diff --git a/config_files/config_distribution_to_distribution.yaml b/config_files/config_distribution_to_distribution.yaml
index d8b2416..da8b3d9 100644
--- a/config_files/config_distribution_to_distribution.yaml
+++ b/config_files/config_distribution_to_distribution.yaml
@@ -4,7 +4,7 @@ metrics:
   - corr
   - bioem
   - fsc
-gt_metadata_fname: data/metadata.csv
+gt_metadata_fname: data/dataset_2_ground_truth/metadata.csv
 n_replicates: 30
 n_pool_microstate: 5
 replicate_fraction: 0.9
diff --git a/config_files/config_map_to_map_distance_matrix.yaml b/config_files/config_map_to_map_distance_matrix.yaml
index be8d55d..4302227 100644
--- a/config_files/config_map_to_map_distance_matrix.yaml
+++ b/config_files/config_map_to_map_distance_matrix.yaml
@@ -2,16 +2,16 @@ data:
   n_pix: 224
   psize: 2.146 
   submission:
-    fname: data/submission_0.pt
+    fname: data/dataset_2_ground_truth/submission_0.pt
     volume_key: volumes
     metadata_key: populations
     label_key: id
   ground_truth:
-    volumes: data/maps_gt_flat.pt 
-    metadata: data/metadata.csv 
+    volumes: data/dataset_2_ground_truth/maps_gt_flat.pt 
+    metadata: data/dataset_2_ground_truth/metadata.csv 
   mask: 
     do: true
-    volume: data/mask_dilated_wide_224x224.mrc
+    volume: data/dataset_2_ground_truth/mask_dilated_wide_224x224.mrc
 analysis:
   metrics:
     - l2
diff --git a/config_files/config_plotting.yaml b/config_files/config_plotting.yaml
index 9dd30f4..65b3e92 100644
--- a/config_files/config_plotting.yaml
+++ b/config_files/config_plotting.yaml
@@ -1,4 +1,4 @@
-gt_metadata: path/to/metadata.csv
+gt_metadata: data/dataset_2_ground_truth/metadata.csv
 
 map2map_results:
   - path/to/map2map_results_1.pkl