From e2134edf0e574d88a630706d8c60814db50526da Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 16 Nov 2024 03:14:38 +0000 Subject: [PATCH] Update Python dependencies by running `make update-dependencies`. --- lib/galaxy/dependencies/dev-requirements.txt | 14 +++++++------- .../dependencies/pinned-lint-requirements.txt | 2 +- lib/galaxy/dependencies/pinned-requirements.txt | 12 ++++++------ .../dependencies/pinned-typecheck-requirements.txt | 10 +++++----- 4 files changed, 19 insertions(+), 19 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 4d6c7013e924..c782e31842e2 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -1,12 +1,12 @@ # This file was autogenerated by uv via the following command: # uv export --frozen --no-hashes --only-group=dev aiohappyeyeballs==2.4.3 -aiohttp==3.10.10 +aiohttp==3.10.11 aiosignal==1.3.1 alabaster==0.7.13 anyio==4.5.2 ase==3.23.0 -async-timeout==4.0.3 ; python_full_version < '3.11' +async-timeout==5.0.1 ; python_full_version < '3.11' attrs==24.2.0 axe-selenium-python==2.1.6 babel==2.16.0 @@ -33,19 +33,19 @@ darker==2.1.1 darkgraylib==1.2.1 decorator==5.1.1 ; python_full_version >= '3.9' defusedxml==0.7.1 -deprecated==1.2.14 +deprecated==1.2.15 docutils==0.20.1 dogpile-cache==1.3.3 ; python_full_version >= '3.9' exceptiongroup==1.2.2 ; python_full_version < '3.11' filelock==3.16.1 fluent-logger==0.11.1 -fonttools==4.54.1 +fonttools==4.55.0 frozenlist==1.5.0 galaxy-release-util==0.1.11 graylint==1.1.1 greenlet==3.1.1 h11==0.14.0 -httpcore==1.0.6 +httpcore==1.0.7 httpx==0.27.2 idna==3.10 imagesize==1.4.1 @@ -154,7 +154,7 @@ sniffio==1.3.1 snowballstemmer==2.2.0 sortedcontainers==2.4.0 sphinx==7.1.2 -sphinx-rtd-theme==3.0.1 +sphinx-rtd-theme==3.0.2 sphinxcontrib-applehelp==1.0.4 sphinxcontrib-devhelp==1.0.2 sphinxcontrib-htmlhelp==2.0.1 @@ -169,7 +169,7 @@ testfixtures==8.3.0 text-unidecode==1.3 tinydb==4.8.2 toml==0.10.2 -tomli==2.0.2 ; python_full_version <= '3.11' +tomli==2.1.0 ; python_full_version <= '3.11' trio==0.27.0 trio-websocket==0.11.1 tuspy==1.0.3 diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index d063a6f43020..f0afdffeb3c3 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==24.10.31 mccabe==0.7.0 pycodestyle==2.12.1 pyflakes==3.2.0 -ruff==0.7.3 +ruff==0.7.4 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 342ba9da8659..ce35113d8952 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -6,18 +6,18 @@ aiobotocore==2.15.2 aiodataloader==0.4.0 aiofiles==24.1.0 aiohappyeyeballs==2.4.3 -aiohttp==3.10.10 +aiohttp==3.10.11 aioitertools==0.12.0 aiosignal==1.3.1 alembic==1.14.0 -amqp==5.2.0 +amqp==5.3.1 annotated-types==0.7.0 anyio==4.5.2 apispec==6.6.1 appdirs==1.4.4 arcp==0.2.1 argcomplete==3.5.1 -async-timeout==4.0.3 ; python_full_version < '3.11' +async-timeout==5.0.1 ; python_full_version < '3.11' attmap==0.13.2 attrs==24.2.0 babel==2.16.0 @@ -64,7 +64,7 @@ dparse==0.6.4 edam-ontology==1.25.2 email-validator==2.2.0 exceptiongroup==1.2.2 ; python_full_version < '3.11' -fastapi-slim==0.115.4 +fastapi-slim==0.115.5 filelock==3.16.1 fissix==24.4.24 ; python_full_version >= '3.13' frozenlist==1.5.0 @@ -184,7 +184,7 @@ sortedcontainers==2.4.0 spython==0.3.14 sqlalchemy==2.0.35 sqlitedict==2.1.0 -sqlparse==0.5.1 +sqlparse==0.5.2 starlette==0.41.2 starlette-context==0.3.6 starlette-graphene3==0.6.0 @@ -194,7 +194,7 @@ tenacity==9.0.0 text-unidecode==1.3 tifffile==2023.7.10 tinydb==4.8.2 -tomli==2.0.2 ; python_full_version < '3.11' +tomli==2.1.0 ; python_full_version < '3.11' tornado==6.4.1 tqdm==4.67.0 tuspy==1.0.3 diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index eee703c6e98c..ad5c1328d2c8 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,18 +1,18 @@ # This file was autogenerated by uv via the following command: # uv export --frozen --no-hashes --only-group=typecheck annotated-types==0.7.0 -boto3-stubs==1.35.57 -botocore-stubs==1.35.57 +boto3-stubs==1.35.63 +botocore-stubs==1.35.63 cffi==1.17.1 ; platform_python_implementation != 'PyPy' cryptography==43.0.3 lxml-stubs==0.5.1 mypy==1.13.0 -mypy-boto3-s3==1.35.46 +mypy-boto3-s3==1.35.61 mypy-extensions==1.0.0 pycparser==2.22 ; platform_python_implementation != 'PyPy' pydantic==2.9.2 pydantic-core==2.23.4 -tomli==2.0.2 ; python_full_version < '3.11' +tomli==2.1.0 ; python_full_version < '3.11' types-awscrt==0.23.0 types-bleach==6.1.0.20240331 types-boto==2.49.18.20241019 @@ -27,7 +27,7 @@ types-python-slugify==8.0.2.20240310 types-pyyaml==6.0.12.20240917 types-requests==2.31.0.6 types-s3transfer==0.10.3 -types-setuptools==75.3.0.20241107 +types-setuptools==75.5.0.20241116 types-six==1.16.21.20241105 types-urllib3==1.26.25.14 typing-extensions==4.12.2