config.yaml

experiment_settings:
  experiment_name: 2023_E6_exp
  description: Cisplatin treated ovarian cancer cells. ch0 - DHB, ch1 - 53BP1

signal_channels:
  - name: ch0
    path: D:\test_data\E6_C0_level_1.zarr
    lut: green
  - name: ch1
    path: D:\test_data\E6_C1_level_1.zarr
    lut: red

cell_measurements:
  - function: area
    source: regionprops
  - function: intensity_mean
    name: nuc
    source: regionprops
    channels: 
      - ch0
      - ch1
  - function: ring_intensity
    name: cyto
    source: track_gardener
    channels: 
      - ch0
      - ch1
    ring_width: 5

database:
  path: D:\test_data\Exp6_gardener_v6.db

graphs:
  - name: DHB
    signals: 
      - ch0_nuc
      - ch0_cyto
    colors:
      - yellow
      - green
  - name: ar
    signals: 
      - area
    colors:
      - yellow


cell_tags:
  modified: x
  apoptosis: A
  mitosis: M
  disappear: D
  test: T