From 972fe8daf662b027d14bc07772e36b9f733a6140 Mon Sep 17 00:00:00 2001
From: guerler <aysam.guerler@gmail.com>
Date: Wed, 20 Nov 2024 20:52:52 +0300
Subject: [PATCH] Remove legacy

---
 .../config/heatmap_cluster.xml                |  4 ++--
 .../heatmap_cluster/static/logo.svg           | 18 ++++++++++++++++++
 .../config/heatmap_default.xml                | 19 +++++++++++++++++++
 .../heatmap_default/config/heatmap_shared.xml |  0
 .../heatmap_default/static/logo.svg           | 18 ++++++++++++++++++
 5 files changed, 57 insertions(+), 2 deletions(-)
 rename config/plugins/visualizations/{heatmap => }/heatmap_cluster/config/heatmap_cluster.xml (80%)
 create mode 100644 config/plugins/visualizations/heatmap_cluster/static/logo.svg
 create mode 100644 config/plugins/visualizations/heatmap_default/config/heatmap_default.xml
 rename config/plugins/visualizations/{heatmap => }/heatmap_default/config/heatmap_shared.xml (100%)
 create mode 100644 config/plugins/visualizations/heatmap_default/static/logo.svg

diff --git a/config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml b/config/plugins/visualizations/heatmap_cluster/config/heatmap_cluster.xml
similarity index 80%
rename from config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml
rename to config/plugins/visualizations/heatmap_cluster/config/heatmap_cluster.xml
index e14ff3aa5579..21651e125fa0 100644
--- a/config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml
+++ b/config/plugins/visualizations/heatmap_cluster/config/heatmap_cluster.xml
@@ -2,11 +2,11 @@
 <!DOCTYPE visualization SYSTEM "../../visualization.dtd">
 <visualization name="Clustered Heatmap" embeddable="false" logo="logo.cluster.svg">
     <macros>
-        <import>heatmap_shared.xml</import>
+        <import>../heatmap_default/config/heatmap_shared.xml</import>
     </macros>
     <description>Applies hierarchical clustering to a matrix using R. The data has to be provided in 3-column format. The result is displayed as clustered heatmap.</description>
     <requirements>
-        <requirement type="npm" version="0.0.0" package="@galaxyproject/heatmap"/>
+        <requirement type="npm" version="MY_NPM_PACKAGE_VERSION" package="MY_NPM_PACKAGE_NAME"/>
     </requirements>
     <expand macro="shared"/>
     <specs>
diff --git a/config/plugins/visualizations/heatmap_cluster/static/logo.svg b/config/plugins/visualizations/heatmap_cluster/static/logo.svg
new file mode 100644
index 000000000000..27fd576b39f2
--- /dev/null
+++ b/config/plugins/visualizations/heatmap_cluster/static/logo.svg
@@ -0,0 +1,18 @@
+<svg width="200" height="200" viewBox="0 0 5 5" xmlns="http://www.w3.org/2000/svg">
+  <rect x="0.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#2E3192" stroke="transparent" stroke-width="0.05" />
+</svg>
diff --git a/config/plugins/visualizations/heatmap_default/config/heatmap_default.xml b/config/plugins/visualizations/heatmap_default/config/heatmap_default.xml
new file mode 100644
index 000000000000..0dc94cf9e4e1
--- /dev/null
+++ b/config/plugins/visualizations/heatmap_default/config/heatmap_default.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
+<visualization name="Heatmap" embeddable="false" logo="logo.svg">
+    <macros>
+        <import>heatmap_shared.xml</import>
+    </macros>
+    <description>Renders a heatmap from matrix data provided in 3-column format (x, y, observation).</description>
+    <requirements>
+        <requirement type="npm" version="0.0.0" package="@galaxyproject/heatmap"/>
+    </requirements>
+    <expand macro="shared"/>
+    <specs>
+        <exports>
+            <exports>pdf</exports>
+            <exports>png</exports>
+            <exports>svg</exports>
+        </exports>
+    </specs>
+</visualization>
\ No newline at end of file
diff --git a/config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_shared.xml b/config/plugins/visualizations/heatmap_default/config/heatmap_shared.xml
similarity index 100%
rename from config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_shared.xml
rename to config/plugins/visualizations/heatmap_default/config/heatmap_shared.xml
diff --git a/config/plugins/visualizations/heatmap_default/static/logo.svg b/config/plugins/visualizations/heatmap_default/static/logo.svg
new file mode 100644
index 000000000000..41c80b8f2c16
--- /dev/null
+++ b/config/plugins/visualizations/heatmap_default/static/logo.svg
@@ -0,0 +1,18 @@
+<svg width="200" height="200" viewBox="0 0 5 5" xmlns="http://www.w3.org/2000/svg">
+  <rect x="0.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="0.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="1.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="2.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="0.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="1.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="2.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+  <rect x="3.0" y="3.0" width="0.8" height="0.8" rx="0.2" ry="0.2" fill="#E30A17" stroke="transparent" stroke-width="0.05" />
+</svg>