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OSError: Error reading file '/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml': failed to load external entity "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" #503

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HelloYLee opened this issue Oct 18, 2024 · 2 comments

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@HelloYLee
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HI, I didn't deploy s3fs or cvmfs but I use aliyun cloud oss bucket to create refdata pv & pvc, but some pods failed to start and I check pod logs found "
OSError: Error reading file '/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml': failed to load external entity "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml"
"
I found that /cvmfs/data.galaxyproject.org/ mounted to refdata pvc(oss bucket), but I have no idea how to get this data, please help!

@afgane
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afgane commented Oct 18, 2024

Thanks for reporting this. We noticed a similar issue yesterday and are looking into it but haven't gotten to the bottom of it yet. Will update here as things progress.

@ksuderman
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ksuderman commented Oct 23, 2024

@HelloYLee could you please try again? This may have been a transient error somewhere that seems to have resolved itself, at least my test cases are working again.

Nevermind, the resolution seems to have been a transient anomaly and /cvmfs/data.galaxyproject.org is broken again...

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