diff --git a/src/junctions/junctions_extractor.h b/src/junctions/junctions_extractor.h index a95d199..0b14404 100644 --- a/src/junctions/junctions_extractor.h +++ b/src/junctions/junctions_extractor.h @@ -196,8 +196,23 @@ class JunctionsExtractor { region_ = "."; ref_ = "NA"; } - JunctionsExtractor(string bam1, string region1, int strandness1, string strand_tag1, uint32_t min_anchor_length1, uint32_t min_intron_length1, uint32_t max_intron_length1, string ref1) : - bam_(bam1), region_(region1), strandness_(strandness1), strand_tag_(strand_tag1), min_anchor_length_(min_anchor_length1), min_intron_length_(min_anchor_length1), max_intron_length_(max_intron_length1), ref_(ref1){ + JunctionsExtractor( + string bam1, + string region1, + int strandness1, + string strand_tag1, + uint32_t min_anchor_length1, + uint32_t min_intron_length1, + uint32_t max_intron_length1, + string ref1) : + bam_(bam1), + region_(region1), + strandness_(strandness1), + strand_tag_(strand_tag1), + min_anchor_length_(min_anchor_length1), + min_intron_length_(min_intron_length1), + max_intron_length_(max_intron_length1), + ref_(ref1) { junctions_sorted_ = false; output_file_ = "NA"; output_barcodes_file_ = "NA";