From 8dd31214decc3edfe1febaa23c37044a1c1e2435 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 23 Mar 2024 03:13:35 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 18 ++++++++++-------- .../dependencies/pinned-lint-requirements.txt | 2 +- .../dependencies/pinned-requirements.txt | 18 +++++++++--------- 3 files changed, 20 insertions(+), 18 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 7ec1e29610a4..74862f5f6b5f 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -18,7 +18,7 @@ celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13" certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13" cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" -click-didyoumean==0.3.0 ; python_version >= "3.8" and python_version < "3.13" +click-didyoumean==0.3.1 ; python_version >= "3.8" and python_version < "3.13" click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.13" click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.13" click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" @@ -47,16 +47,18 @@ httpcore==1.0.4 ; python_version >= "3.8" and python_version < "3.13" httpx==0.27.0 ; python_version >= "3.8" and python_version < "3.13" idna==3.6 ; python_version >= "3.8" and python_version < "3.13" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -importlib-metadata==7.0.2 ; python_version >= "3.8" and python_version < "3.13" -importlib-resources==6.3.1 ; python_version >= "3.8" and python_version < "3.10" +importlib-metadata==7.1.0 ; python_version >= "3.8" and python_version < "3.13" +importlib-resources==6.4.0 ; python_version >= "3.8" and python_version < "3.10" iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.13" isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" isort==5.13.2 ; python_version >= "3.8" and python_version < "3.13" jaraco-classes==3.3.1 ; python_version >= "3.8" and python_version < "3.13" +jaraco-context==4.3.0 ; python_version >= "3.8" and python_version < "3.13" +jaraco-functools==4.0.0 ; python_version >= "3.8" and python_version < "3.13" jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.13" junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13" -keyring==24.3.1 ; python_version >= "3.8" and python_version < "3.13" +keyring==25.0.0 ; python_version >= "3.8" and python_version < "3.13" kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.13" kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13" lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" @@ -93,22 +95,22 @@ psutil==5.9.8 ; python_version >= "3.8" and python_version < "3.13" and sys_plat psycopg==3.1.18 ; python_version >= "3.8" and python_version < "3.13" pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" pyee==11.0.1 ; python_version >= "3.8" and python_version < "3.13" -pygithub==2.2.0 ; python_version >= "3.8" and python_version < "3.13" +pygithub==2.3.0 ; python_version >= "3.8" and python_version < "3.13" pygments==2.17.2 ; python_version >= "3.8" and python_version < "3.13" pyjwt[crypto]==2.8.0 ; python_version >= "3.8" and python_version < "3.13" pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13" pyparsing==3.1.2 ; python_version >= "3.8" and python_version < "3.13" pyproject-hooks==1.0.0 ; python_version >= "3.8" and python_version < "3.13" pysocks==1.7.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-asyncio==0.23.5.post1 ; python_version >= "3.8" and python_version < "3.13" +pytest-asyncio==0.23.6 ; python_version >= "3.8" and python_version < "3.13" pytest-base-url==2.1.0 ; python_version >= "3.8" and python_version < "3.13" pytest-celery==0.0.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-cov==4.1.0 ; python_version >= "3.8" and python_version < "3.13" +pytest-cov==5.0.0 ; python_version >= "3.8" and python_version < "3.13" pytest-html==4.1.1 ; python_version >= "3.8" and python_version < "3.13" pytest-httpserver==1.0.10 ; python_version >= "3.8" and python_version < "3.13" pytest-json-report==1.5.0 ; python_version >= "3.8" and python_version < "3.13" pytest-metadata==3.1.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.13" +pytest-mock==3.14.0 ; python_version >= "3.8" and python_version < "3.13" pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13" pytest-postgresql==6.0.0 ; python_version >= "3.8" and python_version < "3.13" pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 284a3352dfbc..ab54c17d8670 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==24.2.6 mccabe==0.7.0 pycodestyle==2.11.1 pyflakes==3.2.0 -ruff==0.3.3 +ruff==0.3.4 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index be8b9ffdbf68..7363aeb182c6 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -42,7 +42,7 @@ cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.13" circus==0.18.0 ; python_version >= "3.8" and python_version < "3.13" -click-didyoumean==0.3.0 ; python_version >= "3.8" and python_version < "3.13" +click-didyoumean==0.3.1 ; python_version >= "3.8" and python_version < "3.13" click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.13" click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.13" click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" @@ -83,12 +83,12 @@ greenlet==3.0.3 ; python_version >= "3.8" and (platform_machine == "aarch64" or gunicorn==21.2.0 ; python_version >= "3.8" and python_version < "3.13" gxformat2==0.18.0 ; python_version >= "3.8" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -h5grove==2.0.0 ; python_version >= "3.8" and python_version < "3.13" +h5grove==2.1.0 ; python_version >= "3.8" and python_version < "3.13" h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.13" humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.13" idna==3.6 ; python_version >= "3.8" and python_version < "3.13" -importlib-metadata==7.0.2 ; python_version >= "3.8" and python_version < "3.13" -importlib-resources==6.3.1 ; python_version >= "3.8" and python_version < "3.9" +importlib-metadata==7.1.0 ; python_version >= "3.8" and python_version < "3.13" +importlib-resources==6.4.0 ; python_version >= "3.8" and python_version < "3.9" isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.13" isal==1.6.1 ; python_version >= "3.8" and python_version < "3.13" isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" @@ -105,10 +105,10 @@ markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" markdown==3.6 ; python_version >= "3.8" and python_version < "3.13" markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -mercurial==6.7 ; python_version >= "3.8" and python_version < "3.13" +mercurial==6.7.1 ; python_version >= "3.8" and python_version < "3.13" mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.13" mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -msal==1.27.0 ; python_version >= "3.8" and python_version < "3.13" +msal==1.28.0 ; python_version >= "3.8" and python_version < "3.13" msgpack==1.0.8 ; python_version >= "3.8" and python_version < "3.13" multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" @@ -124,7 +124,7 @@ paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.13" parsley==1.3 ; python_version >= "3.8" and python_version < "3.13" paste==3.8.0 ; python_version >= "3.8" and python_version < "3.13" pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.13" -pebble==5.0.6 ; python_version >= "3.8" and python_version < "3.13" +pebble==5.0.7 ; python_version >= "3.8" and python_version < "3.13" pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.13" pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9" promise==2.3 ; python_version >= "3.8" and python_version < "3.13" @@ -162,7 +162,7 @@ referencing==0.34.0 ; python_version >= "3.8" and python_version < "3.13" refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13" regex==2023.12.25 ; python_version >= "3.8" and python_version < "3.13" repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13" -requests-oauthlib==1.4.0 ; python_version >= "3.8" and python_version < "3.13" +requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.13" requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.13" requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13" @@ -203,7 +203,7 @@ tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13" tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.13" ubiquerg==0.7.0 ; python_version >= "3.8" and python_version < "3.13" urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.13" -uvicorn==0.27.1 ; python_version >= "3.8" and python_version < "3.13" +uvicorn==0.29.0 ; python_version >= "3.8" and python_version < "3.13" uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.13" vine==5.1.0 ; python_version >= "3.8" and python_version < "3.13" wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.13"