Requirements
CMake >= 3.10.0
g++ >= 7
python3-dev
Clone the repo
git clone https://github.com/fporrmann/FPG.git
cd FPG/PythonModule
Build the Module
mkdir build
cd build
cmake ..
make
The Python module (Linux: fim.so; Windows: fim.pyd) can be found in the build and evaluation directory.
Build the Python module as described in the installation section.
Requirements / Python-Modules
python3
numpy
json
Execute a test using the desired test configuration
cd FPG/Evaluation
python3 runTest.py <CONFIG>
Test Configurations
| Test # | Length | Neurons | Config-File |
|---|---|---|---|
| 1 | 22.32s | 150 | cfg/movement_PGHF.json |
| 2 | 16min. 43s | 150 | cfg/test_long.json |
| 3 | 5s | 150 | cfg/test_short.json |
| 4 | 22.32s | 300 | cfg/test_300n.json |
| 5 | 22.32s | 450 | cfg/test_450n.json |
The electrophysiological data is imported via GIN as a submodule. A GIN account is necessary to download the data.
Requirements / Python-Modules
# create the conda environment
cd DataAcquisition
conda env create -f environment.yml
conda activate fpg
Create data for evaluation
# run data download, preprocess and save workflow
./preprocess_data.sh