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Updating workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 from 0.1.1 to 0.1.2 #270

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gxydevbot
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Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1

The workflow release number has been updated from 0.1.1 to 0.1.2.

@mvdbeek
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mvdbeek commented Nov 9, 2023

toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0

broken on pulsar, don't merge yet

@mvdbeek mvdbeek marked this pull request as draft November 9, 2023 10:49
@mvdbeek mvdbeek closed this Nov 13, 2023
@mvdbeek mvdbeek deleted the workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 branch November 13, 2023 09:16
@mvdbeek mvdbeek restored the workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 branch November 14, 2023 14:48
@mvdbeek mvdbeek reopened this Nov 14, 2023
@gxydevbot gxydevbot changed the title Updating workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 from 0.1.1 to 0.1.2 Updating workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 from 0.1.1 to 0.1.2 Nov 14, 2023
@mvdbeek mvdbeek force-pushed the workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 branch from f1e2d76 to b424e78 Compare November 14, 2023 16:32
@mvdbeek mvdbeek marked this pull request as ready for review November 15, 2023 16:22
@mvdbeek mvdbeek merged commit 9651576 into galaxyproject:main Nov 15, 2023
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@gxydevbot gxydevbot deleted the workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 branch November 20, 2023 04:14
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2 participants