diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 5afc8c8ce588..6c8e78097228 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -18,7 +18,7 @@ cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8" celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12" certifi==2023.7.22 ; python_version >= "3.7" and python_version < "3.12" cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12" -charset-normalizer==3.3.1 ; python_version >= "3.7" and python_version < "3.12" +charset-normalizer==3.3.2 ; python_version >= "3.7" and python_version < "3.12" click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12" click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12" click-repl==0.3.0 ; python_version >= "3.7" and python_version < "3.12" @@ -64,7 +64,7 @@ markdown-it-reporter==0.0.2 ; python_version >= "3.7" and python_version < "3.12 markupsafe==2.1.3 ; python_version >= "3.7" and python_version < "3.12" matplotlib==3.5.3 ; python_version >= "3.7" and python_version < "3.8" matplotlib==3.7.3 ; python_version >= "3.8" and python_version < "3.9" -matplotlib==3.8.0 ; python_version >= "3.9" and python_version < "3.12" +matplotlib==3.8.1 ; python_version >= "3.9" and python_version < "3.12" mdit-py-plugins==0.3.5 ; python_version >= "3.7" and python_version < "3.12" mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12" mirakuru==2.5.1 ; python_version >= "3.7" and python_version < "3.12" @@ -167,7 +167,7 @@ urllib3==1.26.18 ; python_version >= "3.7" and python_version < "3.12" urllib3[socks]==1.26.18 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" watchdog==3.0.0 ; python_version >= "3.7" and python_version < "3.12" -wcwidth==0.2.8 ; python_version >= "3.7" and python_version < "3.12" +wcwidth==0.2.9 ; python_version >= "3.7" and python_version < "3.12" webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12" werkzeug==2.2.3 ; python_version >= "3.7" and python_version < "3.12" wrapt==1.15.0 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 3d894f393d0b..7d52c85998e6 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -5,6 +5,6 @@ importlib-metadata==4.2.0 mccabe==0.7.0 pycodestyle==2.9.1 pyflakes==2.5.0 -ruff==0.1.3 +ruff==0.1.4 typing_extensions==4.7.1 zipp==3.15.0 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index f7c83edfef01..6ec5a44b28e8 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -28,7 +28,7 @@ beaker==1.12.1 ; python_version >= "3.7" and python_version < "3.12" billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.12" bioblend==1.2.0 ; python_version >= "3.7" and python_version < "3.12" bleach==6.0.0 ; python_version >= "3.7" and python_version < "3.12" -boltons==23.0.0 ; python_version >= "3.7" and python_version < "3.12" +boltons==23.1.1 ; python_version >= "3.7" and python_version < "3.12" boto==2.49.0 ; python_version >= "3.7" and python_version < "3.12" botocore==1.27.59 ; python_version >= "3.7" and python_version < "3.12" bx-python==0.10.0 ; python_version >= "3.7" and python_version < "3.12" @@ -37,7 +37,7 @@ cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8" celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12" certifi==2023.7.22 ; python_version >= "3.7" and python_version < "3.12" cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12" -charset-normalizer==3.3.1 ; python_version >= "3.7" and python_version < "3.12" +charset-normalizer==3.3.2 ; python_version >= "3.7" and python_version < "3.12" cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.12" circus==0.18.0 ; python_version >= "3.7" and python_version < "3.12" click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12" @@ -106,7 +106,7 @@ mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12" mercurial==6.5.2 ; python_version >= "3.7" and python_version < "3.12" mistune==2.0.5 ; python_version >= "3.7" and python_version < "3.12" mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.12" -msal==1.24.1 ; python_version >= "3.7" and python_version < "3.12" +msal==1.25.0 ; python_version >= "3.7" and python_version < "3.12" msgpack==1.0.5 ; python_version >= "3.7" and python_version < "3.12" multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.12" mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12" @@ -181,7 +181,7 @@ six==1.16.0 ; python_version >= "3.7" and python_version < "3.12" sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.12" social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.12" sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.12" -sqlalchemy==1.4.49 ; python_version >= "3.7" and python_version < "3.12" +sqlalchemy==1.4.50 ; python_version >= "3.7" and python_version < "3.12" sqlitedict==2.1.0 ; python_version >= "3.7" and python_version < "3.12" sqlparse==0.4.4 ; python_version >= "3.7" and python_version < "3.12" starlette-context==0.3.5 ; python_version >= "3.7" and python_version < "3.12" @@ -205,7 +205,7 @@ urllib3==1.26.18 ; python_version >= "3.7" and python_version < "3.12" uvicorn==0.22.0 ; python_version >= "3.7" and python_version < "3.12" uvloop==0.18.0 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" -wcwidth==0.2.8 ; python_version >= "3.7" and python_version < "3.12" +wcwidth==0.2.9 ; python_version >= "3.7" and python_version < "3.12" webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12" webob==1.8.7 ; python_version >= "3.7" and python_version < "3.12" whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index afecd6cafdff..1b99e1bb093f 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -11,7 +11,7 @@ types-boto==2.49.18.9 ; python_version >= "3.7" and python_version < "3.12" types-contextvars==2.4.7.3 ; python_version >= "3.7" and python_version < "3.12" types-dataclasses==0.6.6 ; python_version >= "3.7" and python_version < "3.12" types-docutils==0.20.0.3 ; python_version >= "3.7" and python_version < "3.12" -types-markdown==3.5.0.0 ; python_version >= "3.7" and python_version < "3.12" +types-markdown==3.5.0.1 ; python_version >= "3.7" and python_version < "3.12" types-paramiko==3.3.0.0 ; python_version >= "3.7" and python_version < "3.12" types-pkg-resources==0.1.3 ; python_version >= "3.7" and python_version < "3.12" types-python-dateutil==2.8.19.14 ; python_version >= "3.7" and python_version < "3.12"