From 31f68830ff2a9f41ef556bb27647c44237b2d60c Mon Sep 17 00:00:00 2001 From: Geoffrey Woollard Date: Wed, 17 Jul 2024 14:22:08 -0400 Subject: [PATCH] refer to dataset_2_ground_truth in config files --- config_files/config_distribution_to_distribution.yaml | 2 +- config_files/config_map_to_map_distance_matrix.yaml | 8 ++++---- config_files/config_plotting.yaml | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/config_files/config_distribution_to_distribution.yaml b/config_files/config_distribution_to_distribution.yaml index d8b2416..da8b3d9 100644 --- a/config_files/config_distribution_to_distribution.yaml +++ b/config_files/config_distribution_to_distribution.yaml @@ -4,7 +4,7 @@ metrics: - corr - bioem - fsc -gt_metadata_fname: data/metadata.csv +gt_metadata_fname: data/dataset_2_ground_truth/metadata.csv n_replicates: 30 n_pool_microstate: 5 replicate_fraction: 0.9 diff --git a/config_files/config_map_to_map_distance_matrix.yaml b/config_files/config_map_to_map_distance_matrix.yaml index be8d55d..4302227 100644 --- a/config_files/config_map_to_map_distance_matrix.yaml +++ b/config_files/config_map_to_map_distance_matrix.yaml @@ -2,16 +2,16 @@ data: n_pix: 224 psize: 2.146 submission: - fname: data/submission_0.pt + fname: data/dataset_2_ground_truth/submission_0.pt volume_key: volumes metadata_key: populations label_key: id ground_truth: - volumes: data/maps_gt_flat.pt - metadata: data/metadata.csv + volumes: data/dataset_2_ground_truth/maps_gt_flat.pt + metadata: data/dataset_2_ground_truth/metadata.csv mask: do: true - volume: data/mask_dilated_wide_224x224.mrc + volume: data/dataset_2_ground_truth/mask_dilated_wide_224x224.mrc analysis: metrics: - l2 diff --git a/config_files/config_plotting.yaml b/config_files/config_plotting.yaml index 9dd30f4..65b3e92 100644 --- a/config_files/config_plotting.yaml +++ b/config_files/config_plotting.yaml @@ -1,4 +1,4 @@ -gt_metadata: path/to/metadata.csv +gt_metadata: data/dataset_2_ground_truth/metadata.csv map2map_results: - path/to/map2map_results_1.pkl