc.test @@ -1 +1,2 @@ SILVA-15.6f452-18112024 SILVA 18112024 /tmp/tmpm3q21te0/galaxy-dev/tool-data/SILVA 15.6f452 +SILVA-15.6f452-19112024 SILVA 19112024 /tmp/tmprct41jv5/galaxy-dev/tool-data/SILVA 15.6f452 diff --git a/tools/mmseqs2/mmseqs2_easy_taxonomy_assignment.xml b/tools/mmseqs2/mmseqs2_easy_taxonomy_assignment.xml deleted file mode 100644 index b8a2d81cc5a..00000000000 --- a/tools/mmseqs2/mmseqs2_easy_taxonomy_assignment.xml +++ /dev/null @@ -1,606 +0,0 @@ - - - Assigns taxonomic labels to sequences by comparing them to a reference database and identifying the lowest common ancestor - - - macro.xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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- - - - output_files['output_selection'] and "file_lca" in output_files['output_selection'] - - - - - - output_files['output_selection'] and "file_report" in output_files['output_selection'] - - - output_files['output_selection'] and "file_tophit_aln" in output_files['output_selection'] - - - output_files['output_selection'] and "file_tophit_report" in output_files['output_selection'] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ... | [options]* - -* Add taxonomic labels to sequence DB - *mmseqs createtaxdb [options]* - -* Filter taxonomy sequence database - *mmseqs filtertaxseqdb [options]* - -* Taxonomy assignment by computing the lowest common ancestor of homologs - *mmseqs taxonomy [options]* - -* Convert result DB to tab-separated flat file - *mmseqs createtsv [] [options]* - -* Create a taxonomy report in Kraken or Krona format - *mmseqs taxonomyreport [options]* - -By Martin Steinegger & Milot Mirdita & Florian Breitwieser & Eli Levy Karin - ------ - -**References** - -- Steinegger M, Soding J: MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology, 35(11), 1026-1028 (2017) -- Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, btab184 (2021) - ]]> - - \ No newline at end of file diff --git a/tools/mmseqs2/test-data/result_krona_report b/tools/mmseqs2/test-data/result_krona_report deleted file mode 100644 index 5ba0b7c2d39..00000000000 --- a/tools/mmseqs2/test-data/result_krona_report +++ /dev/null @@ -1,6620 +0,0 @@ - - - - - - - - - - - - - -
- - - magnitude - - - kt - - -50364974914654353002902501908787876965225151543331111731111131111111186666611111111153222252222221211111111064840282812221111111161615111110221111117766622222222221111111111111111111186222222111111111111154111111112222211111111113544433333111155333331111111122211111144422111122222222222221111111111111113766655555554444333311111111112222222222222222222111111112111111644444444442222222222
\ No newline at end of file diff --git a/tools/mmseqs2/test-data/result_lca.tsv b/tools/mmseqs2/test-data/result_lca.tsv deleted file mode 100644 index 2eaad598c1f..00000000000 --- a/tools/mmseqs2/test-data/result_lca.tsv +++ /dev/null @@ -1,503 +0,0 @@ -MYSTERY.31 284812 strain Schizosaccharomyces pombe 972h- 1 1 1 1.000 -MYSTERY.31 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.33 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.33 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.34 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.35 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.35 329 species Ralstonia pickettii 1 1 1 1.000 -MYSTERY.35 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.51 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.51 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.99 292 species Burkholderia cepacia 1 1 1 1.000 -MYSTERY.99 292 species Burkholderia cepacia 1 1 1 1.000 -MYSTERY.25 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.25 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.26 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.26 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.27 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.27 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.27 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.28 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.87 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.87 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.89 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.89 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.89 1075 species Fuscovulum blasticum 1 1 1 1.000 -MYSTERY.90 420662 strain Methylibium petroleiphilum PM1 1 1 1 1.000 -MYSTERY.91 0 no rank unclassified 1 0 0 0.000 -MYSTERY.107 243233 strain Methylococcus capsulatus str. Bath 1 1 1 1.000 -MYSTERY.107 395019 strain Burkholderia multivorans ATCC 17616 1 1 1 1.000 -MYSTERY.108 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.120 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.120 596154 strain Alicycliphilus denitrificans K601 1 1 1 1.000 -MYSTERY.121 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.121 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.121 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.121 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.82 482957 species Burkholderia lata 1 1 1 1.000 -MYSTERY.82 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.82 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.83 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.103 3028117 class Cyanophyceae 1 1 1 1.000 -MYSTERY.103 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.105 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.106 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.138 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.138 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.140 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.140 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.140 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.141 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.251 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.252 1773 species Mycobacterium tuberculosis 1 1 1 1.000 -MYSTERY.252 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.252 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.253 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.254 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.254 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.254 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.254 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.255 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.108 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.109 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.109 0 no rank unclassified 1 0 0 0.000 -MYSTERY.109 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.109 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.110 712 family Pasteurellaceae 1 1 1 1.000 -MYSTERY.110 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.110 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.110 977880 strain Cupriavidus taiwanensis LMG 19424 1 1 1 1.000 -MYSTERY.111 28211 class Alphaproteobacteria 1 1 1 1.000 -MYSTERY.204 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.61 977880 strain Cupriavidus taiwanensis LMG 19424 1 1 1 1.000 -MYSTERY.62 329 species Ralstonia pickettii 1 1 1 1.000 -MYSTERY.62 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.62 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.62 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.62 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.64 780 genus Rickettsia 1 1 1 1.000 -MYSTERY.64 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.65 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.41 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.41 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.42 235909 strain Geobacillus kaustophilus HTA426 1 1 1 1.000 -MYSTERY.42 398578 strain Delftia acidovorans SPH-1 1 1 1 1.000 -MYSTERY.42 80864 family Comamonadaceae 1 1 1 1.000 -MYSTERY.43 224308 strain Bacillus subtilis subsp. subtilis str. 168 1 1 1 1.000 -MYSTERY.43 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.43 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.44 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.44 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.222 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.223 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.223 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.223 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.223 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.224 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.225 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.225 1111708 no rank Synechocystis sp. PCC 6803 substr. Kazusa 1 1 1 1.000 -MYSTERY.225 2759 superkingdom Eukaryota 1 1 1 1.000 -MYSTERY.99 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.45 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.45 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.45 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.45 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.127 402612 strain Flavobacterium psychrophilum JIP02/86 1 1 1 1.000 -MYSTERY.128 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.128 62977 strain Acinetobacter baylyi ADP1 1 1 1 1.000 -MYSTERY.128 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.128 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.128 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.147 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.148 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.148 87882 species group Burkholderia cepacia complex 1 1 1 1.000 -MYSTERY.148 117571 clade Euteleostomi 1 1 1 1.000 -MYSTERY.148 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.149 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.149 31989 family Paracoccaceae 1 1 1 1.000 -MYSTERY.149 31989 family Paracoccaceae 1 1 1 1.000 -MYSTERY.149 571 species Klebsiella oxytoca 1 1 1 1.000 -MYSTERY.150 200644 order Flavobacteriales 1 1 1 1.000 -MYSTERY.197 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.198 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.198 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.198 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.198 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.237 264198 strain Cupriavidus pinatubonensis JMP134 1 1 1 1.000 -MYSTERY.237 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.237 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.239 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.239 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.65 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.65 381666 strain Cupriavidus necator H16 1 1 1 1.000 -MYSTERY.112 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.113 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.114 39008 no rank Tick-borne powassan virus (strain lb) 1 1 1 1.000 -MYSTERY.114 39008 no rank Tick-borne powassan virus (strain lb) 1 1 1 1.000 -MYSTERY.114 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.116 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.163 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.164 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.58 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.59 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.59 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.60 0 no rank unclassified 1 0 0 0.000 -MYSTERY.60 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.60 381666 strain Cupriavidus necator H16 1 1 1 1.000 -MYSTERY.61 543728 strain Variovorax paradoxus S110 1 1 1 1.000 -MYSTERY.102 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.103 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.103 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.71 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.71 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.72 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.72 159087 strain Dechloromonas aromatica RCB 1 1 1 1.000 -MYSTERY.72 243233 strain Methylococcus capsulatus str. Bath 1 1 1 1.000 -MYSTERY.72 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.72 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.74 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.75 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.76 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.6 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.7 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.8 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.8 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.200 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.202 83263 species Aminobacter aminovorans 1 1 1 1.000 -MYSTERY.202 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.202 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.204 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.204 3702 species Arabidopsis thaliana 1 1 1 1.000 -MYSTERY.151 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.152 1783272 kingdom Bacillati 1 1 1 1.000 -MYSTERY.153 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.185 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.185 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.186 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.186 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.186 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.186 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.187 136849 species group Pseudomonas syringae group 1 1 1 1.000 -MYSTERY.156 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.157 810 genus Chlamydia 1 1 1 1.000 -MYSTERY.157 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.158 0 no rank unclassified 1 0 0 0.000 -MYSTERY.158 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.158 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.15 266834 strain Sinorhizobium meliloti 1021 1 1 1 1.000 -MYSTERY.15 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.15 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.16 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.206 286 genus Pseudomonas 1 1 1 1.000 -MYSTERY.206 1903414 family Morganellaceae 1 1 1 1.000 -MYSTERY.210 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.92 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.92 242619 strain Porphyromonas gingivalis W83 1 1 1 1.000 -MYSTERY.93 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.93 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.93 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.93 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.93 106589 genus Cupriavidus 1 1 1 1.000 -MYSTERY.247 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.247 977880 strain Cupriavidus taiwanensis LMG 19424 1 1 1 1.000 -MYSTERY.250 1963268 family Haloarculaceae 1 1 1 1.000 -MYSTERY.250 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.251 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.36 448385 strain Sorangium cellulosum So ce56 1 1 1 1.000 -MYSTERY.36 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.36 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.36 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.37 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.112 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.112 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.112 216591 strain Burkholderia cenocepacia J2315 1 1 1 1.000 -MYSTERY.122 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.122 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.123 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.123 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.123 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.123 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.124 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.83 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.84 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.84 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.84 32524 clade Amniota 1 1 1 1.000 -MYSTERY.86 3702 species Arabidopsis thaliana 1 1 1 1.000 -MYSTERY.86 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.226 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.226 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.227 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.227 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.39 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.40 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.40 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.143 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.143 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.144 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.144 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.144 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.144 1437010 clade Boreoeutheria 1 1 1 1.000 -MYSTERY.146 381666 strain Cupriavidus necator H16 1 1 1 1.000 -MYSTERY.54 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.55 517 genus Bordetella 1 1 1 1.000 -MYSTERY.55 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.55 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.231 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.232 1028307 strain Klebsiella aerogenes KCTC 2190 1 1 1 1.000 -MYSTERY.232 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.234 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.235 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.236 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.228 80864 family Comamonadaceae 1 1 1 1.000 -MYSTERY.228 224308 strain Bacillus subtilis subsp. subtilis str. 168 1 1 1 1.000 -MYSTERY.229 28216 class Betaproteobacteria 2 2 2 1.000 -MYSTERY.229 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.230 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.230 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.230 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.230 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.230 269796 strain Rhodospirillum rubrum ATCC 11170 1 1 1 1.000 -MYSTERY.20 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.71 28211 class Alphaproteobacteria 1 1 1 1.000 -MYSTERY.168 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.172 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.217 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.217 285 species Comamonas testosteroni 1 1 1 1.000 -MYSTERY.218 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.218 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.219 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.220 269796 strain Rhodospirillum rubrum ATCC 11170 1 1 1 1.000 -MYSTERY.222 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.179 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.179 83263 species Aminobacter aminovorans 1 1 1 1.000 -MYSTERY.180 106590 species Cupriavidus necator 1 1 1 1.000 -MYSTERY.180 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.180 242619 strain Porphyromonas gingivalis W83 1 1 1 1.000 -MYSTERY.181 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.183 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.5 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.5 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.6 13373 species Burkholderia mallei 1 1 1 1.000 -MYSTERY.38 2975441 family Sphaerotilaceae 1 1 1 1.000 -MYSTERY.38 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.38 1437010 clade Boreoeutheria 1 1 1 1.000 -MYSTERY.38 1437010 clade Boreoeutheria 1 1 1 1.000 -MYSTERY.38 303 species Pseudomonas putida 1 1 1 1.000 -MYSTERY.38 266 species Paracoccus denitrificans 1 1 1 1.000 -MYSTERY.38 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.38 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.39 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.39 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.10 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.10 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.12 2759 superkingdom Eukaryota 1 1 1 1.000 -MYSTERY.12 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.12 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.14 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.14 80864 family Comamonadaceae 1 1 1 1.000 -MYSTERY.76 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.77 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.77 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.20 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.20 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.21 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.21 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.22 160488 strain Pseudomonas putida KT2440 1 1 1 1.000 -MYSTERY.22 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.22 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.23 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.46 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.46 111527 species group pseudomallei group 1 1 1 1.000 -MYSTERY.243 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.243 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.244 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.245 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.245 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.246 258594 strain Rhodopseudomonas palustris CGA009 1 1 1 1.000 -MYSTERY.246 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.246 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.246 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.246 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.193 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.193 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.194 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.194 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.194 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.194 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.195 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.196 438753 strain Azorhizobium caulinodans ORS 571 1 1 1 1.000 -MYSTERY.197 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.197 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.174 32008 genus Burkholderia 1 1 1 1.000 -MYSTERY.175 224308 strain Bacillus subtilis subsp. subtilis str. 168 1 1 1 1.000 -MYSTERY.176 394 strain Sinorhizobium fredii NGR234 1 1 1 1.000 -MYSTERY.177 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.177 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.178 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.178 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.178 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.178 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.178 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.134 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.134 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.136 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.136 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.136 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.137 44689 species Dictyostelium discoideum 1 1 1 1.000 -MYSTERY.246 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.247 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.247 644 species Aeromonas hydrophila 1 1 1 1.000 -MYSTERY.247 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.16 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.16 62977 strain Acinetobacter baylyi ADP1 1 1 1 1.000 -MYSTERY.17 9 species Buchnera aphidicola 1 1 1 1.000 -MYSTERY.18 246200 strain Ruegeria pomeroyi DSS-3 1 1 1 1.000 -MYSTERY.19 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.19 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.20 28216 class Betaproteobacteria 1 1 1 1.000 -MYSTERY.174 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.174 2 superkingdom Bacteria 1 1 1 1.000 -MYSTERY.174 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.48 2759 superkingdom Eukaryota 1 1 1 1.000 -MYSTERY.48 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.49 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.50 0 no rank unclassified 1 0 0 0.000 -MYSTERY. 562 species Escherichia coli 1 1 1 1.000 -MYSTERY. 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY. 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.2 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.2 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.2 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.76 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.76 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.189 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.190 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.190 292 species Burkholderia cepacia 1 1 1 1.000 -MYSTERY.190 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.190 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.191 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.191 316 species Stutzerimonas stutzeri 1 1 1 1.000 -MYSTERY.192 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.125 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.125 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.126 395495 strain Leptothrix cholodnii SP-6 1 1 1 1.000 -MYSTERY.159 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.159 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.159 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.160 572477 strain Allochromatium vinosum DSM 180 1 1 1 1.000 -MYSTERY.160 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.161 44013 genus Polynucleobacter 1 1 1 1.000 -MYSTERY.163 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.141 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.141 418699 species Azoarcus olearius 1 1 1 1.000 -MYSTERY.141 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.142 267747 strain Cutibacterium acnes KPA171202 1 1 1 1.000 -MYSTERY.142 267747 strain Cutibacterium acnes KPA171202 1 1 1 1.000 -MYSTERY.211 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.213 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.214 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.214 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.214 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.239 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.240 75682 family Oxalobacteraceae 1 1 1 1.000 -MYSTERY.240 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.240 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.241 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.242 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.242 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.242 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.242 91347 order Enterobacterales 1 1 1 1.000 -MYSTERY.243 1883 genus Streptomyces 1 1 1 1.000 -MYSTERY.165 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.165 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.165 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.167 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.167 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.167 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.167 266265 strain Paraburkholderia xenovorans LB400 1 1 1 1.000 -MYSTERY.167 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.168 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.168 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.78 428406 strain Ralstonia pickettii 12D 1 1 1 1.000 -MYSTERY.78 428406 strain Ralstonia pickettii 12D 1 1 1 1.000 -MYSTERY.80 208964 strain Pseudomonas aeruginosa PAO1 1 1 1 1.000 -MYSTERY.80 2157 superkingdom Archaea 1 1 1 1.000 -MYSTERY.80 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.81 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.154 338 genus Xanthomonas 1 1 1 1.000 -MYSTERY.155 28211 class Alphaproteobacteria 1 1 1 1.000 -MYSTERY.156 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.156 190650 strain Caulobacter vibrioides CB15 1 1 1 1.000 -MYSTERY.66 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.67 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.67 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.68 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.68 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.69 267747 strain Cutibacterium acnes KPA171202 1 1 1 1.000 -MYSTERY.70 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.70 420662 strain Methylibium petroleiphilum PM1 1 1 1 1.000 -MYSTERY.70 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.71 287 species Pseudomonas aeruginosa 1 1 1 1.000 -MYSTERY.3 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.3 397945 strain Paracidovorax citrulli AAC00-1 1 1 1 1.000 -MYSTERY.3 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.3 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.4 543 family Enterobacteriaceae 1 1 1 1.000 -MYSTERY.4 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.40 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.40 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.40 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.40 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.187 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.188 272560 strain Burkholderia pseudomallei K96243 1 1 1 1.000 -MYSTERY.189 33213 clade Bilateria 1 1 1 1.000 -MYSTERY.56 1239 phylum Bacillota 1 1 1 1.000 -MYSTERY.56 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.56 243277 strain Vibrio cholerae O1 biovar El Tor str. N16961 1 1 1 1.000 -MYSTERY.57 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.58 106589 genus Cupriavidus 1 1 1 1.000 -MYSTERY.58 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.58 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.28 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.28 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.28 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.28 266264 strain Cupriavidus metallidurans CH34 1 1 1 1.000 -MYSTERY.28 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.28 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.29 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.29 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.86 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.86 402626 strain Ralstonia pickettii 12J 1 1 1 1.000 -MYSTERY.129 39008 no rank Tick-borne powassan virus (strain lb) 1 1 1 1.000 -MYSTERY.129 39008 no rank Tick-borne powassan virus (strain lb) 1 1 1 1.000 -MYSTERY.130 83333 strain Escherichia coli K-12 1 1 1 1.000 -MYSTERY.130 810 genus Chlamydia 1 1 1 1.000 -MYSTERY.131 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.131 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.132 71421 strain Haemophilus influenzae Rd KW20 1 1 1 1.000 -MYSTERY.133 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.133 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.133 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.51 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.51 10359 no rank Human betaherpesvirus 5 1 1 1 1.000 -MYSTERY.51 10359 no rank Human betaherpesvirus 5 1 1 1 1.000 -MYSTERY.53 1224 phylum Pseudomonadota 1 1 1 1.000 -MYSTERY.53 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.53 0 no rank unclassified 1 0 0 0.000 -MYSTERY.53 257310 strain Bordetella bronchiseptica RB50 1 1 1 1.000 -MYSTERY.53 257310 strain Bordetella bronchiseptica RB50 1 1 1 1.000 -MYSTERY.53 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.54 264462 strain Bdellovibrio bacteriovorus HD100 1 1 1 1.000 -MYSTERY.95 131567 no rank cellular organisms 1 1 1 1.000 -MYSTERY.95 1236 class Gammaproteobacteria 1 1 1 1.000 -MYSTERY.96 562 species Escherichia coli 1 1 1 1.000 -MYSTERY.118 80840 order Burkholderiales 1 1 1 1.000 -MYSTERY.118 85698 species Achromobacter xylosoxidans 1 1 1 1.000 -MYSTERY.118 85698 species Achromobacter xylosoxidans 1 1 1 1.000 -MYSTERY.118 395495 strain Leptothrix cholodnii SP-6 1 1 1 1.000 -MYSTERY.119 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.119 48736 genus Ralstonia 1 1 1 1.000 -MYSTERY.120 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.215 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 -MYSTERY.215 119060 family Burkholderiaceae 1 1 1 1.000 -MYSTERY.215 267608 strain Ralstonia pseudosolanacearum GMI1000 1 1 1 1.000 diff --git a/tools/mmseqs2/test-data/result_report b/tools/mmseqs2/test-data/result_report deleted file mode 100644 index b51df08dda2..00000000000 --- a/tools/mmseqs2/test-data/result_report +++ /dev/null @@ -1,344 +0,0 @@ -1.1928 6 6 no rank 0 unclassified -98.8072 497 0 no rank 1 root -97.6143 491 11 no rank 131567 cellular organisms -92.4453 465 9 superkingdom 2 Bacteria -86.4811 435 11 phylum 1224 Pseudomonadota -59.6421 300 8 class 28216 Betaproteobacteria -57.6541 290 11 order 80840 Burkholderiales -49.7018 250 22 family 119060 Burkholderiaceae -37.7734 190 34 genus 48736 Ralstonia -17.2962 87 0 species group 3116862 Ralstonia solanacearum species complex -17.2962 87 0 species 1310165 Ralstonia pseudosolanacearum -17.2962 87 87 strain 267608 Ralstonia pseudosolanacearum GMI1000 -13.7177 69 2 species 329 Ralstonia pickettii -12.9225 65 65 strain 402626 Ralstonia pickettii 12J -0.3976 2 2 strain 428406 Ralstonia pickettii 12D -4.9702 25 2 genus 106589 Cupriavidus -2.9821 15 0 species 119219 Cupriavidus metallidurans -2.9821 15 15 strain 266264 Cupriavidus metallidurans CH34 -0.7952 4 1 species 106590 Cupriavidus necator -0.5964 3 3 strain 381666 Cupriavidus necator H16 -0.5964 3 0 species 164546 Cupriavidus taiwanensis -0.5964 3 3 strain 977880 Cupriavidus taiwanensis LMG 19424 -0.1988 1 0 species 248026 Cupriavidus pinatubonensis -0.1988 1 1 strain 264198 Cupriavidus pinatubonensis JMP134 -2.1869 11 1 genus 32008 Burkholderia -1.3917 7 1 species group 87882 Burkholderia cepacia complex -0.5964 3 3 species 292 Burkholderia cepacia -0.1988 1 0 species 87883 Burkholderia multivorans -0.1988 1 1 strain 395019 Burkholderia multivorans ATCC 17616 -0.1988 1 0 species 95486 Burkholderia cenocepacia -0.1988 1 1 strain 216591 Burkholderia cenocepacia J2315 -0.1988 1 1 species 482957 Burkholderia lata -0.5964 3 1 species group 111527 pseudomallei group -0.1988 1 1 species 13373 Burkholderia mallei -0.1988 1 0 species 28450 Burkholderia pseudomallei -0.1988 1 1 strain 272560 Burkholderia pseudomallei K96243 -0.1988 1 1 genus 44013 Polynucleobacter -0.1988 1 0 genus 1822464 Paraburkholderia -0.1988 1 0 species 36873 Paraburkholderia xenovorans -0.1988 1 1 strain 266265 Paraburkholderia xenovorans LB400 -3.5785 18 3 family 80864 Comamonadaceae -1.1928 6 0 genus 283 Comamonas -1.1928 6 6 species 285 Comamonas testosteroni -1.1928 6 0 genus 3051137 Paracidovorax -1.1928 6 0 species 80869 Paracidovorax citrulli -1.1928 6 6 strain 397945 Paracidovorax citrulli AAC00-1 -0.1988 1 0 genus 34072 Variovorax -0.1988 1 0 species 34073 Variovorax paradoxus -0.1988 1 1 strain 543728 Variovorax paradoxus S110 -0.1988 1 0 genus 80865 Delftia -0.1988 1 0 species 80866 Delftia acidovorans -0.1988 1 1 strain 398578 Delftia acidovorans SPH-1 -0.1988 1 0 genus 201096 Alicycliphilus -0.1988 1 0 species 179636 Alicycliphilus denitrificans -0.1988 1 1 strain 596154 Alicycliphilus denitrificans K601 -0.9940 5 0 family 506 Alcaligenaceae -0.5964 3 1 genus 517 Bordetella -0.3976 2 0 species 518 Bordetella bronchiseptica -0.3976 2 2 strain 257310 Bordetella bronchiseptica RB50 -0.3976 2 0 genus 222 Achromobacter -0.3976 2 2 species 85698 Achromobacter xylosoxidans -0.9940 5 1 family 2975441 Sphaerotilaceae -0.3976 2 0 genus 88 Leptothrix -0.3976 2 0 species 34029 Leptothrix cholodnii -0.3976 2 2 strain 395495 Leptothrix cholodnii SP-6 -0.3976 2 0 genus 316612 Methylibium -0.3976 2 0 species 105560 Methylibium petroleiphilum -0.3976 2 2 strain 420662 Methylibium petroleiphilum PM1 -0.1988 1 1 family 75682 Oxalobacteraceae -0.3976 2 0 order 206389 Rhodocyclales -0.1988 1 0 family 2008794 Zoogloeaceae -0.1988 1 0 genus 12960 Azoarcus -0.1988 1 1 species 418699 Azoarcus olearius -0.1988 1 0 family 2008795 Azonexaceae -0.1988 1 0 genus 73029 Dechloromonas -0.1988 1 0 species 259537 Dechloromonas aromatica -0.1988 1 1 strain 159087 Dechloromonas aromatica RCB -21.0736 106 27 class 1236 Gammaproteobacteria -9.5427 48 6 order 91347 Enterobacterales -7.9523 40 10 family 543 Enterobacteriaceae -5.5666 28 0 genus 561 Escherichia -5.5666 28 16 species 562 Escherichia coli -2.3857 12 12 strain 83333 Escherichia coli K-12 -0.3976 2 0 no rank 2890311 Klebsiella/Raoultella group -0.3976 2 0 genus 570 Klebsiella -0.1988 1 0 species 548 Klebsiella aerogenes -0.1988 1 1 strain 1028307 Klebsiella aerogenes KCTC 2190 -0.1988 1 1 species 571 Klebsiella oxytoca -0.1988 1 0 family 1903409 Erwiniaceae -0.1988 1 0 genus 32199 Buchnera -0.1988 1 1 species 9 Buchnera aphidicola -0.1988 1 1 family 1903414 Morganellaceae -3.1809 16 0 order 72274 Pseudomonadales -3.1809 16 0 family 135621 Pseudomonadaceae -2.9821 15 1 genus 286 Pseudomonas -2.1869 11 0 species group 136841 Pseudomonas aeruginosa group -2.1869 11 1 species 287 Pseudomonas aeruginosa -1.9881 10 10 strain 208964 Pseudomonas aeruginosa PAO1 -0.3976 2 0 species group 136845 Pseudomonas putida group -0.3976 2 1 species 303 Pseudomonas putida -0.1988 1 1 strain 160488 Pseudomonas putida KT2440 -0.1988 1 1 species group 136849 Pseudomonas syringae group -0.1988 1 0 genus 2901164 Stutzerimonas -0.1988 1 0 species group 136846 Stutzerimonas stutzeri group -0.1988 1 0 species subgroup 578833 Stutzerimonas stutzeri subgroup -0.1988 1 1 species 316 Stutzerimonas stutzeri -1.3917 7 0 order 135625 Pasteurellales -1.3917 7 1 family 712 Pasteurellaceae -1.1928 6 0 genus 724 Haemophilus -1.1928 6 0 species 727 Haemophilus influenzae -1.1928 6 6 strain 71421 Haemophilus influenzae Rd KW20 -0.3976 2 0 order 135618 Methylococcales -0.3976 2 0 family 403 Methylococcaceae -0.3976 2 0 genus 413 Methylococcus -0.3976 2 0 species 414 Methylococcus capsulatus -0.3976 2 2 strain 243233 Methylococcus capsulatus str. Bath -0.3976 2 0 order 2887326 Moraxellales -0.3976 2 0 family 468 Moraxellaceae -0.3976 2 0 genus 469 Acinetobacter -0.3976 2 0 species 202950 Acinetobacter baylyi -0.3976 2 2 strain 62977 Acinetobacter baylyi ADP1 -0.1988 1 0 order 135613 Chromatiales -0.1988 1 0 family 1046 Chromatiaceae -0.1988 1 0 genus 85072 Allochromatium -0.1988 1 0 species 1049 Allochromatium vinosum -0.1988 1 1 strain 572477 Allochromatium vinosum DSM 180 -0.1988 1 0 order 135614 Lysobacterales -0.1988 1 0 family 32033 Lysobacteraceae -0.1988 1 1 genus 338 Xanthomonas -0.1988 1 0 order 135623 Vibrionales -0.1988 1 0 family 641 Vibrionaceae -0.1988 1 0 genus 662 Vibrio -0.1988 1 0 species 666 Vibrio cholerae -0.1988 1 0 serogroup 127906 Vibrio cholerae O1 -0.1988 1 0 no rank 686 Vibrio cholerae O1 biovar El Tor -0.1988 1 1 strain 243277 Vibrio cholerae O1 biovar El Tor str. N16961 -0.1988 1 0 order 135624 Aeromonadales -0.1988 1 0 family 84642 Aeromonadaceae -0.1988 1 0 genus 642 Aeromonas -0.1988 1 1 species 644 Aeromonas hydrophila -3.5785 18 3 class 28211 Alphaproteobacteria -1.1928 6 0 order 356 Hyphomicrobiales -0.3976 2 0 family 69277 Phyllobacteriaceae -0.3976 2 0 genus 31988 Aminobacter -0.3976 2 2 species 83263 Aminobacter aminovorans -0.3976 2 0 family 82115 Rhizobiaceae -0.3976 2 0 no rank 227292 Sinorhizobium/Ensifer group -0.3976 2 0 genus 28105 Sinorhizobium -0.1988 1 0 species 382 Sinorhizobium meliloti -0.1988 1 1 strain 266834 Sinorhizobium meliloti 1021 -0.1988 1 0 species group 663276 Sinorhizobium fredii group -0.1988 1 0 species 380 Sinorhizobium fredii -0.1988 1 1 strain 394 Sinorhizobium fredii NGR234 -0.1988 1 0 family 41294 Nitrobacteraceae -0.1988 1 0 genus 1073 Rhodopseudomonas -0.1988 1 0 species 1076 Rhodopseudomonas palustris -0.1988 1 1 strain 258594 Rhodopseudomonas palustris CGA009 -0.1988 1 0 family 335928 Xanthobacteraceae -0.1988 1 0 genus 6 Azorhizobium -0.1988 1 0 species 7 Azorhizobium caulinodans -0.1988 1 1 strain 438753 Azorhizobium caulinodans ORS 571 -0.9940 5 0 order 204455 Rhodobacterales -0.7952 4 2 family 31989 Paracoccaceae -0.1988 1 0 genus 265 Paracoccus -0.1988 1 1 species 266 Paracoccus denitrificans -0.1988 1 0 genus 2818469 Fuscovulum -0.1988 1 1 species 1075 Fuscovulum blasticum -0.1988 1 0 family 2854170 Roseobacteraceae -0.1988 1 0 genus 97050 Ruegeria -0.1988 1 0 species 89184 Ruegeria pomeroyi -0.1988 1 1 strain 246200 Ruegeria pomeroyi DSS-3 -0.3976 2 0 order 204441 Rhodospirillales -0.3976 2 0 family 41295 Rhodospirillaceae -0.3976 2 0 genus 1081 Rhodospirillum -0.3976 2 0 species 1085 Rhodospirillum rubrum -0.3976 2 2 strain 269796 Rhodospirillum rubrum ATCC 11170 -0.1988 1 0 order 766 Rickettsiales -0.1988 1 0 family 775 Rickettsiaceae -0.1988 1 0 tribe 33988 Rickettsieae -0.1988 1 1 genus 780 Rickettsia -0.1988 1 0 order 204458 Caulobacterales -0.1988 1 0 family 76892 Caulobacteraceae -0.1988 1 0 genus 75 Caulobacter -0.1988 1 0 species 155892 Caulobacter vibrioides -0.1988 1 1 strain 190650 Caulobacter vibrioides CB15 -2.5845 13 1 kingdom 1783272 Bacillati -0.9940 5 1 phylum 1239 Bacillota -0.7952 4 0 class 91061 Bacilli -0.7952 4 0 order 1385 Bacillales -0.7952 4 0 family 186817 Bacillaceae -0.5964 3 0 genus 1386 Bacillus -0.5964 3 0 species group 653685 Bacillus subtilis group -0.5964 3 0 species 1423 Bacillus subtilis -0.5964 3 0 subspecies 135461 Bacillus subtilis subsp. subtilis -0.5964 3 3 strain 224308 Bacillus subtilis subsp. subtilis str. 168 -0.1988 1 0 genus 129337 Geobacillus -0.1988 1 0 species group 1505648 Geobacillus thermoleovorans group -0.1988 1 0 species 1462 Geobacillus kaustophilus -0.1988 1 1 strain 235909 Geobacillus kaustophilus HTA426 -0.9940 5 0 phylum 201174 Actinomycetota -0.9940 5 0 class 1760 Actinomycetes -0.5964 3 0 order 85009 Propionibacteriales -0.5964 3 0 family 31957 Propionibacteriaceae -0.5964 3 0 genus 1912216 Cutibacterium -0.5964 3 0 species 1747 Cutibacterium acnes -0.5964 3 3 strain 267747 Cutibacterium acnes KPA171202 -0.1988 1 0 order 85007 Mycobacteriales -0.1988 1 0 family 1762 Mycobacteriaceae -0.1988 1 0 genus 1763 Mycobacterium -0.1988 1 0 species group 77643 Mycobacterium tuberculosis complex -0.1988 1 1 species 1773 Mycobacterium tuberculosis -0.1988 1 0 order 85011 Kitasatosporales -0.1988 1 0 family 2062 Streptomycetaceae -0.1988 1 1 genus 1883 Streptomyces -0.3976 2 0 clade 1798711 Cyanobacteriota/Melainabacteria group -0.3976 2 0 phylum 1117 Cyanobacteriota -0.3976 2 1 class 3028117 Cyanophyceae -0.1988 1 0 order 1890424 Synechococcales -0.1988 1 0 family 1890428 Merismopediaceae -0.1988 1 0 genus 1142 Synechocystis -0.1988 1 0 no rank 2640012 unclassified Synechocystis -0.1988 1 0 species 1148 Synechocystis sp. PCC 6803 -0.1988 1 1 no rank 1111708 Synechocystis sp. PCC 6803 substr. Kazusa -0.7952 4 0 clade 1783270 FCB group -0.7952 4 0 clade 68336 Bacteroidota/Chlorobiota group -0.7952 4 0 phylum 976 Bacteroidota -0.3976 2 0 class 117743 Flavobacteriia -0.3976 2 1 order 200644 Flavobacteriales -0.1988 1 0 family 49546 Flavobacteriaceae -0.1988 1 0 genus 237 Flavobacterium -0.1988 1 0 species 96345 Flavobacterium psychrophilum -0.1988 1 1 strain 402612 Flavobacterium psychrophilum JIP02/86 -0.3976 2 0 class 200643 Bacteroidia -0.3976 2 0 order 171549 Bacteroidales -0.3976 2 0 family 171551 Porphyromonadaceae -0.3976 2 0 genus 836 Porphyromonas -0.3976 2 0 species 837 Porphyromonas gingivalis -0.3976 2 2 strain 242619 Porphyromonas gingivalis W83 -0.3976 2 0 clade 1783257 PVC group -0.3976 2 0 phylum 204428 Chlamydiota -0.3976 2 0 class 204429 Chlamydiia -0.3976 2 0 order 51291 Chlamydiales -0.3976 2 0 family 809 Chlamydiaceae -0.3976 2 0 no rank 1113537 Chlamydia/Chlamydophila group -0.3976 2 2 genus 810 Chlamydia -0.1988 1 0 phylum 2818505 Myxococcota -0.1988 1 0 subclass 3031711 Polyangia -0.1988 1 0 order 3031712 Polyangiales -0.1988 1 0 family 49 Polyangiaceae -0.1988 1 0 genus 39643 Sorangium -0.1988 1 0 species 56 Sorangium cellulosum -0.1988 1 1 strain 448385 Sorangium cellulosum So ce56 -0.1988 1 0 phylum 3018035 Bdellovibrionota -0.1988 1 0 class 3031418 Bdellovibrionia -0.1988 1 0 order 213481 Bdellovibrionales -0.1988 1 0 family 213483 Pseudobdellovibrionaceae -0.1988 1 0 genus 958 Bdellovibrio -0.1988 1 0 species 959 Bdellovibrio bacteriovorus -0.1988 1 1 strain 264462 Bdellovibrio bacteriovorus HD100 -2.5845 13 3 superkingdom 2759 Eukaryota -1.3917 7 0 clade 33154 Opisthokonta -1.1928 6 0 kingdom 33208 Metazoa -1.1928 6 0 clade 6072 Eumetazoa -1.1928 6 1 clade 33213 Bilateria -0.9940 5 0 clade 33511 Deuterostomia -0.9940 5 0 phylum 7711 Chordata -0.9940 5 0 subphylum 89593 Craniata -0.9940 5 0 clade 7742 Vertebrata -0.9940 5 0 clade 7776 Gnathostomata -0.9940 5 0 clade 117570 Teleostomi -0.9940 5 1 clade 117571 Euteleostomi -0.7952 4 0 superclass 8287 Sarcopterygii -0.7952 4 0 clade 1338369 Dipnotetrapodomorpha -0.7952 4 0 clade 32523 Tetrapoda -0.7952 4 1 clade 32524 Amniota -0.5964 3 0 class 40674 Mammalia -0.5964 3 0 clade 32525 Theria -0.5964 3 0 clade 9347 Eutheria -0.5964 3 3 clade 1437010 Boreoeutheria -0.1988 1 0 kingdom 4751 Fungi -0.1988 1 0 subkingdom 451864 Dikarya -0.1988 1 0 phylum 4890 Ascomycota -0.1988 1 0 subphylum 451866 Taphrinomycotina -0.1988 1 0 class 147554 Schizosaccharomycetes -0.1988 1 0 order 34346 Schizosaccharomycetales -0.1988 1 0 family 4894 Schizosaccharomycetaceae -0.1988 1 0 genus 4895 Schizosaccharomyces -0.1988 1 0 species 4896 Schizosaccharomyces pombe -0.1988 1 1 strain 284812 Schizosaccharomyces pombe 972h- -0.3976 2 0 kingdom 33090 Viridiplantae -0.3976 2 0 phylum 35493 Streptophyta -0.3976 2 0 subphylum 131221 Streptophytina -0.3976 2 0 clade 3193 Embryophyta -0.3976 2 0 clade 58023 Tracheophyta -0.3976 2 0 clade 78536 Euphyllophyta -0.3976 2 0 clade 58024 Spermatophyta -0.3976 2 0 class 3398 Magnoliopsida -0.3976 2 0 clade 1437183 Mesangiospermae -0.3976 2 0 clade 71240 eudicotyledons -0.3976 2 0 clade 91827 Gunneridae -0.3976 2 0 clade 1437201 Pentapetalae -0.3976 2 0 clade 71275 rosids -0.3976 2 0 clade 91836 malvids -0.3976 2 0 order 3699 Brassicales -0.3976 2 0 family 3700 Brassicaceae -0.3976 2 0 tribe 980083 Camelineae -0.3976 2 0 genus 3701 Arabidopsis -0.3976 2 2 species 3702 Arabidopsis thaliana -0.1988 1 0 clade 554915 Amoebozoa -0.1988 1 0 phylum 2605435 Evosea -0.1988 1 0 class 142796 Eumycetozoa -0.1988 1 0 clade 33083 Dictyostelia -0.1988 1 0 order 2058949 Dictyosteliales -0.1988 1 0 family 2058185 Dictyosteliaceae -0.1988 1 0 genus 5782 Dictyostelium -0.1988 1 1 species 44689 Dictyostelium discoideum -0.3976 2 1 superkingdom 2157 Archaea -0.1988 1 0 kingdom 3366610 Methanobacteriati -0.1988 1 0 phylum 28890 Methanobacteriota -0.1988 1 0 clade 2290931 Stenosarchaea group -0.1988 1 0 class 183963 Halobacteria -0.1988 1 0 order 2235 Halobacteriales -0.1988 1 1 family 1963268 Haloarculaceae -1.1928 6 0 superkingdom 10239 Viruses -0.7952 4 0 clade 2559587 Riboviria -0.7952 4 0 kingdom 2732396 Orthornavirae -0.7952 4 0 phylum 2732406 Kitrinoviricota -0.7952 4 0 class 2732462 Flasuviricetes -0.7952 4 0 order 2732545 Amarillovirales -0.7952 4 0 family 11050 Flaviviridae -0.7952 4 0 genus 3044782 Orthoflavivirus -0.7952 4 0 species 3048287 Orthoflavivirus powassanense -0.7952 4 0 no rank 11083 Powassan virus -0.7952 4 4 no rank 39008 Tick-borne powassan virus (strain lb) -0.3976 2 0 clade 2731341 Duplodnaviria -0.3976 2 0 kingdom 2731360 Heunggongvirae -0.3976 2 0 phylum 2731361 Peploviricota -0.3976 2 0 class 2731363 Herviviricetes -0.3976 2 0 order 548681 Herpesvirales -0.3976 2 0 family 3044472 Orthoherpesviridae -0.3976 2 0 subfamily 10357 Betaherpesvirinae -0.3976 2 0 genus 10358 Cytomegalovirus -0.3976 2 0 species 3050295 Cytomegalovirus humanbeta5 -0.3976 2 2 no rank 10359 Human betaherpesvirus 5 diff --git a/tools/mmseqs2/test-data/result_tophit_aln b/tools/mmseqs2/test-data/result_tophit_aln deleted file mode 100644 index 90c2e5c2378..00000000000 --- a/tools/mmseqs2/test-data/result_tophit_aln +++ /dev/null @@ -1,498 +0,0 @@ -MYSTERY.112 Q04222 0.144 866 27 0 0 33 0 866 1.144E-14 68 -MYSTERY.113 Q8XYY7 0.222 250 25 0 0 33 0 250 6.054E-15 69 -MYSTERY.114 Q04538 0.230 195 17 0 0 23 0 195 1.856E-11 58 -MYSTERY.114 Q04538 0.242 195 19 0 0 26 0 195 1.861E-13 64 -MYSTERY.114 Q8XVT6 0.880 28 3 0 0 28 0 28 8.271E-10 54 -MYSTERY.116 Q59643 0.235 220 24 0 0 33 0 220 1.144E-14 68 -MYSTERY. P0ABK4 0.352 120 20 0 0 32 0 120 4.492E-16 72 -MYSTERY. Q8Y0Y8 0.248 217 24 0 0 33 0 217 1.330E-16 74 -MYSTERY. Q8Y0Y8 0.191 357 25 0 0 32 0 357 2.205E-15 70 -MYSTERY.2 A1TQ21 0.590 59 13 0 0 33 0 59 1.695E-15 70 -MYSTERY.186 B2UD46 0.430 93 18 0 0 33 0 93 9.679E-17 74 -MYSTERY.186 Q1LJQ2 0.182 401 26 0 0 33 0 401 3.204E-15 70 -MYSTERY.186 Q8XWV7 0.269 191 23 0 0 33 0 191 5.124E-17 75 -MYSTERY.186 P51066 0.208 325 25 0 0 33 0 325 7.604E-18 77 -MYSTERY.187 Q87WD5 0.183 393 26 0 0 33 0 393 4.404E-15 69 -MYSTERY.187 Q9HY07 0.971 40 1 0 0 33 0 40 2.492E-20 84 -MYSTERY.188 Q9RGS8 0.209 331 25 0 0 32 0 331 1.068E-18 79 -MYSTERY.189 Q3V384 0.222 241 25 0 0 33 0 241 4.088E-14 66 -MYSTERY.189 P0A9V3 0.652 49 10 0 0 31 0 49 5.027E-14 66 -MYSTERY.190 Q8XBY1 0.139 1029 28 0 0 33 0 1029 4.088E-14 66 -MYSTERY.38 Q8XZR3 0.865 29 4 0 0 27 0 29 4.125E-10 55 -MYSTERY.38 Q8Y2K1 0.375 110 19 0 0 32 0 110 3.268E-16 72 -MYSTERY.39 Q1LI62 0.514 68 16 0 0 33 0 68 8.323E-15 68 -MYSTERY.39 A3MRX9 0.378 100 20 0 0 33 0 100 2.974E-14 67 -MYSTERY.39 P96963 0.780 39 6 0 0 26 0 39 9.844E-14 65 -MYSTERY.40 Q9I742 0.151 740 26 0 0 32 0 740 2.205E-15 70 -MYSTERY.40 P08201 0.329 143 21 0 0 33 0 143 5.533E-18 78 -MYSTERY.86 A4G7P5 0.159 377 16 0 0 20 0 377 5.760E-07 45 -MYSTERY.86 B2UAK8 0.201 320 26 0 0 33 0 320 1.233E-15 71 -MYSTERY.87 B2U820 0.238 240 24 0 0 33 0 240 2.713E-17 76 -MYSTERY.51 B9VXQ2 0.285 166 23 0 0 33 0 166 4.748E-16 72 -MYSTERY.53 Q1LS28 0.188 395 26 0 0 33 0 395 9.679E-17 74 -MYSTERY.53 Q1LS28 0.166 547 27 0 0 33 0 547 1.829E-16 73 -MYSTERY.53 A0A0H3LKV3 0.282 191 23 0 0 33 0 191 4.351E-19 81 -MYSTERY.53 A0A0H3LKV3 0.356 121 21 0 0 33 0 121 9.679E-17 74 -MYSTERY.53 Q8XQE8 0.238 232 24 0 0 33 0 232 2.513E-16 73 -MYSTERY.54 Q6MIV0 0.155 658 26 0 0 32 0 658 4.166E-15 69 -MYSTERY.54 B2U8Z0 0.266 177 23 0 0 33 0 177 8.323E-15 68 -MYSTERY.55 Q7VWV8 0.265 178 24 0 0 33 0 178 8.323E-15 68 -MYSTERY.204 Q04222 1.000 35 0 0 0 33 0 35 1.436E-17 76 -MYSTERY.5 B2UBP2 0.195 361 26 0 0 33 0 361 7.042E-17 74 -MYSTERY.5 Q8Y0W7 0.195 382 26 0 0 33 0 382 2.132E-18 79 -MYSTERY.6 A3MKP1 0.536 72 15 0 0 34 0 72 2.086E-17 76 -MYSTERY.6 B2UG65 0.203 298 26 0 0 33 0 298 1.144E-14 68 -MYSTERY.7 Q8XV83 0.254 209 24 0 0 33 0 209 9.679E-17 74 -MYSTERY.8 Q8XZH8 0.186 383 26 0 0 33 0 383 1.695E-15 70 -MYSTERY.8 Q8XZH7 0.597 50 12 0 0 30 0 50 2.985E-12 61 -MYSTERY.92 Q8Y368 0.195 371 26 0 0 33 0 371 1.974E-17 76 -MYSTERY.92 Q59677 0.203 311 25 0 0 32 0 311 1.167E-15 71 -MYSTERY.62 Q8Y303 0.164 534 27 0 0 33 0 534 6.054E-15 69 -MYSTERY.62 Q8Y303 0.162 467 22 0 0 27 0 467 1.702E-11 59 -MYSTERY.62 Q8XXQ1 0.376 119 20 0 0 33 0 119 2.930E-18 78 -MYSTERY.62 B2U7U6 0.422 88 18 0 0 33 0 88 8.323E-15 68 -MYSTERY.64 Q4UM33 0.272 152 23 0 0 33 0 152 2.569E-12 61 -MYSTERY.64 B2UFW5 1.000 27 0 0 0 27 0 27 4.759E-12 60 -MYSTERY.65 P24562 0.414 104 18 0 0 32 0 104 2.772E-18 78 -MYSTERY.65 B2U9U9 0.275 187 23 0 0 33 0 187 1.974E-17 76 -MYSTERY.65 Q0KBP1 0.305 157 22 0 0 33 0 157 2.713E-17 76 -MYSTERY.127 A6H198 0.187 357 26 0 0 33 0 357 4.088E-14 66 -MYSTERY.55 C4LEY6 0.230 253 25 0 0 33 0 253 7.042E-17 74 -MYSTERY.55 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0 0 33 0 86 1.144E-14 68 -MYSTERY.16 Q8Y1F5 0.403 100 19 0 0 33 0 100 2.513E-16 73 -MYSTERY.16 Q8Y1F5 0.240 229 24 0 0 33 0 229 1.829E-16 73 -MYSTERY.16 P20372 0.335 146 21 0 0 33 0 146 3.167E-19 81 -MYSTERY.17 Q8K9C4 0.244 204 23 0 0 31 0 204 1.407E-14 68 -MYSTERY.18 Q5LLW7 0.180 425 26 0 0 33 0 425 8.972E-16 71 -MYSTERY.19 P17551 0.211 291 25 0 0 33 0 291 4.748E-16 72 -MYSTERY.19 B2U6Y7 0.261 175 24 0 0 33 0 175 7.729E-14 66 -MYSTERY.20 B2UK94 0.341 125 21 0 0 33 0 125 6.527E-16 72 -MYSTERY.178 Q8Y303 0.173 417 26 0 0 33 0 417 5.224E-13 63 -MYSTERY.178 Q8Y303 0.189 358 26 0 0 33 0 358 8.323E-15 68 -MYSTERY.178 Q8XVK1 0.254 190 24 0 0 33 0 190 1.573E-14 68 -MYSTERY.178 Q8XV02 0.147 874 27 0 0 33 0 874 5.124E-17 75 -MYSTERY.178 Q8XV02 0.154 690 27 0 0 33 0 690 1.695E-15 70 -MYSTERY.226 B2UFL5 0.248 211 24 0 0 33 0 211 6.527E-16 72 -MYSTERY.226 B2UFL5 0.620 55 12 0 0 33 0 55 3.204E-15 70 -MYSTERY.227 Q475B2 0.254 188 24 0 0 33 0 188 2.163E-14 67 -MYSTERY.227 Q8XWR1 0.208 262 25 0 0 33 0 262 7.183E-13 63 -MYSTERY.228 A1TTD4 0.613 55 12 0 0 33 0 55 6.054E-15 69 -MYSTERY.180 Q59677 0.203 311 25 0 0 32 0 311 1.167E-15 71 -MYSTERY.181 P45175 0.183 417 25 0 0 32 0 417 1.730E-16 73 -MYSTERY.183 P17551 0.658 53 11 0 0 33 0 53 4.748E-16 72 -MYSTERY.66 Q8XZJ0 0.221 241 25 0 0 33 0 241 7.729E-14 66 -MYSTERY.67 Q8Y0Y5 0.384 104 20 0 0 33 0 104 1.233E-15 71 -MYSTERY.67 B2U887 0.620 54 12 0 0 33 0 54 8.323E-15 68 -MYSTERY.68 C3K803 0.235 200 23 0 0 31 0 200 1.214E-12 62 -MYSTERY.68 Q8XW28 0.206 333 25 0 0 33 0 333 5.533E-18 78 -MYSTERY.69 Q6A5T5 0.279 172 22 0 0 32 0 172 4.492E-16 72 -MYSTERY.70 P71369 0.815 39 6 0 0 32 0 39 1.082E-14 68 -MYSTERY.43 P71298 0.181 428 26 0 0 33 0 428 2.513E-16 73 -MYSTERY.43 Q54435 0.313 137 19 0 0 29 0 137 3.522E-15 69 -MYSTERY.44 P0AE13 0.196 344 26 0 0 33 0 344 6.527E-16 72 -MYSTERY.44 P37352 0.302 132 19 0 0 28 0 132 3.942E-13 63 -MYSTERY.45 C6BKZ1 0.277 187 23 0 0 33 0 187 1.045E-17 77 -MYSTERY.45 Q04222 0.144 925 27 0 0 33 0 925 1.695E-15 70 -MYSTERY.45 Q8XW19 0.150 774 27 0 0 33 0 774 8.972E-16 71 -MYSTERY.45 Q8XW19 0.180 429 25 0 0 32 0 429 4.492E-16 72 -MYSTERY.61 B3R3Y0 0.173 458 26 0 0 33 0 458 4.404E-15 69 -MYSTERY.62 P12625 0.189 355 25 0 0 32 0 355 1.082E-14 68 -MYSTERY.25 B2UBB1 0.361 102 20 0 0 32 0 102 2.613E-13 64 -MYSTERY.26 B2UCD6 0.243 210 24 0 0 33 0 210 6.054E-15 69 -MYSTERY.26 Q8Y2B9 0.361 114 20 0 0 33 0 114 8.972E-16 71 -MYSTERY.27 Q97TR7 0.340 130 21 0 0 33 0 130 9.679E-17 74 -MYSTERY.27 Q8XU90 0.610 57 12 0 0 33 0 57 1.233E-15 71 -MYSTERY.27 B2UGT5 0.234 230 25 0 0 33 0 230 2.330E-15 70 -MYSTERY.28 Q898C7 0.154 680 27 0 0 33 0 680 1.695E-15 70 -MYSTERY.28 Q8EU05 0.198 329 26 0 0 33 0 329 1.695E-15 70 -MYSTERY.28 B2U9U3 0.202 312 26 0 0 33 0 312 2.330E-15 70 -MYSTERY.28 Q8Y035 0.234 241 25 0 0 33 0 241 1.330E-16 74 -MYSTERY.72 Q8Y1Y6 0.655 46 11 0 0 33 0 46 9.878E-13 63 -MYSTERY.72 Q8Y0A5 0.289 150 23 0 0 33 0 150 2.974E-14 67 -MYSTERY.74 P44450 0.630 59 12 0 0 33 0 59 1.974E-17 76 -MYSTERY.75 O34748 0.294 153 20 0 0 30 0 153 1.972E-15 70 -MYSTERY.76 Q8Y0H3 0.278 165 22 0 0 31 0 165 5.416E-15 69 -MYSTERY.76 B2U8Z2 0.361 120 20 0 0 33 0 120 5.124E-17 75 -MYSTERY.76 B2U8Z2 0.307 152 22 0 0 33 0 152 9.679E-17 74 -MYSTERY.133 Q46WE0 0.182 378 26 0 0 33 0 378 5.621E-14 66 -MYSTERY.133 Q8XRM7 0.159 602 26 0 0 32 0 602 4.166E-15 69 -MYSTERY.133 Q05650 0.183 398 26 0 0 33 0 398 1.695E-15 70 -MYSTERY.144 Q8XVD1 0.203 317 26 0 0 33 0 317 6.527E-16 72 -MYSTERY.144 Q8XVD1 0.229 233 25 0 0 33 0 233 1.144E-14 68 -MYSTERY.144 Q8Y1L3 0.312 139 21 0 0 32 0 139 3.031E-15 70 -MYSTERY.144 P18761 0.231 243 24 0 0 32 0 243 4.492E-16 72 -MYSTERY.146 Q0KBP1 0.425 158 33 0 0 59 0 158 1.504E-32 121 -MYSTERY.147 Q44006 0.238 213 24 0 0 32 0 213 2.046E-14 67 -MYSTERY.148 B2UJ42 0.261 190 24 0 0 33 0 190 1.233E-15 71 -MYSTERY.168 B2UJ29 0.152 770 27 0 0 33 0 770 7.042E-17 74 -MYSTERY.172 Q1LRY0 0.216 239 23 0 0 30 0 239 8.348E-13 63 -MYSTERY.15 Q52990 0.340 119 20 0 0 32 0 119 1.082E-14 68 -MYSTERY.211 B2U7Y8 0.589 62 13 0 0 33 0 62 1.330E-16 74 -MYSTERY.213 Q8XWT9 0.157 609 27 0 0 33 0 609 2.974E-14 67 -MYSTERY.214 Q8Y050 0.530 59 15 0 0 33 0 59 1.358E-12 62 -MYSTERY.214 Q8Y050 0.316 140 22 0 0 33 0 140 6.527E-16 72 -MYSTERY.214 Q8Y2K5 0.179 339 26 0 0 33 0 339 8.566E-11 57 -MYSTERY.215 Q8XW28 0.189 379 26 0 0 33 0 379 2.513E-16 73 -MYSTERY.215 Q0K998 0.229 243 25 0 0 33 0 243 1.233E-15 71 -MYSTERY.215 Q8XZX8 0.899 36 3 0 0 33 0 36 2.330E-15 70 -MYSTERY.10 P0ACY5 0.161 599 27 0 0 33 0 599 6.527E-16 72 -MYSTERY.10 P05853 0.232 249 25 0 0 33 0 249 7.042E-17 74 -MYSTERY.12 Q2KHZ9 0.182 414 26 0 0 33 0 414 6.527E-16 72 -MYSTERY.12 P0A9U5 0.253 197 23 0 0 32 0 197 3.031E-15 70 -MYSTERY.12 P43672 0.204 289 25 0 0 33 0 289 4.088E-14 66 -MYSTERY.14 Q9I5N9 0.248 184 23 0 0 32 0 184 4.940E-13 63 -MYSTERY.14 B9MCM4 0.154 691 27 0 0 33 0 691 1.695E-15 70 -MYSTERY.71 P43948 0.361 124 20 0 0 33 0 124 7.604E-18 77 -MYSTERY.71 P43948 0.933 21 1 0 0 19 0 21 1.942E-06 44 -MYSTERY.72 P09980 0.660 51 11 0 0 33 0 51 3.204E-15 70 -MYSTERY.72 Q47EN5 0.258 193 24 0 0 33 0 193 1.695E-15 70 -MYSTERY.72 Q60C64 0.202 313 25 0 0 32 0 313 2.205E-15 70 -MYSTERY.2 B2UGT5 0.345 117 21 0 0 33 0 117 8.323E-15 68 -MYSTERY.2 B2UGT5 0.191 354 25 0 0 32 0 354 2.205E-15 70 -MYSTERY.3 P64613 0.334 92 13 0 0 21 0 92 1.964E-09 52 -MYSTERY.3 A1TLB7 0.265 193 24 0 0 33 0 193 1.330E-16 74 -MYSTERY.3 Q8XWT9 0.221 284 24 0 0 32 0 284 9.888E-18 77 -MYSTERY.3 Q8XWT9 0.203 336 26 0 0 33 0 336 1.974E-17 76 -MYSTERY.4 P19264 0.202 335 26 0 0 33 0 335 5.124E-17 75 -MYSTERY.4 Q8Y249 0.605 58 13 0 0 33 0 58 8.972E-16 71 -MYSTERY.185 Q88LF9 0.195 351 26 0 0 33 0 351 3.455E-16 72 -MYSTERY.185 P45200 0.274 173 23 0 0 33 0 173 1.695E-15 70 -MYSTERY.155 P18396 0.202 301 23 0 0 30 0 301 9.678E-15 68 -MYSTERY.156 P0AEC1 0.236 234 24 0 0 33 0 234 3.455E-16 72 -MYSTERY.156 Q9A3H4 0.188 403 26 0 0 33 0 403 2.713E-17 76 -MYSTERY.156 Q8XVP0 0.661 50 11 0 0 33 0 50 8.323E-15 68 -MYSTERY.157 Q9PL92 0.202 331 24 0 0 31 0 331 8.663E-17 74 -MYSTERY.157 Q8XZV8 0.490 74 16 0 0 33 0 74 2.330E-15 70 -MYSTERY.158 Q04222 0.144 937 27 0 0 33 0 937 8.972E-16 71 -MYSTERY.158 Q04222 0.155 693 27 0 0 33 0 693 1.330E-16 74 -MYSTERY.25 Q8XZI1 0.260 206 24 0 0 33 0 206 1.974E-17 76 -MYSTERY.253 P0ACY5 0.163 572 27 0 0 33 0 572 6.527E-16 72 -MYSTERY.254 B2UER7 0.278 173 23 0 0 33 0 173 4.748E-16 72 -MYSTERY.254 Q8Y2D9 0.287 188 25 0 0 36 0 188 1.976E-19 82 -MYSTERY.254 P25737 0.368 124 20 0 0 33 0 124 1.551E-18 79 -MYSTERY.254 P25737 0.184 406 24 0 0 31 0 406 4.249E-16 72 -MYSTERY.255 Q8Y2D1 0.264 175 24 0 0 33 0 175 2.974E-14 67 -MYSTERY.51 B2UDL1 0.328 131 22 0 0 33 0 131 1.233E-15 71 -MYSTERY.51 Q1LIH0 0.458 78 17 0 0 33 0 78 1.573E-14 68 -MYSTERY.51 B2UBN8 0.280 170 23 0 0 33 0 170 6.527E-16 72 -MYSTERY.51 B9VXQ2 0.222 232 25 0 0 33 0 232 2.763E-13 64 -MYSTERY.123 B2U984 0.292 147 23 0 0 33 0 147 4.088E-14 66 -MYSTERY.123 B2UBJ3 0.249 197 24 0 0 33 0 197 1.573E-14 68 -MYSTERY.124 P58617 0.252 207 24 0 0 33 0 207 3.455E-16 72 -MYSTERY.125 B2U7E0 0.289 161 23 0 0 33 0 161 8.972E-16 71 -MYSTERY.125 B1Y282 0.380 101 20 0 0 33 0 101 1.144E-14 68 -MYSTERY.126 B1Y2Y8 0.380 100 20 0 0 33 0 100 2.163E-14 67 -MYSTERY.148 A9ALD1 1.000 30 0 0 0 30 0 30 2.710E-15 70 -MYSTERY.148 Q9BUT1 0.346 122 21 0 0 33 0 122 6.527E-16 72 -MYSTERY.148 Q8XXY2 0.768 45 7 0 0 33 0 45 1.829E-16 73 -MYSTERY.149 B2UCA2 0.216 263 25 0 0 33 0 263 8.323E-15 68 -MYSTERY.70 A2SFU1 0.426 99 18 0 0 33 0 99 5.533E-18 78 -MYSTERY.70 P0ACY5 0.163 572 27 0 0 33 0 572 6.527E-16 72 -MYSTERY.71 Q9ZAA1 0.193 340 26 0 0 33 0 340 6.054E-15 69 -MYSTERY.71 O66113 0.257 173 23 0 0 32 0 173 4.940E-13 63 -MYSTERY.200 Q8Y0I1 0.307 139 22 0 0 33 0 139 1.144E-14 68 -MYSTERY.202 Q46087 0.294 163 22 0 0 32 0 163 9.158E-17 74 -MYSTERY.202 Q44264 0.866 34 4 0 0 29 0 34 3.035E-13 64 -MYSTERY.202 Q8XZ28 0.361 113 20 0 0 33 0 113 1.695E-15 70 -MYSTERY.204 Q8XZR0 0.726 47 9 0 0 33 0 47 6.527E-16 72 -MYSTERY.204 Q949P2 0.146 646 21 0 0 26 0 646 2.830E-10 55 -MYSTERY.58 B2UDV1 0.531 66 15 0 0 33 0 66 4.404E-15 69 -MYSTERY.59 Q83AY0 0.407 94 18 0 0 32 0 94 3.031E-15 70 -MYSTERY.59 Q8XWW3 0.298 147 22 0 0 33 0 147 6.054E-15 69 -MYSTERY.60 P25539 0.428 88 16 0 0 29 0 88 2.562E-15 70 -MYSTERY.60 Q0KBP1 0.265 178 23 0 0 32 0 178 7.873E-15 68 -MYSTERY.61 C5CYZ1 0.230 269 25 0 0 33 0 269 1.551E-18 79 -MYSTERY.206 Q3K9A2 0.317 137 22 0 0 33 0 137 1.695E-15 70 -MYSTERY.206 P20928 0.441 81 18 0 0 33 0 81 2.974E-14 67 -MYSTERY.210 P94177 0.319 142 22 0 0 33 0 142 1.330E-16 74 diff --git a/tools/mmseqs2/test-data/result_tophit_report b/tools/mmseqs2/test-data/result_tophit_report deleted file mode 100644 index 22080581ee8..00000000000 --- a/tools/mmseqs2/test-data/result_tophit_report +++ /dev/null @@ -1,388 +0,0 @@ -P43948 2 0.274 0.320 0.647 71421 strain Haemophilus influenzae Rd KW20 -Q3SLQ6 1 0.965 0.965 0.135 292415 strain Thiobacillus denitrificans ATCC 25259 -Q8Y050 2 0.676 0.961 0.423 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q0I1X0 1 0.845 0.845 0.198 205914 strain Histophilus somni 129PT -Q8Y035 1 0.536 0.536 0.234 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y221 2 0.557 1.026 0.185 267608 strain Ralstonia pseudosolanacearum GMI1000 -F4K0E8 1 0.328 0.328 0.233 3702 species Arabidopsis thaliana -Q8XZV8 1 0.457 0.457 0.490 267608 strain Ralstonia pseudosolanacearum GMI1000 -P05853 1 0.657 0.657 0.232 562 species Escherichia coli -B2U9D2 2 0.802 1.499 0.206 402626 strain Ralstonia pickettii 12J -B2UES0 1 0.512 0.512 0.317 402626 strain Ralstonia pickettii 12J -Q8XVI5 2 0.259 0.351 0.508 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U6Y7 1 0.660 0.660 0.261 402626 strain Ralstonia pickettii 12J -Q97TR7 1 0.695 0.695 0.340 272562 strain Clostridium acetobutylicum ATCC 824 -B3R6V8 1 0.458 0.458 0.249 977880 strain Cupriavidus taiwanensis LMG 19424 -Q06903 1 0.922 0.922 0.157 644 species Aeromonas hydrophila -Q1LS28 2 0.875 1.507 0.177 266264 strain Cupriavidus metallidurans CH34 -B2U9E4 1 0.736 0.736 0.153 402626 strain Ralstonia pickettii 12J -B2UJY9 1 0.856 0.856 0.175 402626 strain Ralstonia pickettii 12J -P52694 1 0.922 0.922 0.202 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UER1 1 0.407 0.407 0.531 402626 strain Ralstonia pickettii 12J -Q8XYY7 2 0.727 1.201 0.259 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UDM7 2 0.942 1.586 0.213 402626 strain Ralstonia pickettii 12J -B2UBN8 1 0.625 0.625 0.280 402626 strain Ralstonia pickettii 12J -A6H198 1 0.873 0.873 0.187 402612 strain Flavobacterium psychrophilum JIP02/86 -Q88NF9 1 0.638 0.638 0.200 160488 strain Pseudomonas putida KT2440 -Q39A26 1 0.267 0.267 0.350 482957 species Burkholderia lata -Q8Y303 5 0.873 3.124 0.201 267608 strain Ralstonia pseudosolanacearum GMI1000 -P21822 1 0.698 0.698 0.173 1028307 strain Klebsiella aerogenes KCTC 2190 -Q9RGS8 1 0.473 0.473 0.209 272560 strain Burkholderia pseudomallei K96243 -Q8XV50 1 0.915 0.915 0.214 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q52990 1 0.524 0.524 0.340 266834 strain Sinorhizobium meliloti 1021 -Q9A3H4 1 0.933 0.933 0.188 190650 strain Caulobacter vibrioides CB15 -Q8XZ28 1 0.635 0.635 0.361 267608 strain Ralstonia pseudosolanacearum GMI1000 -P77161 1 0.812 0.812 0.234 83333 strain Escherichia coli K-12 -Q2RNU4 2 0.069 0.139 0.905 269796 strain Rhodospirillum rubrum ATCC 11170 -A5FIF5 1 0.441 0.441 0.319 376686 strain Flavobacterium johnsoniae UW101 -Q9PL92 1 0.957 0.957 0.202 243161 strain Chlamydia muridarum str. Nigg -P39693 1 0.681 0.681 0.190 198628 strain Dickeya dadantii 3937 -B2UAX2 1 0.551 0.551 0.257 402626 strain Ralstonia pickettii 12J -Q3V384 1 0.502 0.502 0.222 10090 species Mus musculus -P53607 2 0.174 0.308 0.431 395019 strain Burkholderia multivorans ATCC 17616 -Q8Y0H8 1 0.266 0.266 0.495 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q05650 1 0.569 0.569 0.183 831 species Butyrivibrio fibrisolvens -Q8XRM7 1 0.860 0.860 0.159 267608 strain Ralstonia pseudosolanacearum GMI1000 -O31826 1 0.583 0.583 0.207 224308 strain Bacillus subtilis subsp. subtilis str. 168 -O34421 1 0.771 0.771 0.202 224308 strain Bacillus subtilis subsp. subtilis str. 168 -Q3AXP3 1 0.534 0.534 0.247 316279 species Synechococcus sp. CC9902 -A4G9B1 1 0.306 0.306 0.425 204773 species Herminiimonas arsenicoxydans -G3XCY8 1 0.182 0.182 0.325 208964 strain Pseudomonas aeruginosa PAO1 -Q8Y249 1 0.169 0.169 0.605 267608 strain Ralstonia pseudosolanacearum GMI1000 -P0A9V3 1 0.203 0.203 0.652 83334 serotype Escherichia coli O157:H7 -Q8Y2D1 1 0.540 0.540 0.264 267608 strain Ralstonia pseudosolanacearum GMI1000 -A1K436 1 0.913 0.913 0.170 418699 species Azoarcus olearius -B1Y7H2 1 0.916 0.916 0.135 395495 strain Leptothrix cholodnii SP-6 -Q04538 4 0.616 1.334 0.181 39008 no rank Tick-borne powassan virus (strain lb) -Q59643 2 0.653 1.249 0.237 208964 strain Pseudomonas aeruginosa PAO1 -Q8Y0Y8 2 0.955 1.535 0.220 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XQE8 1 0.503 0.503 0.238 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UJ29 2 0.884 1.598 0.147 402626 strain Ralstonia pickettii 12J -Q8Y1L3 1 0.799 0.799 0.312 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q898C7 1 0.786 0.786 0.154 212717 strain Clostridium tetani E88 -Q8Y368 2 0.712 1.300 0.187 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XXT2 1 0.796 0.796 0.283 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U8Z2 3 0.759 1.888 0.312 402626 strain Ralstonia pickettii 12J -A9BPR8 2 0.692 0.897 0.499 398578 strain Delftia acidovorans SPH-1 -P00208 1 0.289 0.289 1.000 572477 strain Allochromatium vinosum DSM 180 -B2U7U6 1 0.255 0.255 0.422 402626 strain Ralstonia pickettii 12J -P00902 1 0.093 0.093 0.981 62977 strain Acinetobacter baylyi ADP1 -Q8XZH8 1 0.982 0.982 0.186 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q62FC0 1 0.972 0.972 0.196 243160 strain Burkholderia mallei ATCC 23344 -A1TTD4 1 0.647 0.647 0.613 397945 strain Paracidovorax citrulli AAC00-1 -Q9I742 1 0.820 0.820 0.151 208964 strain Pseudomonas aeruginosa PAO1 -P58617 1 0.605 0.605 0.252 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XV02 2 0.552 0.989 0.150 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XU90 1 0.157 0.157 0.610 267608 strain Ralstonia pseudosolanacearum GMI1000 -P12007 1 0.807 0.807 0.196 10116 species Rattus norvegicus -Q8XWX9 1 0.878 0.878 0.152 267608 strain Ralstonia pseudosolanacearum GMI1000 -P21821 1 0.235 0.235 0.698 1028307 strain Klebsiella aerogenes KCTC 2190 -Q0JY21 1 0.839 0.839 0.172 381666 strain Cupriavidus necator H16 -Q2KHZ9 1 0.945 0.945 0.182 9913 species Bos taurus -P43804 1 0.451 0.451 0.254 71421 strain Haemophilus influenzae Rd KW20 -P24562 1 0.452 0.452 0.414 208964 strain Pseudomonas aeruginosa PAO1 -Q62HK4 1 0.996 0.996 0.151 243160 strain Burkholderia mallei ATCC 23344 -P00392 2 0.952 1.374 0.197 287 species Pseudomonas aeruginosa -P43623 1 0.918 0.918 0.200 559292 strain Saccharomyces cerevisiae S288C -Q9F187 1 0.663 0.663 0.175 106590 species Cupriavidus necator -B2UJ81 1 0.765 0.765 0.159 402626 strain Ralstonia pickettii 12J -Q8Y2K5 1 0.792 0.792 0.179 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q1LJ80 1 0.924 0.924 0.264 266264 strain Cupriavidus metallidurans CH34 -P18396 2 0.574 1.149 0.202 266834 strain Sinorhizobium meliloti 1021 -A4SXE7 1 0.107 0.107 0.593 312153 strain Polynucleobacter asymbioticus QLW-P1DMWA-1 -Q8XXP9 1 0.423 0.423 0.384 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q46087 2 0.630 0.951 0.247 83263 species Aminobacter aminovorans -A3MKP1 1 0.424 0.424 0.536 320389 strain Burkholderia mallei NCTC 10247 -Q8RWZ3 1 0.115 0.115 0.371 3702 species Arabidopsis thaliana -Q8XWV7 1 0.406 0.406 0.269 267608 strain Ralstonia pseudosolanacearum GMI1000 -A2SFU1 1 0.387 0.387 0.426 420662 strain Methylibium petroleiphilum PM1 -P24537 1 0.633 0.633 0.425 292 species Burkholderia cepacia -B2UCW7 1 0.788 0.788 0.151 402626 strain Ralstonia pickettii 12J -B9VXQ2 2 0.440 0.755 0.253 10363 no rank Human herpesvirus 5 strain Towne -B2UDV1 2 0.245 0.354 0.420 402626 strain Ralstonia pickettii 12J -B2UFL5 3 0.403 0.739 0.404 402626 strain Ralstonia pickettii 12J -A4G7P5 1 0.750 0.750 0.159 204773 species Herminiimonas arsenicoxydans -P20928 1 0.779 0.779 0.441 585 species Proteus vulgaris -Q8XXQ1 1 1.000 1.000 0.376 267608 strain Ralstonia pseudosolanacearum GMI1000 -A0RBB0 1 0.645 0.645 0.241 412694 strain Bacillus thuringiensis str. Al Hakam -P37643 1 0.325 0.325 0.308 83333 strain Escherichia coli K-12 -D5GHP2 1 0.611 0.611 0.209 656061 strain Tuber melanosporum Mel28 -B1YT20 1 0.573 0.573 0.219 398577 strain Burkholderia ambifaria MC40-6 -Q9I0K4 1 0.953 0.953 0.167 208964 strain Pseudomonas aeruginosa PAO1 -C3K803 1 0.360 0.360 0.235 216595 strain Pseudomonas [fluorescens] SBW25 -Q8XEL4 1 0.714 0.714 0.675 90370 no rank Salmonella enterica subsp. enterica serovar Typhi -Q8XZX8 1 0.099 0.099 0.899 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y0Y6 1 0.550 0.550 0.232 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XZJ0 1 0.825 0.825 0.221 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UK94 1 0.850 0.850 0.341 402626 strain Ralstonia pickettii 12J -Q8Y014 1 0.191 0.191 0.566 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y1Y6 1 0.131 0.131 0.655 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U887 1 0.234 0.234 0.620 402626 strain Ralstonia pickettii 12J -Q8XVI7 1 0.649 0.649 0.224 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2T612 1 0.131 0.131 0.628 398527 strain Paraburkholderia phytofirmans PsJN -B2UA33 1 0.866 0.866 0.232 402626 strain Ralstonia pickettii 12J -P37352 1 0.309 0.309 0.302 562 species Escherichia coli -A9F1Y8 1 0.158 0.158 0.493 448385 strain Sorangium cellulosum So ce56 -P0AEC1 1 0.452 0.452 0.236 199310 strain Escherichia coli CFT073 -Q8Y2K1 1 0.643 0.643 0.375 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U886 1 0.896 0.896 0.189 402626 strain Ralstonia pickettii 12J -P05704 1 0.756 0.756 0.174 83333 strain Escherichia coli K-12 -P05444 1 0.711 0.711 0.160 1075 species Fuscovulum blasticum -B2U9V9 1 0.088 0.088 0.942 402626 strain Ralstonia pickettii 12J -Q8XVD1 3 0.729 1.444 0.307 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q9I6M5 1 0.619 0.619 0.209 208964 strain Pseudomonas aeruginosa PAO1 -Q1QTE5 1 0.718 0.718 0.191 290398 strain Chromohalobacter israelensis DSM 3043 -P63884 2 0.926 1.851 0.177 199310 strain Escherichia coli CFT073 -P0A4Y5 1 0.437 0.437 0.196 233413 strain Mycobacterium tuberculosis variant bovis AF2122/97 -Q02KR1 1 0.791 0.791 0.160 208963 strain Pseudomonas aeruginosa UCBPP-PA14 -Q6A9P7 2 0.657 0.831 0.659 267747 strain Cutibacterium acnes KPA171202 -B3R112 1 0.069 0.069 1.000 977880 strain Cupriavidus taiwanensis LMG 19424 -Q5E814 1 0.935 0.935 0.141 312309 strain Aliivibrio fischeri ES114 -Q13UU8 1 0.746 0.746 0.152 266265 strain Paraburkholderia xenovorans LB400 -Q8K9C4 1 0.492 0.492 0.244 198804 strain Buchnera aphidicola str. Sg (Schizaphis graminum) -Q8XR16 2 0.649 1.103 0.198 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XZI1 1 0.579 0.579 0.260 267608 strain Ralstonia pseudosolanacearum GMI1000 -P26905 1 0.501 0.501 0.283 224308 strain Bacillus subtilis subsp. subtilis str. 168 -B2U7M8 1 0.922 0.922 0.270 402626 strain Ralstonia pickettii 12J -A1TUD6 3 0.724 1.633 0.189 397945 strain Paracidovorax citrulli AAC00-1 -Q87WD5 1 0.920 0.920 0.183 223283 strain Pseudomonas syringae pv. tomato str. DC3000 -B2UAK8 1 0.637 0.637 0.201 402626 strain Ralstonia pickettii 12J -Q6A5T5 1 0.705 0.705 0.279 267747 strain Cutibacterium acnes KPA171202 -Q8XVT6 1 0.066 0.066 0.880 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q0KBP1 3 0.452 1.251 0.332 381666 strain Cupriavidus necator H16 -B2UH25 1 0.690 0.690 0.184 402626 strain Ralstonia pickettii 12J -Q8Y093 1 0.831 0.831 0.150 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XUZ5 2 0.792 0.987 0.473 267608 strain Ralstonia pseudosolanacearum GMI1000 -P75853 1 0.564 0.564 0.268 83333 strain Escherichia coli K-12 -B2UBJ3 1 0.475 0.475 0.249 402626 strain Ralstonia pickettii 12J -Q8XVJ6 2 0.678 1.340 0.157 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y0I1 1 0.543 0.543 0.307 267608 strain Ralstonia pseudosolanacearum GMI1000 -C5CYZ1 1 0.996 0.996 0.230 543728 strain Variovorax paradoxus S110 -B2U9Y9 1 0.930 0.930 0.252 402626 strain Ralstonia pickettii 12J -Q8XXP6 1 0.353 0.353 0.231 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q5ZHT1 1 0.305 0.305 0.223 9031 species Gallus gallus -P25737 3 0.830 1.896 0.247 83333 strain Escherichia coli K-12 -Q8XZR0 1 0.055 0.055 0.726 267608 strain Ralstonia pseudosolanacearum GMI1000 -P44804 1 0.564 0.564 0.188 71421 strain Haemophilus influenzae Rd KW20 -P0A0V4 1 0.979 0.979 0.327 190486 strain Xanthomonas citri pv. citri str. 306 -B3R3Y0 2 0.933 1.177 0.250 977880 strain Cupriavidus taiwanensis LMG 19424 -A1TQ21 1 0.215 0.215 0.590 397945 strain Paracidovorax citrulli AAC00-1 -B2UG65 1 0.887 0.887 0.203 402626 strain Ralstonia pickettii 12J -B2U9U3 1 0.693 0.693 0.202 402626 strain Ralstonia pickettii 12J -Q0K998 1 0.664 0.664 0.229 381666 strain Cupriavidus necator H16 -P78283 1 0.955 0.955 0.176 243277 strain Vibrio cholerae O1 biovar El Tor str. N16961 -P39830 1 0.120 0.120 0.533 83333 strain Escherichia coli K-12 -B2JQF1 1 0.493 0.493 0.298 391038 strain Paraburkholderia phymatum STM815 -O66113 1 0.374 0.374 0.257 264203 strain Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 -P12625 1 0.727 0.727 0.189 329 species Ralstonia pickettii -P52698 2 0.899 1.602 0.215 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UBZ3 1 0.468 0.468 0.401 402626 strain Ralstonia pickettii 12J -Q9I4N1 1 0.776 0.776 0.195 208964 strain Pseudomonas aeruginosa PAO1 -P18761 1 0.767 0.767 0.231 10090 species Mus musculus -Q8XU65 1 0.830 0.830 0.165 267608 strain Ralstonia pseudosolanacearum GMI1000 -A7MGF3 1 0.615 0.615 0.188 290339 strain Cronobacter sakazakii ATCC BAA-894 -P0A9U5 1 0.372 0.372 0.252 83334 serotype Escherichia coli O157:H7 -Q8XZR3 1 0.165 0.165 0.865 267608 strain Ralstonia pseudosolanacearum GMI1000 -A2SCY5 1 0.057 0.057 1.000 420662 strain Methylibium petroleiphilum PM1 -B2UJ42 1 0.712 0.712 0.261 402626 strain Ralstonia pickettii 12J -Q8XWT9 4 0.997 2.783 0.183 267608 strain Ralstonia pseudosolanacearum GMI1000 -O32219 1 0.986 0.986 0.150 224308 strain Bacillus subtilis subsp. subtilis str. 168 -Q1LRY0 3 0.363 0.801 0.205 266264 strain Cupriavidus metallidurans CH34 -C5CPX0 1 0.325 0.325 0.304 543728 strain Variovorax paradoxus S110 -B2U820 2 0.673 1.106 0.216 402626 strain Ralstonia pickettii 12J -P0A134 2 0.866 1.391 0.197 287 species Pseudomonas aeruginosa -P71369 3 0.921 1.668 0.406 71421 strain Haemophilus influenzae Rd KW20 -Q83AY0 1 0.450 0.450 0.407 227377 strain Coxiella burnetii RSA 493 -P22998 1 0.374 0.374 0.226 1936 species Streptomyces violaceus -Q8Y1F5 2 0.530 0.762 0.322 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UD25 1 0.360 0.360 0.399 402626 strain Ralstonia pickettii 12J -P71298 1 0.918 0.918 0.181 83333 strain Escherichia coli K-12 -Q04222 6 0.966 3.612 0.383 285 species Comamonas testosteroni -Q47EN5 1 0.477 0.477 0.258 159087 strain Dechloromonas aromatica RCB -Q8XUU7 1 0.854 0.854 0.371 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q9Z6S5 1 0.542 0.542 0.168 83558 species Chlamydia pneumoniae -Q8XU12 1 0.949 0.949 0.162 267608 strain Ralstonia pseudosolanacearum GMI1000 -A9ALD1 1 0.106 0.106 1.000 395019 strain Burkholderia multivorans ATCC 17616 -Q54FB7 1 0.800 0.800 0.139 44689 species Dictyostelium discoideum -B2UF87 1 0.606 0.606 0.203 402626 strain Ralstonia pickettii 12J -P0AE13 1 0.711 0.711 0.196 83334 serotype Escherichia coli O157:H7 -Q7N288 1 0.674 0.674 0.167 243265 strain Photorhabdus laumondii subsp. laumondii TTO1 -Q8Y074 1 0.874 0.874 0.170 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y0M0 1 0.170 0.170 1.000 267608 strain Ralstonia pseudosolanacearum GMI1000 -P72173 3 0.756 1.761 0.264 208964 strain Pseudomonas aeruginosa PAO1 -Q8Y0H3 1 0.252 0.252 0.278 267608 strain Ralstonia pseudosolanacearum GMI1000 -P55552 1 0.921 0.921 0.149 394 strain Sinorhizobium fredii NGR234 -C6BGE7 2 0.946 1.645 0.204 428406 strain Ralstonia pickettii 12D -Q54J86 1 0.875 0.875 0.168 44689 species Dictyostelium discoideum -O85294 1 0.241 0.241 0.825 198804 strain Buchnera aphidicola str. Sg (Schizaphis graminum) -O99818 1 0.865 0.865 0.174 34632 species Rhipicephalus sanguineus -Q8XAX1 1 0.269 0.269 0.256 83334 serotype Escherichia coli O157:H7 -Q1LL27 1 0.985 0.985 0.154 266264 strain Cupriavidus metallidurans CH34 -B9MCM4 1 0.960 0.960 0.154 535289 strain [Acidovorax] ebreus TPSY -Q52070 1 0.545 0.545 0.252 549 species Pantoea agglomerans -Q04855 1 0.894 0.894 0.179 438753 strain Azorhizobium caulinodans ORS 571 -Q8XVK1 1 0.754 0.754 0.254 267608 strain Ralstonia pseudosolanacearum GMI1000 -P73335 1 0.923 0.923 0.230 1111708 no rank Synechocystis sp. PCC 6803 substr. Kazusa -Q8Y231 1 0.221 0.221 1.000 267608 strain Ralstonia pseudosolanacearum GMI1000 -A1TQ96 1 0.491 0.491 0.379 397945 strain Paracidovorax citrulli AAC00-1 -Q44006 1 0.947 0.947 0.238 266264 strain Cupriavidus metallidurans CH34 -P69229 1 0.463 0.463 0.367 199310 strain Escherichia coli CFT073 -F4G4E2 1 0.544 0.544 0.257 596154 strain Alicycliphilus denitrificans K601 -P0A3B2 1 0.203 0.203 0.343 574521 strain Escherichia coli O127:H6 str. E2348/69 -Q8Y1L2 1 0.108 0.108 0.932 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XPH8 2 0.394 0.555 0.360 267608 strain Ralstonia pseudosolanacearum GMI1000 -P44450 1 0.189 0.189 0.630 71421 strain Haemophilus influenzae Rd KW20 -P67431 1 0.337 0.337 0.543 199310 strain Escherichia coli CFT073 -P08201 1 0.169 0.169 0.329 83333 strain Escherichia coli K-12 -Q8XZZ5 1 0.574 0.574 0.212 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y0W7 1 0.890 0.890 0.195 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U7E0 1 0.549 0.549 0.289 402626 strain Ralstonia pickettii 12J -B2U8Z0 1 0.819 0.819 0.266 402626 strain Ralstonia pickettii 12J -Q8XV51 1 0.396 0.396 0.427 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UER7 1 0.599 0.599 0.278 402626 strain Ralstonia pickettii 12J -Q6MIV0 1 0.770 0.770 0.155 264462 strain Bdellovibrio bacteriovorus HD100 -Q8EU05 1 0.407 0.407 0.198 221109 strain Oceanobacillus iheyensis HTE831 -Q2RV34 1 0.541 0.541 0.270 269796 strain Rhodospirillum rubrum ATCC 11170 -Q51601 2 0.520 0.828 0.285 292 species Burkholderia cepacia -Q9HYV7 1 0.537 0.537 0.274 208964 strain Pseudomonas aeruginosa PAO1 -P45382 3 1.000 1.968 0.264 266 species Paracoccus denitrificans -B2UBB1 1 0.286 0.286 0.361 402626 strain Ralstonia pickettii 12J -P44190 1 0.980 0.980 0.376 71421 strain Haemophilus influenzae Rd KW20 -P45200 1 0.687 0.687 0.274 71421 strain Haemophilus influenzae Rd KW20 -B2UCA8 1 0.911 0.911 0.202 402626 strain Ralstonia pickettii 12J -Q8Y2D9 1 0.900 0.900 0.287 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q44264 1 0.258 0.258 0.866 645 species Aeromonas salmonicida -Q8XXE9 1 0.674 0.674 0.306 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UG86 1 0.313 0.313 0.368 402626 strain Ralstonia pickettii 12J -Q8XXY2 2 1.000 1.170 0.491 267608 strain Ralstonia pseudosolanacearum GMI1000 -P76558 1 0.416 0.416 0.205 83333 strain Escherichia coli K-12 -B2U9U9 3 0.897 2.114 0.220 402626 strain Ralstonia pickettii 12J -B2UCA2 1 1.000 1.000 0.216 402626 strain Ralstonia pickettii 12J -Q88LF9 1 0.523 0.523 0.195 160488 strain Pseudomonas putida KT2440 -Q8Y0A1 2 0.278 0.363 0.687 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UGE9 1 0.810 0.810 0.318 402626 strain Ralstonia pickettii 12J -P15078 2 0.409 0.725 0.226 83333 strain Escherichia coli K-12 -P25539 1 0.240 0.240 0.428 83333 strain Escherichia coli K-12 -D9IA43 2 0.713 1.023 0.247 316 species Stutzerimonas stutzeri -Q3K9A2 1 0.733 0.733 0.317 205922 strain Pseudomonas fluorescens Pf0-1 -B2UC75 2 0.634 1.089 0.253 402626 strain Ralstonia pickettii 12J -B2UDL1 1 0.498 0.498 0.328 402626 strain Ralstonia pickettii 12J -B2UGT5 3 0.965 1.910 0.257 402626 strain Ralstonia pickettii 12J -P20580 1 0.888 0.888 0.179 208964 strain Pseudomonas aeruginosa PAO1 -P0C7L3 1 0.963 0.963 0.186 562 species Escherichia coli -Q8XYX8 1 0.584 0.584 0.239 267608 strain Ralstonia pseudosolanacearum GMI1000 -B1Y2Y8 1 0.317 0.317 0.380 395495 strain Leptothrix cholodnii SP-6 -Q8XV10 1 0.353 0.353 0.214 267608 strain Ralstonia pseudosolanacearum GMI1000 -A1KBD3 1 0.626 0.626 0.179 418699 species Azoarcus olearius -P94364 1 0.865 0.865 0.170 224308 strain Bacillus subtilis subsp. subtilis str. 168 -Q2KXM7 1 0.160 0.160 0.466 360910 strain Bordetella avium 197N -B2UCD6 1 0.775 0.775 0.243 402626 strain Ralstonia pickettii 12J -B2UGW0 1 0.656 0.656 0.182 402626 strain Ralstonia pickettii 12J -Q5LLW7 1 0.723 0.723 0.180 246200 strain Ruegeria pomeroyi DSS-3 -Q8XW19 3 0.810 1.341 0.258 267608 strain Ralstonia pseudosolanacearum GMI1000 -A1TVP2 1 0.473 0.473 0.302 397945 strain Paracidovorax citrulli AAC00-1 -Q1LI62 1 0.329 0.329 0.514 266264 strain Cupriavidus metallidurans CH34 -C4LEY6 1 0.757 0.757 0.230 595494 strain Tolumonas auensis DSM 9187 -B1Y6I6 1 0.694 0.694 0.252 395495 strain Leptothrix cholodnii SP-6 -P96963 1 0.086 0.086 0.780 208964 strain Pseudomonas aeruginosa PAO1 -Q608P0 1 0.550 0.550 0.258 243233 strain Methylococcus capsulatus str. Bath -P17551 4 0.726 1.504 0.447 266264 strain Cupriavidus metallidurans CH34 -Q8Y3B0 1 0.260 0.260 0.764 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2UCV3 2 0.665 1.060 0.228 402626 strain Ralstonia pickettii 12J -Q8Y099 1 0.622 0.622 0.254 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q4UM33 1 0.446 0.446 0.272 315456 strain Rickettsia felis URRWXCal2 -A1TLB7 1 0.625 0.625 0.265 397945 strain Paracidovorax citrulli AAC00-1 -Q8XUZ9 1 0.097 0.097 0.325 267608 strain Ralstonia pseudosolanacearum GMI1000 -P51066 1 0.749 0.749 0.208 99287 strain Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 -B2U984 2 0.722 1.281 0.271 402626 strain Ralstonia pickettii 12J -Q06457 1 0.688 0.688 0.158 571 species Klebsiella oxytoca -P19264 1 0.740 0.740 0.202 99287 strain Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 -B2UBP2 1 0.945 0.945 0.195 402626 strain Ralstonia pickettii 12J -Q65YW9 1 0.697 0.697 0.204 303 species Pseudomonas putida -Q6N798 1 0.578 0.578 0.227 258594 strain Rhodopseudomonas palustris CGA009 -Q8XW28 2 0.631 1.185 0.197 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q54435 1 0.533 0.533 0.313 615 species Serratia marcescens -P43672 1 0.455 0.455 0.204 83333 strain Escherichia coli K-12 -Q60C64 1 0.777 0.777 0.202 243233 strain Methylococcus capsulatus str. Bath -Q8Y0H7 1 0.884 0.884 0.245 267608 strain Ralstonia pseudosolanacearum GMI1000 -A3MRX9 1 0.483 0.483 0.378 320389 strain Burkholderia mallei NCTC 10247 -Q9BUT1 1 0.498 0.498 0.346 9606 species Homo sapiens -Q8XWR1 1 0.470 0.470 0.208 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q1LS47 1 0.767 0.767 0.204 266264 strain Cupriavidus metallidurans CH34 -Q557J5 1 0.632 0.632 0.249 44689 species Dictyostelium discoideum -P64613 1 0.245 0.245 0.334 83334 serotype Escherichia coli O157:H7 -Q8XUY1 1 0.737 0.737 0.159 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q1BYL5 1 0.694 0.694 0.179 331271 strain Burkholderia orbicola AU 1054 -Q9I2F8 1 0.514 0.514 0.275 208964 strain Pseudomonas aeruginosa PAO1 -Q8Y0A5 1 0.418 0.418 0.289 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8Y0K4 1 0.165 0.165 0.664 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8U308 1 0.373 0.373 0.736 186497 strain Pyrococcus furiosus DSM 3638 -B2UFW5 1 0.106 0.106 1.000 402626 strain Ralstonia pickettii 12J -Q46WE0 1 0.538 0.538 0.182 264198 strain Cupriavidus pinatubonensis JMP134 -B2JHF9 1 0.276 0.276 0.304 391038 strain Paraburkholderia phymatum STM815 -P45175 1 0.849 0.849 0.183 71421 strain Haemophilus influenzae Rd KW20 -O30330 3 0.860 1.825 0.488 266264 strain Cupriavidus metallidurans CH34 -B2U7Y8 1 0.153 0.153 0.589 402626 strain Ralstonia pickettii 12J -Q8Y075 1 0.798 0.798 0.217 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U8U5 1 0.461 0.461 0.207 402626 strain Ralstonia pickettii 12J -A1VUC0 1 0.798 0.798 0.204 365044 strain Polaromonas naphthalenivorans CJ2 -Q8XZH7 1 0.212 0.212 0.597 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q0K980 1 0.601 0.601 0.313 381666 strain Cupriavidus necator H16 -P0AG91 1 0.067 0.067 0.664 83334 serotype Escherichia coli O157:H7 -Q1LLA9 2 0.851 1.529 0.166 266264 strain Cupriavidus metallidurans CH34 -Q8Y0Y5 1 0.452 0.452 0.384 267608 strain Ralstonia pseudosolanacearum GMI1000 -A0A0H3LKV3 2 0.444 0.726 0.319 257310 strain Bordetella bronchiseptica RB50 -C6BKZ1 3 0.858 1.908 0.194 428406 strain Ralstonia pickettii 12D -Q59091 1 0.502 0.502 0.400 62977 strain Acinetobacter baylyi ADP1 -B2UCU9 4 0.812 2.774 0.188 402626 strain Ralstonia pickettii 12J -P75908 1 0.741 0.741 0.188 83333 strain Escherichia coli K-12 -C5BEU3 1 0.430 0.430 0.695 634503 strain Edwardsiella ictaluri 93-146 -Q7VWV8 1 0.506 0.506 0.265 257313 isolate Bordetella pertussis Tohama I -P94177 4 0.822 1.582 0.266 68998 species Alcaligenes sp. CT14 -Q8XZ91 1 0.139 0.139 1.000 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XZI5 1 0.824 0.824 0.198 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q8XWY0 1 0.456 0.456 0.421 267608 strain Ralstonia pseudosolanacearum GMI1000 -B2U7R6 1 0.523 0.523 0.185 402626 strain Ralstonia pickettii 12J -Q8Y2B9 1 0.579 0.579 0.361 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q475B2 1 0.338 0.338 0.254 264198 strain Cupriavidus pinatubonensis JMP134 -Q9CP90 1 0.179 0.179 0.543 272843 strain Pasteurella multocida subsp. multocida str. Pm70 -Q5UYR3 1 0.657 0.657 0.210 272569 strain Haloarcula marismortui ATCC 43049 -Q9JHI5 1 0.458 0.458 0.250 10090 species Mus musculus -O34748 1 0.259 0.259 0.294 224308 strain Bacillus subtilis subsp. subtilis str. 168 -Q9HY07 1 0.374 0.374 0.971 208964 strain Pseudomonas aeruginosa PAO1 -Q7NX82 1 0.140 0.140 0.595 243365 strain Chromobacterium violaceum ATCC 12472 -Q8XWW3 1 0.440 0.440 0.298 267608 strain Ralstonia pseudosolanacearum GMI1000 -P37419 2 0.721 0.884 0.365 99287 strain Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 -P0ABK4 1 0.317 0.317 0.352 83334 serotype Escherichia coli O157:H7 -B2U7X3 2 0.894 1.059 0.337 402626 strain Ralstonia pickettii 12J -P0ACY5 5 0.930 4.370 0.163 83334 serotype Escherichia coli O157:H7 -Q5KUG0 1 0.030 0.030 0.890 235909 strain Geobacillus kaustophilus HTA426 -E9JFX9 1 0.415 0.415 0.269 121290 species Hyphomicrobium sulfonivorans -Q1LJQ2 1 0.855 0.855 0.182 266264 strain Cupriavidus metallidurans CH34 -Q89AN5 1 0.322 0.322 0.227 224915 strain Buchnera aphidicola str. Bp (Baizongia pistaciae) -B2UD46 1 0.295 0.295 0.430 402626 strain Ralstonia pickettii 12J -B2U8U9 1 0.327 0.327 0.275 402626 strain Ralstonia pickettii 12J -O74402 1 0.682 0.682 0.161 284812 strain Schizosaccharomyces pombe 972h- -Q8XZ47 1 0.263 0.263 0.537 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q9I5N9 1 0.392 0.392 0.248 208964 strain Pseudomonas aeruginosa PAO1 -Q476Y3 1 0.530 0.530 0.223 264198 strain Cupriavidus pinatubonensis JMP134 -Q8XBY1 1 0.985 0.985 0.139 83334 serotype Escherichia coli O157:H7 -Q8XXD0 1 0.815 0.815 0.386 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q59677 2 0.435 0.870 0.203 242619 strain Porphyromonas gingivalis W83 -Q8Y1H8 1 0.134 0.134 1.000 267608 strain Ralstonia pseudosolanacearum GMI1000 -P09980 1 0.076 0.076 0.660 83333 strain Escherichia coli K-12 -B4ED80 1 0.506 0.506 0.326 216591 strain Burkholderia cenocepacia J2315 -Q44586 3 0.957 1.685 0.166 85698 species Achromobacter xylosoxidans -Q8XV83 1 0.963 0.963 0.254 267608 strain Ralstonia pseudosolanacearum GMI1000 -Q1LIH0 1 0.821 0.821 0.458 266264 strain Cupriavidus metallidurans CH34 -P23100 1 0.370 0.370 1.000 303 species Pseudomonas putida -B2UG80 1 0.392 0.392 0.300 402626 strain Ralstonia pickettii 12J -B2UE66 2 0.835 1.290 0.177 402626 strain Ralstonia pickettii 12J -Q9ZAA1 1 0.672 0.672 0.193 287 species Pseudomonas aeruginosa -P0ABI1 2 0.759 1.058 0.198 83334 serotype Escherichia coli O157:H7 -P20372 1 0.606 0.606 0.335 62977 strain Acinetobacter baylyi ADP1 -Q949P2 1 0.922 0.922 0.146 3702 species Arabidopsis thaliana -B2U7A9 1 0.399 0.399 0.584 402626 strain Ralstonia pickettii 12J -B1Y282 2 0.981 1.961 0.380 395495 strain Leptothrix cholodnii SP-6 -Q8XVP0 1 0.301 0.301 0.661 267608 strain Ralstonia pseudosolanacearum GMI1000 -A4XSC0 1 0.487 0.487 0.230 399739 strain Ectopseudomonas mendocina ymp