-
Notifications
You must be signed in to change notification settings - Fork 291
482 lines (469 loc) · 17.6 KB
/
pythonbuild.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
name: Build
# Schedule runs to run twice a day
on:
push:
branches:
- master
- 'release-v**'
pull_request:
schedule:
- cron: "0 13 * * *" # This schedule runs at 1pm UTC every day
env:
FLYTE_SDK_LOGGING_LEVEL: 10 # debug
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number }}
cancel-in-progress: true
jobs:
detect-python-versions:
runs-on: ubuntu-latest
outputs:
python-versions: ${{ env.python_versions }}
steps:
- name: Set Python versions for run
run: |
if [[ ${{ github.event_name }} == "schedule" ]]; then
echo "python_versions=[\"3.8\",\"3.9\",\"3.10\",\"3.11\",\"3.12\"]" >> $GITHUB_ENV
else
echo "python_versions=[\"3.9\", \"3.12\"]" >> $GITHUB_ENV
fi
build:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
steps:
- uses: actions/checkout@v4
- name: "Clear action cache"
uses: ./.github/actions/clear-action-cache
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip uninstall --system pandas pyarrow
uv pip freeze
- name: Test with coverage
run: |
make unit_test_codecov
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
files: coverage.xml
build-with-extras:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
steps:
- uses: actions/checkout@v4
- name: "Clear action cache"
uses: ./.github/actions/clear-action-cache
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip uninstall --system pandas pyarrow
uv pip freeze
- name: Run extras unit tests with coverage
# Skip this step if running on python 3.12 due to https://github.com/tensorflow/tensorflow/issues/62003
# and https://github.com/pytorch/pytorch/issues/110436
if: ${{ matrix.python-version != '3.12' }}
run: |
make unit_test_extras_codecov
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
files: coverage.xml
build-with-pandas:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
pandas: ["pandas<2.0.0", "pandas>=2.0.0"]
numpy: ["numpy<2.0.0", "numpy>=2.0.0"]
exclude:
- numpy: "numpy>=2.0.0"
pandas: "pandas<2.0.0"
- numpy: "numpy<2.0.0"
pandas: "pandas>=2.0.0"
- numpy: "numpy>=2.0.0"
python-version: "3.8"
steps:
- uses: actions/checkout@v4
- name: "Clear action cache"
uses: ./.github/actions/clear-action-cache
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip install --system --force-reinstall "${{ matrix.pandas }}" "${{ matrix.numpy }}"
uv pip freeze
- name: Test with coverage
run: |
make unit_test_codecov
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
files: coverage.xml
test-hypothesis:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip freeze
- name: Test with coverage
env:
FLYTEKIT_HYPOTHESIS_PROFILE: ci
run: |
make unit_test_hypothesis
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
files: coverage.xml
test-serialization:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip freeze
- name: Test with coverage
run: |
make test_serialization_codecov
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
files: coverage.xml
integration:
needs:
- detect-python-versions
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
makefile-cmd:
[integration_test_codecov, integration_test_lftransfers_codecov]
steps:
# As described in https://github.com/pypa/setuptools_scm/issues/414, SCM needs git history
# and tags to work.
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: "Clear action cache"
uses: ./.github/actions/clear-action-cache # sandbox has disk pressure, so we need to clear the cache to get more disk space.
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }}
- name: Install dependencies
run: |
pip install uv
make setup-global-uv
uv pip freeze
- name: Install FlyteCTL
uses: unionai-oss/flytectl-setup-action@master
- name: Setup Flyte Sandbox
run: |
flytectl demo start
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
with:
driver-opts: |
image=moby/buildkit:master
network=host
- name: Build and push to local registry
uses: docker/build-push-action@v5
with:
context: .
file: Dockerfile.dev
build-args: |
PYTHON_VERSION=${{ matrix.python-version }}
PSEUDO_VERSION=1.999.0dev0
push: true
tags: localhost:30000/flytekit:dev
cache-from: type=gha
cache-to: type=gha,mode=max
- name: Integration Test with coverage
env:
FLYTEKIT_IMAGE: localhost:30000/flytekit:dev
FLYTEKIT_CI: 1
PYTEST_OPTS: -n2
run: |
make ${{ matrix.makefile-cmd }}
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
build-plugins:
needs:
- build
- detect-python-versions
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}}
plugin-names:
# Please maintain an alphabetical order in the following list
- flytekit-airflow
- flytekit-async-fsspec
- flytekit-aws-athena
- flytekit-aws-batch
- flytekit-aws-sagemaker
- flytekit-bigquery
- flytekit-comet-ml
- flytekit-dask
- flytekit-data-fsspec
- flytekit-dbt
- flytekit-deck-standard
# TODO: remove dolt plugin - https://github.com/flyteorg/flyte/issues/5350
# flytekit-dolt
- flytekit-duckdb
- flytekit-envd
- flytekit-flyteinteractive
- flytekit-greatexpectations
- flytekit-hive
- flytekit-huggingface
- flytekit-identity-aware-proxy
- flytekit-inference
- flytekit-k8s-pod
- flytekit-kf-mpi
- flytekit-kf-pytorch
- flytekit-kf-tensorflow
- flytekit-mlflow
- flytekit-mmcloud
- flytekit-modin
- flytekit-neptune
- flytekit-onnx-pytorch
- flytekit-onnx-scikitlearn
# onnx-tensorflow needs a version of tensorflow that does not work with protobuf>4.
# The issue is being tracked on the tensorflow side in https://github.com/tensorflow/tensorflow/issues/53234#issuecomment-1330111693
# flytekit-onnx-tensorflow
- flytekit-omegaconf
- flytekit-openai
- flytekit-pandera
- flytekit-papermill
- flytekit-polars
- flytekit-ray
- flytekit-snowflake
- flytekit-spark
- flytekit-sqlalchemy
- flytekit-vaex
- flytekit-whylogs
exclude:
- python-version: 3.8
plugin-names: "flytekit-aws-sagemaker"
- python-version: 3.9
plugin-names: "flytekit-aws-sagemaker"
# flytekit-modin depends on ray which does not have a 3.11 wheel yet.
# Issue tracked in https://github.com/ray-project/ray/issues/27881
- python-version: 3.11
plugin-names: "flytekit-modin"
- python-version: 3.11
plugin-names: "flytekit-ray"
# Great-expectations does not support python 3.11 due to sqlachemy>=2.0.0
# not being supported yet:
# https://github.com/great-expectations/great_expectations/issues/7020
- python-version: 3.11
plugin-names: "flytekit-greatexpectations"
# onnxruntime does not support python 3.10 yet
# https://github.com/microsoft/onnxruntime/issues/9782
- python-version: 3.11
plugin-names: "flytekit-onnx-pytorch"
- python-version: 3.11
plugin-names: "flytekit-onnx-scikitlearn"
- python-version: 3.11
plugin-names: "flytekit-onnx-tensorflow"
# vaex currently doesn't support python 3.11
- python-version: 3.11
plugin-names: "flytekit-vaex"
# whylogs does support python 3.11 dataclass restrictions
# See: https://github.com/flyteorg/flytekit/actions/runs/4493746408/jobs/7905368664
- python-version: 3.11
plugin-names: "flytekit-whylogs"
# apache-beam, one of flytekit-airflow dependencies, does not support python 3.12: https://github.com/apache/beam/issues/29149
- python-version: 3.12
plugin-names: "flytekit-airflow"
# Tensorflow is a dependency of flytekit-mlflow tests and that is not supported yet: https://github.com/tensorflow/tensorflow/issues/62003
- python-version: 3.12
plugin-names: "flytekit-mlflow"
# modin[ray] is a dependency needed to run the tests, unfortunately this is not supported in python 3.12 yet
- python-version: 3.12
plugin-names: "flytekit-modin"
# vaex currently doesn't support python 3.12
- python-version: 3.12
plugin-names: "flytekit-vaex"
# Ray does not support python 3.12 yet: https://github.com/ray-project/ray/issues/40211
- python-version: 3.12
plugin-names: "flytekit-ray"
# Segmentation fault on python 3.12: https://github.com/flyteorg/flyte/issues/5020
- python-version: 3.12
plugin-names: "flytekit-kf-pytorch"
steps:
- uses: actions/checkout@v4
- name: "Clear action cache"
uses: ./.github/actions/clear-action-cache
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
# This path is specific to Ubuntu
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.txt', format('plugins/{0}/requirements.txt', matrix.plugin-names ))) }}
- name: Install dependencies
run: |
pip install uv
# TODO: double-check if checking out all tags solves the issue
export SETUPTOOLS_SCM_PRETEND_VERSION="3.0.0"
make setup-global-uv
cd plugins/${{ matrix.plugin-names }}
uv pip install --system .
if [ -f dev-requirements.in ]; then uv pip install --system -r dev-requirements.in; fi
# TODO: move to protobuf>=5. Github issue: https://github.com/flyteorg/flyte/issues/5448
uv pip install --system -U $GITHUB_WORKSPACE "protobuf<5" "git+https://github.com/flyteorg/flyte.git@master#subdirectory=flyteidl"
# TODO: remove this when numpy v2 in onnx has been resolved
if [[ ${{ matrix.plugin-names }} == *"onnx"* || ${{ matrix.plugin-names }} == "flytekit-sqlalchemy" || ${{ matrix.plugin-names }} == "flytekit-pandera" ]]; then
uv pip install --system "numpy<2.0.0"
fi
uv pip freeze
- name: Test with coverage
run: |
cd plugins/${{ matrix.plugin-names }}
# onnx plugins does not support protobuf>4 yet (in fact it is tensorflow that
# does not support that yet). More details in https://github.com/onnx/onnx/issues/4239.
if [[ ${{ matrix.plugin-names }} == *"onnx"* || ${{ matrix.plugin-names }} == "flytekit-whylogs" || ${{ matrix.plugin-names }} == "flytekit-mlflow" ]]; then
PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python coverage run -m pytest tests --cov=./ --cov-report=xml --cov-append
else
coverage run -m pytest tests --cov=./ --cov-report=xml --cov-append
fi
- name: Codecov
uses: codecov/[email protected]
with:
fail_ci_if_error: false
lint:
runs-on: ubuntu-latest
steps:
- name: Fetch the code
uses: actions/checkout@v4
- name: Set up Python 3.12
uses: actions/setup-python@v4
with:
python-version: 3.12
- uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/dev-requirements.in') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install uv
make setup-global-uv
uv pip freeze
- name: Lint
run: |
make lint