From ba25870137f2041a901fe4db1fe7bd85e293a1a2 Mon Sep 17 00:00:00 2001 From: Enis Afgan Date: Tue, 19 Nov 2024 17:06:25 -0500 Subject: [PATCH] Use the newly-supported shorthand tool ids for the sanitize allowlist --- galaxy/values.yaml | 59 +++++++++++++--------------------------------- 1 file changed, 17 insertions(+), 42 deletions(-) diff --git a/galaxy/values.yaml b/galaxy/values.yaml index 73ad2933..6598b860 100644 --- a/galaxy/values.yaml +++ b/galaxy/values.yaml @@ -599,48 +599,23 @@ configs: sanitize_allowlist.txt: | - toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.7+galaxy0 - toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.7.0+galaxy0 - toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.3.1+galaxy0 - toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0 - toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1 - toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 - toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 - toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 - toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72 - toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.48+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.44+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.28.1+galaxy2 - toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.9.1+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6 - toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.5.6+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.0.5.0 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6 - toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.5.0 - toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.6.2+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3 - toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0.1+galaxy1 - toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.0+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/5.2+galaxy0 - toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3r.1 - toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy2 - toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1 - toolshed.g2.bx.psu.edu/repos/bgruening/plotly_regression_performance_plots/plotly_regression_performance_plots/0.1 - toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.2 - toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.1 + toolshed.g2.bx.psu.edu/repos/bgruening/diff/ + toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/ + toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/ + toolshed.g2.bx.psu.edu/repos/devteam/fastqc/ + toolshed.g2.bx.psu.edu/repos/iuc/dexseq/ + toolshed.g2.bx.psu.edu/repos/iuc/fastp/ + toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/ + toolshed.g2.bx.psu.edu/repos/iuc/macs2/ + toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/ + toolshed.g2.bx.psu.edu/repos/iuc/multiqc/ + toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/ + toolshed.g2.bx.psu.edu/repos/iuc/quast/ + toolshed.g2.bx.psu.edu/repos/iuc/seurat/ + toolshed.g2.bx.psu.edu/repos/iuc/snpeff/ + toolshed.g2.bx.psu.edu/repos/bgruening/plotly_regression_performance_plots/ + toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/ + toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/ build_sites.yml: - type: ucsc file: "{{if .Values.refdata.enabled}}/cvmfs/data.galaxyproject.org/managed/location/ucsc_build_sites.txt{{else}}/galaxy/server/tool-data/shared/ucsc/ucsc_build_sites.txt.sample{{end}}"