diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index cdf50cd3dd00..73e10ec34d11 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -76,8 +76,8 @@ mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12" myst-parser==1.0.0 ; python_version >= "3.7" and python_version < "3.12" numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" -numpy==1.26.0 ; python_version >= "3.9" and python_version < "3.12" -outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.12" +numpy==1.26.1 ; python_version >= "3.9" and python_version < "3.12" +outcome==1.3.0 ; python_version >= "3.7" and python_version < "3.12" packaging==23.2 ; python_version >= "3.7" and python_version < "3.12" pathspec==0.11.2 ; python_version >= "3.7" and python_version < "3.12" pillow==9.5.0 ; python_version >= "3.7" and python_version < "3.12" @@ -89,7 +89,7 @@ pluggy==1.2.0 ; python_version >= "3.7" and python_version < "3.12" port-for==0.7.1 ; python_version >= "3.7" and python_version < "3.12" prettytable==3.7.0 ; python_version >= "3.7" and python_version < "3.12" prompt-toolkit==3.0.39 ; python_version >= "3.7" and python_version < "3.12" -psutil==5.9.5 ; python_version >= "3.7" and python_version < "3.12" and sys_platform != "cygwin" +psutil==5.9.6 ; python_version >= "3.7" and python_version < "3.12" and sys_platform != "cygwin" py==1.11.0 ; python_version >= "3.7" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12" pyee==9.0.4 ; python_version >= "3.7" and python_version < "3.12" @@ -150,7 +150,7 @@ sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.7" and python_version < "3.12 sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.7" and python_version < "3.12" sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.7" and python_version < "3.12" statsd==4.0.1 ; python_version >= "3.7" and python_version < "3.12" -testfixtures==7.2.0 ; python_version >= "3.7" and python_version < "3.12" +testfixtures==7.2.2 ; python_version >= "3.7" and python_version < "3.12" text-unidecode==1.3 ; python_version >= "3.7" and python_version < "3.12" tinydb==4.8.0 ; python_version >= "3.7" and python_version < "3.12" toml==0.10.2 ; python_version >= "3.7" and python_version < "3.12" @@ -163,8 +163,8 @@ twine==4.0.2 ; python_version >= "3.7" and python_version < "3.12" typed-ast==1.5.5 ; python_version < "3.8" and implementation_name == "cpython" and python_version >= "3.7" types-pyyaml==6.0.12.12 ; python_version >= "3.7" and python_version < "3.12" typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12" -urllib3==1.26.17 ; python_version >= "3.7" and python_version < "3.12" -urllib3[socks]==1.26.17 ; python_version >= "3.7" and python_version < "3.12" +urllib3==1.26.18 ; python_version >= "3.7" and python_version < "3.12" +urllib3[socks]==1.26.18 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" watchdog==3.0.0 ; python_version >= "3.7" and python_version < "3.12" wcwidth==0.2.8 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 08d44e583e9b..b2478f72eb60 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -5,6 +5,6 @@ importlib-metadata==4.2.0 mccabe==0.7.0 pycodestyle==2.9.1 pyflakes==2.5.0 -ruff==0.0.292 +ruff==0.1.1 typing_extensions==4.7.1 zipp==3.15.0 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 61e907431feb..eaebd043c2cf 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -114,21 +114,21 @@ networkx==2.5 ; python_version >= "3.7" and python_version < "3.12" nodeenv==1.8.0 ; python_version >= "3.7" and python_version < "3.12" numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" -numpy==1.26.0 ; python_version >= "3.9" and python_version < "3.12" +numpy==1.26.1 ; python_version >= "3.9" and python_version < "3.12" oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.12" orjson==3.9.7 ; python_version >= "3.7" and python_version < "3.12" oyaml==1.0 ; python_version >= "3.7" and python_version < "3.12" packaging==23.2 ; python_version >= "3.7" and python_version < "3.12" paramiko==3.3.1 ; python_version >= "3.7" and python_version < "3.12" parsley==1.3 ; python_version >= "3.7" and python_version < "3.12" -paste==3.6.0 ; python_version >= "3.7" and python_version < "3.12" +paste==3.7.1 ; python_version >= "3.7" and python_version < "3.12" pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.12" pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.12" pkgutil-resolve-name==1.3.10 ; python_version >= "3.7" and python_version < "3.9" promise==2.3 ; python_version >= "3.7" and python_version < "3.12" prompt-toolkit==3.0.39 ; python_version >= "3.7" and python_version < "3.12" prov==1.5.1 ; python_version >= "3.7" and python_version < "3.12" -psutil==5.9.5 ; python_version >= "3.7" and python_version < "3.12" +psutil==5.9.6 ; python_version >= "3.7" and python_version < "3.12" pulsar-galaxy-lib==0.15.5 ; python_version >= "3.7" and python_version < "3.12" pyasn1==0.5.0 ; python_version >= "3.7" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12" @@ -143,7 +143,7 @@ pygments==2.16.1 ; python_version >= "3.7" and python_version < "3.12" pyjwt==2.8.0 ; python_version >= "3.7" and python_version < "3.12" pyjwt[crypto]==2.8.0 ; python_version >= "3.7" and python_version < "3.12" pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.12" -pylibmagic==0.4.0 ; python_version >= "3.7" and python_version < "3.12" +pylibmagic==0.5.0 ; python_version >= "3.7" and python_version < "3.12" pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12" pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12" pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12" @@ -201,7 +201,7 @@ typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12" tzdata==2023.3 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows" tzlocal==5.1 ; python_version >= "3.7" and python_version < "3.12" ubiquerg==0.6.3 ; python_version >= "3.7" and python_version < "3.12" -urllib3==1.26.17 ; python_version >= "3.7" and python_version < "3.12" +urllib3==1.26.18 ; python_version >= "3.7" and python_version < "3.12" uvicorn==0.22.0 ; python_version >= "3.7" and python_version < "3.12" uvloop==0.18.0 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12"