From ada8950281b8cedaecca2cf305f4c826ebb2019b Mon Sep 17 00:00:00 2001
From: planemo-autoupdate <planemo-autoupdate@users.noreply.github.com>
Date: Mon, 20 Nov 2023 04:20:48 +0000
Subject: [PATCH 1/2] Updating
 workflows/data-fetching/sra-manifest-to-concatenated-fastqs from 0.2 to 0.3

---
 .../sra-manifest-to-concatenated-fastqs/CHANGELOG.md   |  5 +++++
 .../sra-manifest-to-concatenated-fastqs.ga             | 10 +++++-----
 2 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
index a3935d194..59af38b34 100644
--- a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
+++ b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.3] 2023-11-20
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1`
+
 ## [0.2] 2023-11-10
 
 ### Automatic update
diff --git a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
index fc85f267e..b6e0cb587 100644
--- a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
+++ b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
@@ -19,7 +19,7 @@
         }
     ],
     "format-version": "0.1",
-    "release": "0.2",
+    "release": "0.3",
     "license": "MIT",
     "name": "sra_manifest_to_concatenated_fastqs_parallel",
     "steps": {
@@ -360,7 +360,7 @@
         },
         "9": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1",
             "errors": null,
             "id": 9,
             "input_connections": {
@@ -416,15 +416,15 @@
                     "output_name": "output_collection_other"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "6591f049cf7e",
+                "changeset_revision": "e407b9da183a",
                 "name": "sra_tools",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"adv\": {\"seq_defline\": \"@$sn/$ri\", \"minlen\": null, \"split\": \"--split-3\", \"skip_technical\": true}, \"input\": {\"input_select\": \"file_list\", \"__current_case__\": 2, \"file_list\": {\"__class__\": \"ConnectedValue\"}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "3.0.8+galaxy0",
+            "tool_version": "3.0.8+galaxy1",
             "type": "tool",
             "uuid": "fa409017-1eea-4426-83f6-22a10b9f762c",
             "when": null,

From d30228c886385b7e73f20f2af3e983c40a032563 Mon Sep 17 00:00:00 2001
From: Marius van den Beek <m.vandenbeek@gmail.com>
Date: Mon, 20 Nov 2023 09:26:19 +0100
Subject: [PATCH 2/2] Make it a patch update

Only change is a minor change that fixes fasterq-dump under some circumstances.
---
 .../sra-manifest-to-concatenated-fastqs/CHANGELOG.md            | 2 +-
 .../sra-manifest-to-concatenated-fastqs.ga                      | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
index 59af38b34..ad99cf293 100644
--- a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
+++ b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
@@ -1,6 +1,6 @@
 # Changelog
 
-## [0.3] 2023-11-20
+## [0.2.1] 2023-11-20
 
 ### Automatic update
 - `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1`
diff --git a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
index b6e0cb587..b774725c4 100644
--- a/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
+++ b/workflows/data-fetching/sra-manifest-to-concatenated-fastqs/sra-manifest-to-concatenated-fastqs.ga
@@ -19,7 +19,7 @@
         }
     ],
     "format-version": "0.1",
-    "release": "0.3",
+    "release": "0.2.1",
     "license": "MIT",
     "name": "sra_manifest_to_concatenated_fastqs_parallel",
     "steps": {