From 343c86ca130a7e1f34b9e34f53265fe0991f5905 Mon Sep 17 00:00:00 2001 From: Dingel321 Date: Mon, 29 Jan 2024 17:46:45 +0100 Subject: [PATCH] updateing Readme file --- README.rst | 26 +++++++------------------- 1 file changed, 7 insertions(+), 19 deletions(-) diff --git a/README.rst b/README.rst index 048d9d0..6f38c45 100644 --- a/README.rst +++ b/README.rst @@ -23,35 +23,23 @@ Dependencies 3. NumPy 4. PyTorch 5. json +6. mrcfile Installing ---------- Download this repository ~~~~~~~~~~~~~~~~~~~~~~~~ +.. code:: bash -`https://github.com/DSilva27/cryo_em_SBI.git` + git clone `https://github.com/DSilva27/cryo_em_SBI.git` -Install the module +Navigate to the cloned repository and install the module ~~~~~~~~~~~~~~~~~~ .. code:: bash + + cd cryo_em_SBI - python3 -m pip install . - -Using the code --------------- - -Train posterior from command line -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. code:: bash - train_npe_model \ - --image_config_file image_config.json \ - --train_config_file train_config.json\ - --epochs 450 \ - --estimator_file ../posterior/test.estimator \ - --loss_file ../posterior/test.loss \ - --n_workers 4 \ - --train_device cuda \ - --saving_freq 20 \ - --simulation_batch_size 2048 + pip install . \ No newline at end of file