From 198814b1200956798e1122ce777c3a9b9660aca0 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 30 Mar 2024 03:11:22 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 22 +++++++++---------- .../dependencies/pinned-requirements.txt | 10 ++++----- .../pinned-typecheck-requirements.txt | 6 ++--- 3 files changed, 19 insertions(+), 19 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 74862f5f6b5f..419d7da4aace 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -12,7 +12,7 @@ backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9" billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.13" black==24.3.0 ; python_version >= "3.8" and python_version < "3.13" -build==1.1.1 ; python_version >= "3.8" and python_version < "3.13" +build==1.2.1 ; python_version >= "3.8" and python_version < "3.13" cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13" certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13" @@ -29,21 +29,21 @@ coverage[toml]==7.4.4 ; python_version >= "3.8" and python_version < "3.13" cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" cwltest==2.5.20240304113812 ; python_version >= "3.8" and python_version < "3.13" cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13" -darker==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -darkgraylib==1.0.0 ; python_version >= "3.8" and python_version < "3.13" +darker==2.1.0 ; python_version >= "3.8" and python_version < "3.13" +darkgraylib==1.1.1 ; python_version >= "3.8" and python_version < "3.13" defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" deprecated==1.2.14 ; python_version >= "3.8" and python_version < "3.13" docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.13" exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" -filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13" +filelock==3.13.3 ; python_version >= "3.8" and python_version < "3.13" fluent-logger==0.11.0 ; python_version >= "3.8" and python_version < "3.13" fonttools==4.50.0 ; python_version >= "3.8" and python_version < "3.13" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" galaxy-release-util==0.1.7 ; python_version >= "3.8" and python_version < "3.13" -graylint==1.0.0 ; python_version >= "3.8" and python_version < "3.13" +graylint==1.0.1 ; python_version >= "3.8" and python_version < "3.13" greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -httpcore==1.0.4 ; python_version >= "3.8" and python_version < "3.13" +httpcore==1.0.5 ; python_version >= "3.8" and python_version < "3.13" httpx==0.27.0 ; python_version >= "3.8" and python_version < "3.13" idna==3.6 ; python_version >= "3.8" and python_version < "3.13" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13" @@ -52,7 +52,7 @@ importlib-resources==6.4.0 ; python_version >= "3.8" and python_version < "3.10" iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.13" isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" isort==5.13.2 ; python_version >= "3.8" and python_version < "3.13" -jaraco-classes==3.3.1 ; python_version >= "3.8" and python_version < "3.13" +jaraco-classes==3.4.0 ; python_version >= "3.8" and python_version < "3.13" jaraco-context==4.3.0 ; python_version >= "3.8" and python_version < "3.13" jaraco-functools==4.0.0 ; python_version >= "3.8" and python_version < "3.13" jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" @@ -60,7 +60,7 @@ jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.13" junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13" keyring==25.0.0 ; python_version >= "3.8" and python_version < "3.13" kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.13" -kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13" +kombu==5.3.6 ; python_version >= "3.8" and python_version < "3.13" lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.13" @@ -76,7 +76,7 @@ msgpack==1.0.8 ; python_version >= "3.8" and python_version < "3.13" multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" myst-parser==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -nh3==0.2.15 ; python_version >= "3.8" and python_version < "3.13" +nh3==0.2.17 ; python_version >= "3.8" and python_version < "3.13" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==1.26.4 ; python_version >= "3.9" and python_version < "3.13" outcome==1.3.0.post0 ; python_version >= "3.8" and python_version < "3.13" @@ -93,7 +93,7 @@ prettytable==3.10.0 ; python_version >= "3.8" and python_version < "3.13" prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.13" psutil==5.9.8 ; python_version >= "3.8" and python_version < "3.13" and sys_platform != "cygwin" psycopg==3.1.18 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" pyee==11.0.1 ; python_version >= "3.8" and python_version < "3.13" pygithub==2.3.0 ; python_version >= "3.8" and python_version < "3.13" pygments==2.17.2 ; python_version >= "3.8" and python_version < "3.13" @@ -134,7 +134,7 @@ schema-salad==8.5.20240311110950 ; python_version >= "3.8" and python_version < scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9" scipy==1.12.0 ; python_version >= "3.9" and python_version < "3.13" secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" -selenium==4.18.1 ; python_version >= "3.8" and python_version < "3.13" +selenium==4.19.0 ; python_version >= "3.8" and python_version < "3.13" seletools==1.4.0 ; python_version >= "3.8" and python_version < "3.13" setuptools==69.2.0 ; python_version >= "3.8" and python_version < "3.13" six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 7363aeb182c6..74654f0bacb6 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -67,7 +67,7 @@ edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13" email-validator==2.1.1 ; python_version >= "3.8" and python_version < "3.13" exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" fastapi==0.110.0 ; python_version >= "3.8" and python_version < "3.13" -filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13" +filelock==3.13.3 ; python_version >= "3.8" and python_version < "3.13" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" fs==2.4.16 ; python_version >= "3.8" and python_version < "3.13" fsspec==2023.12.2 ; python_version >= "3.8" and python_version < "3.13" @@ -97,7 +97,7 @@ jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.13" jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.13" jsonschema-specifications==2023.12.1 ; python_version >= "3.8" and python_version < "3.13" jsonschema==4.21.1 ; python_version >= "3.8" and python_version < "3.13" -kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13" +kombu==5.3.6 ; python_version >= "3.8" and python_version < "3.13" lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.13" lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" mako==1.3.2 ; python_version >= "3.8" and python_version < "3.13" @@ -105,7 +105,7 @@ markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" markdown==3.6 ; python_version >= "3.8" and python_version < "3.13" markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -mercurial==6.7.1 ; python_version >= "3.8" and python_version < "3.13" +mercurial==6.7.2 ; python_version >= "3.8" and python_version < "3.13" mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.13" mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13" msal==1.28.0 ; python_version >= "3.8" and python_version < "3.13" @@ -117,7 +117,7 @@ nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.13" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==1.26.4 ; python_version >= "3.9" and python_version < "3.13" oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -orjson==3.9.15 ; python_version >= "3.8" and python_version < "3.13" +orjson==3.10.0 ; python_version >= "3.8" and python_version < "3.13" oyaml==1.0 ; python_version >= "3.8" and python_version < "3.13" packaging==24.0 ; python_version >= "3.8" and python_version < "3.13" paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.13" @@ -132,7 +132,7 @@ prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.13" prov==1.5.1 ; python_version >= "3.8" and python_version < "3.13" psutil==5.9.8 ; python_version >= "3.8" and python_version < "3.13" pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13" pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13" pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 4ae039d3aee3..191f63a7fb18 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -4,15 +4,15 @@ cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" mypy==1.9.0 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13" pydantic==2.5.3 ; python_version >= "3.8" and python_version < "3.13" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" -types-bleach==6.1.0.20240311 ; python_version >= "3.8" and python_version < "3.13" +types-bleach==6.1.0.20240331 ; python_version >= "3.8" and python_version < "3.13" types-boto==2.49.18.20240205 ; python_version >= "3.8" and python_version < "3.13" types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.13" types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.13" -types-docutils==0.20.0.20240317 ; python_version >= "3.8" and python_version < "3.13" +types-docutils==0.20.0.20240331 ; python_version >= "3.8" and python_version < "3.13" types-html5lib==1.1.11.20240228 ; python_version >= "3.8" and python_version < "3.13" types-markdown==3.6.0.20240316 ; python_version >= "3.8" and python_version < "3.13" types-paramiko==3.4.0.20240311 ; python_version >= "3.8" and python_version < "3.13"