testing.yml

# GHA workflow for running tests. 
#
# Largely taken from 
# https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
# Please check the link for more detailed instructions

name: Run tests

on: [push]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Cache pip wheels
        uses: actions/cache@v3
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install .
          pip install pytest
      - name: Get test data from OSF
        run: |
          mkdir -p data/dataset_2_submissions tests/data/
          wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/dataset_2_submissions/submission_0.pt?download=true -O data/dataset_2_submissions/submission_0.pt
          wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/Ground_truth/gt_maps_flat_10.pt?download=true -O tests/data/gt_maps_flat_10.pt
          wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/Ground_truth/metadata_10.csv?download=true -O tests/data/metadata_10.csv 
          wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/Ground_truth/mask_dilated_wide_224x224.mrc?download=true -O data/mask_dilated_wide_224x224.mrc 
      - name: Test with pytest
        run: |
          pytest tests/