diff --git a/test/functional/tools/format_source_in_conditional.xml b/test/functional/tools/format_source_in_conditional.xml
index c3ffe0c70728..7bf0de04e5bd 100644
--- a/test/functional/tools/format_source_in_conditional.xml
+++ b/test/functional/tools/format_source_in_conditional.xml
@@ -26,7 +26,7 @@
         </conditional>
     </inputs>
     <outputs>
-        <data name="output1" format_source="cond|input1"/><!-- format_source should only work for "no_extra_nesting" -->
+        <data name="output1" format_source="cond|input1"/><!-- format_source should work for both cases -->
         <data name="output2" format_source="cond|inner_cond|input1"/><!-- format_source should only work for "extra_nesting" -->
         <data name="output3" format_source="input1"/><!-- format_source with legacy behavior -->
     </outputs>
@@ -47,9 +47,9 @@
                     <param name="input1" value="1.tabular" ftype="tsv"/>
                 </conditional>
             </conditional>
-            <output name="output1" value="1.tabular" ftype="data" lines_diff="2"/>
+            <output name="output1" value="1.tabular" ftype="tsv" lines_diff="2"/>
             <output name="output2" value="1.tabular" ftype="tsv" lines_diff="2"/>
-            <output name="output3" value="1.tabular" ftype="tsv" lines_diff="2"/>
+            <output name="output3" value="1.tabular" ftype="data" lines_diff="2"/>
         </test>
     </tests>
 </tool>