From 6ba6934b14742aef19b7b0b36054507d3c795963 Mon Sep 17 00:00:00 2001
From: Delphine-L <lariviere.delphine@gmail.com>
Date: Fri, 27 Oct 2023 10:56:10 -0400
Subject: [PATCH] renaming the workflows

---
 .../Purge-duplicate-contigs-VGP6/.dockstore.yml            | 5 +++++
 .../CHANGELOG.md                                           | 0
 .../Purge-duplicate-contigs-VGP-tests.yml}                 | 2 +-
 .../Purge-duplicate-contigs-VGP6.ga}                       | 2 +-
 .../README.md                                              | 0
 workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml    | 7 -------
 6 files changed, 7 insertions(+), 9 deletions(-)
 create mode 100644 workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml
 rename workflows/VGP-assembly-v2/{Purgedups-VGP6 => Purge-duplicate-contigs-VGP6}/CHANGELOG.md (100%)
 rename workflows/VGP-assembly-v2/{Purgedups-VGP6/Purgedups-WF6-tests.yml => Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP-tests.yml} (97%)
 rename workflows/VGP-assembly-v2/{Purgedups-VGP6/Purgedups-WF6.ga => Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga} (99%)
 rename workflows/VGP-assembly-v2/{Purgedups-VGP6 => Purge-duplicate-contigs-VGP6}/README.md (100%)
 delete mode 100644 workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml

diff --git a/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml
new file mode 100644
index 000000000..c7300a405
--- /dev/null
+++ b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml
@@ -0,0 +1,5 @@
+version: 1.2
+workflows:
+- name: main
+  primaryDescriptorPath: /Purge-duplicate-contigs-VGP6.ga
+  subclass: Galaxy
diff --git a/workflows/VGP-assembly-v2/Purgedups-VGP6/CHANGELOG.md b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/CHANGELOG.md
similarity index 100%
rename from workflows/VGP-assembly-v2/Purgedups-VGP6/CHANGELOG.md
rename to workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/CHANGELOG.md
diff --git a/workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6-tests.yml b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP-tests.yml
similarity index 97%
rename from workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6-tests.yml
rename to workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP-tests.yml
index 90f83949e..4799789ed 100644
--- a/workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6-tests.yml
+++ b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP-tests.yml
@@ -1,4 +1,4 @@
-- doc: Test outline for Purgedups-WF6
+- doc: Test outline for Purge-duplicate-contigs-VGP6
   job:
     Hifiasm Primary assembly:
       class: File
diff --git a/workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6.ga b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga
similarity index 99%
rename from workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6.ga
rename to workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga
index 2e5cda674..74a9af046 100644
--- a/workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6.ga
+++ b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga
@@ -15,7 +15,7 @@
     "format-version": "0.1",
     "license": "CC-BY-4.0",
     "release": "0.1",
-    "name": "Purge Duplicate Contigs - WF6",
+    "name": "Purge-duplicate-contigs-VGP6",
     "steps": {
         "0": {
             "annotation": "",
diff --git a/workflows/VGP-assembly-v2/Purgedups-VGP6/README.md b/workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/README.md
similarity index 100%
rename from workflows/VGP-assembly-v2/Purgedups-VGP6/README.md
rename to workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/README.md
diff --git a/workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml b/workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml
deleted file mode 100644
index a00df3b84..000000000
--- a/workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-version: 1.2
-workflows:
-- name: main
-  primaryDescriptorPath: /Purgedups-WF6.ga
-  subclass: Galaxy
-  testParameterFiles:
-  - /Purgedups-WF6-tests.yml