From ea76614346b47fe8aa0d34bc7e9f2eb0b9ca37c0 Mon Sep 17 00:00:00 2001 From: Robert Oostenveld Date: Tue, 24 Sep 2024 22:29:53 +0200 Subject: [PATCH] updated tags --- _data/tag/coherence.yml | 3 - _data/tag/eeg.yml | 3 - _data/tag/example.yml | 261 ------------------- _data/tag/faq.yml | 558 ---------------------------------------- _data/tag/fixme.yml | 3 + _data/tag/freq.yml | 3 - _data/tag/headmodel.yml | 2 +- _data/tag/matlab.yml | 3 + _data/tag/meg.yml | 5 +- _data/tag/source.yml | 2 +- _data/tag/tutorial.yml | 141 ---------- _data/tag/units.yml | 3 + tag/units.md | 4 + 13 files changed, 16 insertions(+), 975 deletions(-) create mode 100644 _data/tag/units.yml create mode 100644 tag/units.md diff --git a/_data/tag/coherence.yml b/_data/tag/coherence.yml index 7be3a001d..2f650e0fb 100644 --- a/_data/tag/coherence.yml +++ b/_data/tag/coherence.yml @@ -31,9 +31,6 @@ - name: Extended analysis of sensor- and source-level connectivity link: /tutorial/connectivityextended -- name: Fourier analysis of neuronal oscillations and synchronization - link: /tutorial/fourier - - name: Simulating and estimating, what about model (mis)match? link: /workshop/chieti2015/simulation diff --git a/_data/tag/eeg.yml b/_data/tag/eeg.yml index ba151667c..8f4260d3a 100644 --- a/_data/tag/eeg.yml +++ b/_data/tag/eeg.yml @@ -151,9 +151,6 @@ - name: Parametric and non-parametric statistics on event-related fields link: /tutorial/eventrelatedstatistics -- name: Fourier analysis of neuronal oscillations and synchronization - link: /tutorial/fourier - - name: Creating a BEM volume conduction model of the head for source reconstruction of EEG data link: /tutorial/headmodel_eeg_bem diff --git a/_data/tag/example.yml b/_data/tag/example.yml index 06fb666b8..cd22d3004 100644 --- a/_data/tag/example.yml +++ b/_data/tag/example.yml @@ -1,264 +1,3 @@ - name: Example MATLAB scripts link: /example -- name: Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA - link: /example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa - -- name: BIDS - the brain imaging data structure - link: /example/bids - -- name: Converting an example audio dataset for sharing in BIDS - link: /example/bids_audio - -- name: Converting an example behavioral dataset for sharing in BIDS - link: /example/bids_behavioral - -- name: Converting an example EEG dataset for sharing in BIDS - link: /example/bids_eeg - -- name: Converting an example EMG dataset for sharing in BIDS - link: /example/bids_emg - -- name: Converting an example eyetracker dataset for sharing in BIDS - link: /example/bids_eyetracker - -- name: Converting an example MEG dataset for sharing in BIDS - link: /example/bids_meg - -- name: Converting an example motion tracking dataset for sharing in BIDS - link: /example/bids_motion - -- name: Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS - link: /example/bids_mous - -- name: Converting an example NIRS dataset for sharing in BIDS - link: /example/bids_nirs - -- name: Combining simultaneous recordings in BIDS - link: /example/bids_pom - -- name: Converting an example video dataset for sharing in BIDS - link: /example/bids_video - -- name: Example analysis pipeline for Biosemi data - link: /example/biosemi - -- name: How to use ft_checkconfig - link: /example/checkconfig - -- name: Effect of SNR on Coherence - link: /example/coherence_snr - -- name: Combined EEG and MEG source reconstruction - link: /example/combined_eeg_and_meg_source_reconstruction - -- name: The correct pipeline order for combining planar MEG channels - link: /example/combineplanar_pipelineorder - -- name: Common filters in beamforming - link: /example/common_filters_in_beamforming - -- name: Compute forward simulated data using ft_dipolesimulation - link: /example/compute_forward_simulated_data - -- name: Compute forward simulated data and apply a beamformer scan - link: /example/compute_forward_simulated_data_and_apply_a_beamformer_scan - -- name: Compute forward simulated data and apply a dipole fit - link: /example/compute_forward_simulated_data_and_apply_a_dipole_fit - -- name: Compute forward simulated data with the low-level ft_compute_leadfield - link: /example/compute_leadfield - -- name: Conditional Granger causality in the frequency domain - link: /example/connectivity_conditional_granger - -- name: Check the quality of the anatomical coregistration - link: /example/coregistration_quality_control - -- name: Correlation analysis of fMRI data - link: /example/correlation_analysis_in_fmri_data - -- name: Cross-frequency analysis - link: /example/crossfreq - -- name: Detect the muscle activity in an EMG channel and use that as trial definition - link: /example/detect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition - -- name: Determine the filter characteristics - link: /example/determine_the_filter_characteristics - -- name: Localizing the sources underlying the difference in event-related fields - link: /example/difference_erf - -- name: Fit a dipole to the tactile ERF after mechanical stimulation - link: /example/dipolefit_somatosensory_erf - -- name: Analysis of high-gamma band signals in human ECoG - link: /example/ecog_ny - -- name: Effects of tapering for power estimates - link: /example/effects_of_tapering - -- name: Computing and reporting the effect size - link: /example/effectsize - -- name: Align EEG electrode positions to BEM headmodel - link: /example/electrodes2bem - -- name: Perform modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data - link: /example/entropy_analysis - -- name: Compute EEG leadfields using a FEM headmodel - link: /example/fem - -- name: How to create a head model if you do not have an individual MRI - link: /example/fittemplate - -- name: Fixing a missing channel - link: /example/fixing_a_missing_sensor - -- name: Fitting oscillations and one-over-F (FOOOF) - link: /example/fooof - -- name: Example real-time average - link: /example/ft_realtime_average - -- name: Example real-time classification - link: /example/ft_realtime_classification - -- name: Realtime neurofeedback application based on Hilbert phase estimation - link: /example/ft_realtime_hilbert - -- name: Example real-time power estimate - link: /example/ft_realtime_powerestimate - -- name: Example real-time selective average - link: /example/ft_realtime_selectiveaverage - -- name: Example real-time signal viewer - link: /example/ft_realtime_signalviewer - -- name: Getting started with reading raw EEG or MEG data - link: /example/getting_started_with_reading_raw_eeg_or_meg_data - -- name: Using General Linear Modeling on time series data - link: /example/glm_timeseries - -- name: Using General Linear Modeling over trials - link: /example/glm_trials - -- name: How to incorporate head movements in MEG analysis - link: /example/headmovement_meg - -- name: Independent component analysis (ICA) to remove ECG artifacts - link: /example/ica_ecg - -- name: Independent component analysis (ICA) to remove EOG artifacts - link: /example/ica_eog - -- name: How to import data from MNE-Python and FreeSurfer - link: /example/import_mne - -- name: Irregular Resampling Auto-Spectral Analysis (IRASA) - link: /example/irasa - -- name: Make leadfields using different headmodels - link: /example/make_leadfields_using_different_headmodels - -- name: Measuring the timing delay and jitter for a real-time application - link: /example/measuring_the_timing_delay_and_jitter_for_a_real-time_application - -- name: Combine MEG with Eyelink eyetracker data - link: /example/meg_eyelink - -- name: Interpolating data from the CTF151 to the CTF275 sensor array using megrealign - link: /example/megrealign - -- name: Defining electrodes as neighbours for cluster-level statistics - link: /example/neighbours - -- name: Analyzing NIRS data recorded during unilateral finger- and foot-tapping - link: /example/nirs_fingertapping - -- name: Using GLM to analyze NIRS timeseries data - link: /example/nirs_glm - -- name: Creating a layout for plotting NIRS optodes and channels - link: /example/nirs_layout - -- name: Analyzing NIRS data recorded during listening to and repeating speech - link: /example/nirs_speech - -- name: Simulate an oscillatory signal with phase resetting - link: /example/phase_reset - -- name: Find the orientation of planar gradiometers - link: /example/planar_orientation - -- name: Plotting the result of source reconstruction on a cortical mesh - link: /example/plotting_source_surface - -- name: Making your analysis pipeline reproducible using reproducescript - link: /example/reproducescript - -- name: Using reproducescript on a full study - link: /example/reproducescript_andersen - -- name: Using reproducescript for a group analysis - link: /example/reproducescript_group - -- name: Re-reference EEG and iEEG data - link: /example/rereference - -- name: Using simulations to estimate the sample size for cluster-based permutation test - link: /example/samplesize - -- name: Source statistics - link: /example/source_statistics - -- name: Create MNI-aligned grids in individual head-space - link: /example/sourcemodel_aligned2mni - -- name: Fitting a template MRI to the MEG Polhemus head shape - link: /example/sphere_fitting - -- name: Analyze Steady-State Visual Evoked Potentials (SSVEPs) - link: /example/ssvep - -- name: Stratify the distribution of one variable that differs in two conditions - link: /example/stratify - -- name: Symmetric dipole pairs for beamforming - link: /example/symmetry - -- name: Testing BEM created EEG lead fields - link: /example/testing_bem_created_leadfields - -- name: Using threshold-free cluster enhancement for cluster statistics - link: /example/threshold_free_cluster_enhancement - -- name: Making your own trialfun for conditional trial definition - link: /example/trialfun - -- name: Use denoising source separation (DSS) to remove ECG artifacts - link: /example/use_denoising_source_separation_dss_to_remove_ecg_artifacts - -- name: Use simulated ERPs to explore cluster statistics - link: /example/use_simulated_erps_to_explore_cluster_statistics - -- name: Use your own forward leadfield model in an inverse beamformer computation - link: /example/use_your_own_forward_leadfield_model_in_an_inverse_beamformer_computation - -- name: Making a synchronous movie of EEG or NIRS combined with video recordings - link: /example/video_eeg - -- name: Can I create an artificial CTF dataset using MATLAB? - link: /example/writing_simulated_data_to_a_ctf_dataset - -- name: Getting started with real-time analysis for BCI/neurofeedback - link: /getting_started/realtime - -- name: Fourier analysis of neuronal oscillations and synchronization - link: /tutorial/fourier - diff --git a/_data/tag/faq.yml b/_data/tag/faq.yml index 19a9aefdc..e858886ba 100644 --- a/_data/tag/faq.yml +++ b/_data/tag/faq.yml @@ -1,561 +1,3 @@ - name: Frequently Asked Questions link: /faq -- name: What is the difference between the ACPC, MNI, SPM and TAL coordinate systems? - link: /faq/acpc - -- name: Where is the anterior commissure? - link: /faq/anterior_commissure - -- name: How can I append the files of two separate recordings? - link: /faq/append_files - -- name: How can I play back EEG/MEG and synchronous audio or video? - link: /faq/audiovideo - -- name: How should I specify the coordinate systems in a BIDS dataset? - link: /faq/bids_coordsystem - -- name: Can I do combined EEG and MEG source reconstruction? - link: /faq/can_i_do_combined_eeg_and_meg_source_reconstruction - -- name: Can I get an offline version of the documentation on the website? - link: /faq/can_i_get_an_offline_version_of_the_wiki_documentation - -- name: Can I organize my own FieldTrip workshop? - link: /faq/can_i_organize_my_own_workshop - -- name: Can I prevent "external" toolboxes from being added to my MATLAB path? - link: /faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path - -- name: Can I restrict the source reconstruction to the grey matter? - link: /faq/can_i_restrict_the_source_reconstruction_to_the_grey_matter - -- name: Can I use Octave instead of MATLAB? - link: /faq/can_i_use_octave_instead_of_matlab - -- name: Can I use the FieldTrip logo on my poster? - link: /faq/can_i_use_the_fieldtrip_logo_on_my_poster - -- name: Can I compare EEG channels between different electrode caps? - link: /faq/capmapping - -- name: Which methodological details should I report in an EEG/MEG manuscript? - link: /faq/checklist - -- name: What does the coilaccuracy parameter do? - link: /faq/coilaccuracy - -- name: Which colormaps are supported? - link: /faq/colormap - -- name: How can I compile the mex files and command-line executable? - link: /faq/compile - -- name: Can I use FieldTrip without MATLAB license? - link: /faq/compiled - -- name: Why should I set continuous to yes for CTF data? - link: /faq/continuous - -- name: How are the different head and MRI coordinate systems defined? - link: /faq/coordsys - -- name: How can I share my MEG data? - link: /faq/data_sharing - -- name: What dataformats are supported? - link: /faq/dataformat - -- name: Which datasets are used in the documentation and where are they used? - link: /faq/datasets - -- name: How can I deal with a discontinuous Neuralynx LFP recording? - link: /faq/discontinuous_neuralynx - -- name: Does the FieldTrip realtime buffer only work with MATLAB? - link: /faq/does_the_fieldtrip_realtime_buffer_only_work_with_matlab - -- name: Does it make sense to subtract the ERP prior to time frequency analysis, to distinguish evoked from induced power? - link: /faq/evoked_vs_induced - -- name: Which external toolboxes are used by FieldTrip? - link: /faq/external - -- name: How should I specify the fiducials for electrode realignment? - link: /faq/fiducial - -- name: What material is used for the flexible MEG headcasts? - link: /faq/headcast - -- name: How do homogenous coordinate transformation matrices work? - link: /faq/homogenous - -- name: How are electrodes, magnetometers or gradiometers described? - link: /faq/how_are_electrodes_magnetometers_or_gradiometers_described - -- name: How are the Left and Right Pre-Auricular (LPA and RPA) points defined? - link: /faq/how_are_the_lpa_and_rpa_points_defined - -- name: How are the various MATLAB data structures defined? - link: /faq/how_are_the_various_data_structures_defined - -- name: How can I anonymize or deidentify a BrainVision dataset? - link: /faq/how_can_i_anonymize_a_brainvision_dataset - -- name: How can I anonymize or deidentify a CTF dataset? - link: /faq/how_can_i_anonymize_a_ctf_dataset - -- name: How can I anonymize or deidentify an anatomical MRI? - link: /faq/how_can_i_anonymize_an_anatomical_mri - -- name: How can I anonymize or deidentify DICOM files? - link: /faq/how_can_i_anonymize_dicom_files - -- name: How can I anonymize data processed in FieldTrip? - link: /faq/how_can_i_anonymize_fieldtrip_data - -- name: How can I change the head localization in a CTF dataset? - link: /faq/how_can_i_change_the_head_localization_in_a_ctf_dataset - -- name: How can I check whether the grid that I have is aligned to the segmented volume and to the sensor gradiometer? - link: /faq/how_can_i_check_whether_the_grid_that_i_have_is_aligned_to_the_segmented_volume_and_to_the_sensor_gradiometer - -- name: How can I compile the mex files on 64-bit Windows? - link: /faq/how_can_i_compile_the_mex_files_on_64_bit_windows - -- name: How can I compile the mex files on macOS? - link: /faq/how_can_i_compile_the_mex_files_on_os_x - -- name: How can I consistently represent artifacts in my data? - link: /faq/how_can_i_consistently_represent_artifacts_in_my_data - -- name: How can I convert an anatomical MRI from DICOM into CTF format? - link: /faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format - -- name: How can I convert one dataformat into an other? - link: /faq/how_can_i_convert_one_dataformat_into_an_other - -- name: How can I debug my analysis script if a FieldTrip function gives an error? - link: /faq/how_can_i_debug_my_analysis_script_if_a_fieldtrip_function_gives_an_error - -- name: How can I define neighbouring sensors? - link: /faq/how_can_i_define_neighbouring_sensors - -- name: How can I determine the anatomical label of a source or electrode? - link: /faq/how_can_i_determine_the_anatomical_label_of_a_source - -- name: How can I determine the onset of an effect? - link: /faq/how_can_i_determine_the_onset_of_an_effect - -- name: How can I distribute a batch of jobs? - link: /faq/how_can_i_distribute_a_batch_of_jobs - -- name: How can I do time-frequency analysis on continuous data? - link: /faq/how_can_i_do_time-frequency_analysis_on_continuous_data - -- name: Which version of FieldTrip should I download? - link: /faq/how_can_i_download_a_specific_version - -- name: How can I extend the reading functions with a new dataformat? - link: /faq/how_can_i_extend_the_reading_functions_with_a_new_dataformat - -- name: How can I find out what eventvalues and eventtypes there are in my data? - link: /faq/how_can_i_find_out_what_eventvalues_and_eventtypes_there_are_in_my_data - -- name: How can I fine-tune my BEM volume conduction model? - link: /faq/how_can_i_fine-tune_my_bem_volume_conduction_model - -- name: How can I fix a corrupt CTF meg4 file? - link: /faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file - -- name: How can I fix a corrupt CTF res4 header file? - link: /faq/how_can_i_fix_a_corrupt_ctf_res4_header_file - -- name: How can I import my own data format? - link: /faq/how_can_i_import_my_own_dataformat - -- name: How can I inspect the electrode impedances of my data? - link: /faq/how_can_i_inspect_the_electrode_impedances_of_my_data - -- name: How can I interpret the different types of padding in FieldTrip? - link: /faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts - -- name: How can I keep track of changes to the code? - link: /faq/how_can_i_keep_track_of_the_changes_to_the_code - -- name: How can I map source locations onto an anatomical label in an atlas? - link: /faq/how_can_i_map_source_locations_between_two_different_representations - -- name: How can I merge two datasets that were acquired simultaneously with different amplifiers? - link: /faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers - -- name: How can I monitor a subject's head position during a MEG session? - link: /faq/how_can_i_monitor_a_subject_s_head_position_during_a_meg_session - -- name: How can I preprocess a dataset that is too large to fit into memory? - link: /faq/how_can_i_preprocess_a_dataset_that_is_too_large_to_fit_into_memory - -- name: How can I process continuous data without triggers? - link: /faq/how_can_i_process_continuous_data_without_triggers - -- name: How can I read all channels from an EDF file that contains multiple sampling rates? - link: /faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates - -- name: How can I read corrupted (unsaved) CTF data? - link: /faq/how_can_i_read_corrupted_unsaved_ctf_data - -- name: How can I read EGI mff data without the JVM? - link: /faq/how_can_i_read_egi_mff_data_without_the_jvm - -- name: How to test an interaction effect using cluster-based permutation tests? - link: /faq/how_can_i_test_an_interaction_effect_using_cluster-based_permutation_tests - -- name: How can I test for correlations between neuronal data and quantitative stimulus and behavioral variables? - link: /faq/how_can_i_test_for_correlations_between_neuronal_data_and_quantitative_stimulus_and_behavioural_variables - -- name: What kind of cable do I need for a serial port connection between two computers? - link: /faq/how_can_i_test_the_serial_port_connection_between_two_computers - -- name: How can I test whether a behavioral measure is phasic? - link: /faq/how_can_i_test_whether_a_behavioral_measure_is_phasic - -- name: How can I transform trigger values from bits to decimal representation with a trialfun? - link: /faq/how_can_i_transform_trigger_values_from_bits_to_decimal_representation_with_a_trialfun - -- name: How can I use my MacBook Pro for stimulus presentation in the MEG lab? - link: /faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab - -- name: How can I use the databrowser? - link: /faq/how_can_i_use_the_databrowser - -- name: How can I use the ivar, uvar, wvar and cvar options to precisely control the permutations? - link: /faq/how_can_i_use_the_ivar_uvar_wvar_and_cvar_options_to_precisely_control_the_permutations - -- name: How can I visualize a localspheres volume conductor model? - link: /faq/how_can_i_visualize_a_localspheres_volume_conductor_model - -- name: How can I visualize the different geometrical objects that are needed for forward and inverse computations? - link: /faq/how_can_i_visualize_the_different_geometrical_objects_that_are_needed_for_forward_and_inverse_computations - -- name: How can I visualize the neuromag head position indicator coils? - link: /faq/how_can_i_visualize_the_neuromag_head_position_indicator_coils - -- name: How to change the MRI orientation, the voxel size or the field-of-view? - link: /faq/how_change_mri_orientation_size_fov - -- name: How do I construct a layout file for the plotting functions? - link: /faq/how_do_i_construct_a_layout_file_for_the_plotting_functions - -- name: How do I install the OpenMEEG binaries - link: /faq/how_do_i_install_the_openmeeg_binaries - -- name: How do I prevent FieldTrip from printing the time and memory after each function call? - link: /faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call - -- name: How does a difference in trial numbers per condition affect my statistical test - link: /faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test - -- name: How does ft_prepare_neighbours work? - link: /faq/how_does_ft_prepare_neighbours_work - -- name: How does the CTF higher-order gradiometer work? - link: /faq/how_does_the_ctf_higher-order_gradiometer_work - -- name: How does the filter padding in preprocessing work? - link: /faq/how_does_the_filter_padding_in_preprocessing_work - -- name: How fast is the FieldTrip buffer for realtime data streaming? - link: /faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming - -- name: How is anatomical, functional or statistical "volume data" described? - link: /faq/how_is_anatomical_functional_or_statistical_volume_data_described - -- name: How is the segmentation defined? - link: /faq/how_is_the_segmentation_defined - -- name: How many lines of code does FieldTrip consist of? - link: /faq/how_many_lines_of_code_does_fieldtrip_consist_of - -- name: How many people are subscribed to the email discussion list? - link: /faq/how_many_people_are_subscribed_to_the_email_discussion_list - -- name: How NOT to interpret results from a cluster-based permutation test - link: /faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test - -- name: How should I get started with the FieldTrip realtime buffer? - link: /faq/how_should_i_get_started_with_the_fieldtrip_realtime_buffer - -- name: How should I prepare for the upcoming FieldTrip workshop? - link: /faq/how_should_i_prepare_for_the_upcoming_fieldtrip_workshop - -- name: How should I refer to FieldTrip in my publication? - link: /faq/how_should_i_refer_to_fieldtrip_in_my_publication - -- name: How should I report the positions of the fiducial points on the head? - link: /faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head - -- name: How should I share example data with the email list or developers? - link: /faq/how_should_i_send_example_data_to_the_developers - -- name: How to ask good questions to the community? - link: /faq/how_to_ask_good_questions_to_the_community - -- name: How to compile MATLAB code into stand-alone executables? - link: /faq/how_to_compile_matlab_code_into_stand-alone_executables - -- name: How to coregister an anatomical MRI with the gradiometer or electrode positions? - link: /faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions - -- name: How to get started with distributed computing using qsub? - link: /faq/how_to_get_started_with_distributed_computing_using_qsub - -- name: How to get started with the MATLAB distributed computing toolbox? - link: /faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox - -- name: How to interpret the sign of the phase slope index? - link: /faq/how_to_interpret_the_sign_of_the_phase_slope_index - -- name: How to select the correct SPM toolbox? - link: /faq/how_to_select_the_correct_spm_toolbox - -- name: I am getting strange artifacts in figures that use opacity - link: /faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity - -- name: I am having problems downloading - link: /faq/i_am_having_problems_downloading - -- name: I am having problems printing figures that use opacity - link: /faq/i_am_having_problems_printing_figures_that_use_opacity - -- name: I am having problems reading the CTF .hc headcoordinates file - link: /faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file - -- name: I am working at the Donders, should I also download FieldTrip? - link: /faq/i_am_working_at_the_donders_should_i_also_download_fieldtrip - -- name: I have problems reading in neuroscan .cnt files. How can I fix this? - link: /faq/i_have_problems_reading_in_neuroscan_.cnt_files._how_can_i_fix_this - -- name: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that? - link: /faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that - -- name: I used to work with trl-matrices that have more than 3 columns. Why is this not supported anymore? - link: /faq/i_used_to_work_with_trl-matrices_that_have_more_than_3_columns._why_is_this_not_supported_anymore - -- name: In what way can frequency domain data be represented in FieldTrip? - link: /faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip - -- name: Installation and setting up the path - link: /faq/installation - -- name: Is it good or bad to have dipole locations outside of the brain for which the source reconstruction is computed? - link: /faq/is_it_good_or_bad_to_have_dipole_locations_outside_of_the_brain_for_which_the_source_reconstruction_is_computed - -- name: Is it important to have accurate measurements of electrode locations for EEG source reconstruction? - link: /faq/is_it_important_to_have_accurate_measurements_of_electrode_locations_for_eeg_source_reconstruction - -- name: Is it possible to keep track of trial-specific information in my analysis pipeline? - link: /faq/is_it_possible_to_keep_track_of_trial-specific_information_in_my_fieldtrip_analysis_pipeline - -- name: How can I compute inter-trial coherence? - link: /faq/itc - -- name: MATLAB complains about a missing or invalid mex file, what should I do? - link: /faq/matlab_complains_about_a_missing_or_invalid_mex_file_what_should_i_do - -- name: MATLAB does not see the functions in the "private" directory - link: /faq/matlab_does_not_see_the_functions_in_the_private_directory - -- name: Replacements for functions from MathWorks toolboxes - link: /faq/matlab_replacements - -- name: What are the MATLAB requirements for using FieldTrip? - link: /faq/matlab_requirements - -- name: MATLAB version 7.3 (2006b) crashes when I try to do ... - link: /faq/matlab_version_7.3_2006b_crashes_when_i_try_to_do - -- name: MATLAB complains that mexmaci64 cannot be opened because the developer cannot be verified - link: /faq/mexmaci64_cannot_be_opened_because_the_developer_cannot_be_verified - -- name: How does MTMCONVOL work? - link: /faq/mtmconvol - -- name: My MRI is upside down, is this a problem? - link: /faq/my_mri_is_upside_down_is_this_a_problem - -- name: Where can I find open access MEG/EEG data? - link: /faq/open_data - -- name: Reading is slow, can I write my raw data to a more efficient file format? - link: /faq/reading_is_slow_can_i_write_my_raw_data_to_a_more_efficient_file_format - -- name: How can I rename channels in my data structure? - link: /faq/rename_channels - -- name: What are the MATLAB and external requirements? - link: /faq/requirements - -- name: Do I need to resample my data, and if so, how is this to be done? - link: /faq/resampling_lowpassfilter - -- name: Should I rereference prior to or after ICA for artifact removal? - link: /faq/should_I_rereference_prior_to_or_after_ica_for_artifact_removal - -- name: Should I use t or F values for cluster-based permutation tests? - link: /faq/should_I_use_t_or_F_values_for_cluster-based_permutation_tests - -- name: Is it OK for vertices/dipoles to stick out of the volume conductor? - link: /faq/sticking_out - -- name: Should I use a Polhemus or a Structure Sensor to record electrode positions? - link: /faq/structuresensor - -- name: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this? - link: /faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this - -- name: What is meant by time-frequency trade off? - link: /faq/timefreqtradeoff - -- name: How can I check or decipher the sequence of triggers in my data? - link: /faq/triggers - -- name: What are the units of the data and of the derived results? - link: /faq/units - -- name: Are the FieldTrip lectures available on video? - link: /faq/video - -- name: What are the differences between the old and the new implementation of 'mtmconvol' in ft_freqanalyis? - link: /faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis - -- name: What are the differences between the old and the new implementation of 'mtmftt' in ft_freqanalyis? - link: /faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmfft_in_ft_freqanalyis - -- name: What are the differences between the old and the new implementation of 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? - link: /faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_wavelet_formerly_wltconvol_in_ft_freqanalyis - -- name: What are the different approaches I can take for distributed computing? - link: /faq/what_are_the_different_approaches_i_can_take_for_distributed_computing - -- name: What are the different Neuromag/Elekta/Megin and Yokogawa layouts good for? - link: /faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for - -- name: What convention is used to define absolute phase in 'mtmconvol', 'wavelet' and 'mtmfft'? - link: /faq/what_convention_is_used_to_define_absolute_phase_in_mtmconvol_wavelet_and_mtmfft - -- name: What does a typical call to a FieldTrip function look like? - link: /faq/what_does_a_typical_call_to_a_fieldtrip_function_look_like - -- name: What does "padding not sufficient for requested frequency resolution" mean? - link: /faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean - -- name: What is a good way to save images for later processing in other software? - link: /faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software - -- name: What is the conductivity of the brain, CSF, skull and skin tissue? - link: /faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue - -- name: What is the difference between coherence and coherency? - link: /faq/what_is_the_difference_between_coherence_and_coherency - -- name: What is the format of the layout file which is used for plotting? - link: /faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting - -- name: What is the idea behind statistical inference at the second-level? - link: /faq/what_is_the_idea_behind_statistical_inference_at_the_second-level - -- name: What is the plotting convention for anatomical MRIs? - link: /faq/what_is_the_plotting_convention_for_anatomical_mris - -- name: What is the relation between "events" (such as triggers) and "trials"? - link: /faq/what_is_the_relation_between_events_such_as_triggers_and_trials - -- name: What kind of filters can I apply to my data? - link: /faq/what_kind_of_filters_can_i_apply_to_my_data - -- name: What kind of volume conduction models of the head (head models) are implemented? - link: /faq/what_kind_of_volume_conduction_models_are_implemented - -- name: Where can I find the dipoli command-line executable? - link: /faq/where_can_i_find_the_dipoli_command-line_executable - -- name: Which version of FieldTrip should I download? - link: /faq/which_version_of_fieldtrip_should_i_download - -- name: Why am I not allowed to post to the discussion list? - link: /faq/why_am_i_not_allowed_to_post_to_the_discussion_list - -- name: Why am I not getting integer frequencies? - link: /faq/why_am_i_not_getting_exact_integer_frequencies - -- name: Why am I not receiving emails from the discussion list? - link: /faq/why_am_i_not_receiving_emails_from_the_discussion_list - -- name: Why am I receiving warnings about too many bouncing emails? - link: /faq/why_am_i_receiving_warnings_about_too_many_bouncing_emails - -- name: Why are so many of the interesting functions in the private directories? - link: /faq/why_are_so_many_of_the_interesting_functions_in_the_private_directories - -- name: Why are the fileio functions stateless, does the fseek not make them very slow? - link: /faq/why_are_the_fileio_functions_stateless_does_the_fseek_not_make_them_very_slow - -- name: Why are there multiple neighbour templates for the Neuromag306 system? - link: /faq/why_are_there_multiple_neighbour_templates_for_the_neuromag306_system - -- name: Why does my anatomical MRI show upside-down when plotting it with ft_sourceplot? - link: /faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot - -- name: Why does my EEG headmodel look funny? - link: /faq/why_does_my_eegheadmodel_look_funny - -- name: Why does my ICA output contain complex numbers? - link: /faq/why_does_my_ica_output_contain_complex_numbers - -- name: Why does my output.freq not match my cfg.foi when using 'mtmconvol' in ft_freqanalyis? - link: /faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmconvol_in_ft_freqanalyis - -- name: Why does my output.freq not match my cfg.foi when using 'mtmfft' in ft_freqanalyis - link: /faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmfft_in_ft_freqanalyis - -- name: Why does my output.freq not match my cfg.foi when using 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? - link: /faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_wavelet_formerly_wltconvol_in_ft_freqanalyis - -- name: Why does my TFR contain NaNs? - link: /faq/why_does_my_tfr_contain_nans - -- name: Why does my TFR look strange (part I, demeaning)? - link: /faq/why_does_my_tfr_look_strange - -- name: Why does my TFR look strange (part II, detrending)? - link: /faq/why_does_my_tfr_look_strange_part_ii - -- name: Why is FieldTrip developed separately from EEGLAB? - link: /faq/why_is_fieldtrip_developed_separately_from_eeglab - -- name: Why was FieldTrip maintained in SVN and not in Git? - link: /faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git - -- name: Why is my message rejected from the email discussion list? - link: /faq/why_is_my_message_rejected_from_the_email_discussion_list - -- name: Why is the source model deformed or incorrectly aligned after warping template? - link: /faq/why_is_the_source_model_deformed_or_incorrectly_aligned_after_warping_template - -- name: Why is there a residual 50Hz line-noise component after applying a DFT filter? - link: /faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter - -- name: Why is there a rim around the brain for which the source reconstruction is not computed? - link: /faq/why_is_there_a_rim_around_the_brain_for_which_the_source_reconstruction_is_not_computed - -- name: Why is the largest peak in the spectrum at the frequency which is 1/segment length? - link: /faq/why_largest_peak_spectrum - -- name: Why should I use an average reference for EEG source reconstruction? - link: /faq/why_should_i_use_an_average_reference_for_eeg_source_reconstruction - -- name: Why should I use the cfg.correcttail option when using statistics_montecarlo? - link: /faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo - diff --git a/_data/tag/fixme.yml b/_data/tag/fixme.yml index d7b0b2785..6a55c95ee 100644 --- a/_data/tag/fixme.yml +++ b/_data/tag/fixme.yml @@ -13,3 +13,6 @@ - name: Fourier analysis of neuronal oscillations and synchronization link: /tutorial/fourier +- name: Analysis of auditory evoked fields in sensor and source space + link: /tutorial/salzburg + diff --git a/_data/tag/freq.yml b/_data/tag/freq.yml index cb57c25ef..0fec32cf7 100644 --- a/_data/tag/freq.yml +++ b/_data/tag/freq.yml @@ -106,9 +106,6 @@ - name: Parametric and non-parametric statistics on event-related fields link: /tutorial/eventrelatedstatistics -- name: Fourier analysis of neuronal oscillations and synchronization - link: /tutorial/fourier - - name: Introduction to the FieldTrip toolbox link: /tutorial/introduction diff --git a/_data/tag/headmodel.yml b/_data/tag/headmodel.yml index 4ba058382..b59c2c7e0 100644 --- a/_data/tag/headmodel.yml +++ b/_data/tag/headmodel.yml @@ -13,7 +13,7 @@ - name: Compute EEG leadfields using a FEM headmodel link: /example/fem -- name: Make leadfields using different headmodels +- name: Make MEG leadfields using different headmodels link: /example/make_leadfields_using_different_headmodels - name: Create MNI-aligned grids in individual head-space diff --git a/_data/tag/matlab.yml b/_data/tag/matlab.yml index 72513dfe0..9ea4e2ebd 100644 --- a/_data/tag/matlab.yml +++ b/_data/tag/matlab.yml @@ -13,6 +13,9 @@ - name: How can I use my MacBook Pro for stimulus presentation in the MEG lab? link: /faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab +- name: How do I prevent FieldTrip from printing the time and memory after each function call? + link: /faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call + - name: How fast is the FieldTrip buffer for realtime data streaming? link: /faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming diff --git a/_data/tag/meg.yml b/_data/tag/meg.yml index 9db1b244f..d10be1fb3 100644 --- a/_data/tag/meg.yml +++ b/_data/tag/meg.yml @@ -34,7 +34,7 @@ - name: Independent component analysis (ICA) to remove EOG artifacts link: /example/ica_eog -- name: Make leadfields using different headmodels +- name: Make MEG leadfields using different headmodels link: /example/make_leadfields_using_different_headmodels - name: Interpolating data from the CTF151 to the CTF275 sensor array using megrealign @@ -172,9 +172,6 @@ - name: Parametric and non-parametric statistics on event-related fields link: /tutorial/eventrelatedstatistics -- name: Fourier analysis of neuronal oscillations and synchronization - link: /tutorial/fourier - - name: Creating a BEM volume conduction model of the head for source reconstruction of EEG data link: /tutorial/headmodel_eeg_bem diff --git a/_data/tag/source.yml b/_data/tag/source.yml index d554010b4..16a920e8c 100644 --- a/_data/tag/source.yml +++ b/_data/tag/source.yml @@ -34,7 +34,7 @@ - name: How to import data from MNE-Python and FreeSurfer link: /example/import_mne -- name: Make leadfields using different headmodels +- name: Make MEG leadfields using different headmodels link: /example/make_leadfields_using_different_headmodels - name: Plotting the result of source reconstruction on a cortical mesh diff --git a/_data/tag/tutorial.yml b/_data/tag/tutorial.yml index 3c04d97fc..84fd5a4af 100644 --- a/_data/tag/tutorial.yml +++ b/_data/tag/tutorial.yml @@ -4,147 +4,6 @@ - name: Overview of all tutorials link: /tutorial -- name: Introduction on dealing with artifacts - link: /tutorial/artifacts - -- name: Automatic artifact rejection - link: /tutorial/automatic_artifact_rejection - -- name: Localizing oscillatory sources using beamformer techniques - link: /tutorial/beamformer - -- name: Localizing visual gamma and cortico-muscular coherence using DICS - link: /tutorial/beamformingextended - -- name: Cluster-based permutation tests on time-frequency data - link: /tutorial/cluster_permutation_freq - -- name: Cluster-based permutation tests on event-related fields - link: /tutorial/cluster_permutation_timelock - -- name: Analysis of corticomuscular coherence - link: /tutorial/coherence - -- name: Analysis of sensor- and source-level connectivity - link: /tutorial/connectivity - -- name: Extended analysis of sensor- and source-level connectivity - link: /tutorial/connectivityextended - -- name: Preprocessing - Reading continuous EEG and MEG data - link: /tutorial/continuous - -- name: Coregistration of Optically Pumped Magnetometer (OPM) data - link: /tutorial/coregistration_opm - -- name: Speeding up your analysis using distributed computing with parfor - link: /tutorial/distributedcomputing_parfor - -- name: Speeding up your analysis using distributed computing with qsub - link: /tutorial/distributedcomputing_qsub - -- name: Localizing electrodes using a 3D-scanner - link: /tutorial/electrode - -- name: Virtual channel analysis of epilepsy MEG data - link: /tutorial/epilepsy - -- name: Event-related averaging and MEG planar gradient - link: /tutorial/eventrelatedaveraging - -- name: Parametric and non-parametric statistics on event-related fields - link: /tutorial/eventrelatedstatistics - -- name: Creating a BEM volume conduction model of the head for source reconstruction of EEG data - link: /tutorial/headmodel_eeg_bem - -- name: Creating a FEM volume conduction model of the head for source reconstruction of EEG data - link: /tutorial/headmodel_eeg_fem - -- name: Creating a volume conduction model of the head for source reconstruction of MEG data - link: /tutorial/headmodel_meg - -- name: Analysis of human ECoG and sEEG recordings - link: /tutorial/human_ecog - -- name: Cleaning artifacts using ICA - link: /tutorial/ica_artifact_cleaning - -- name: Introduction to the FieldTrip toolbox - link: /tutorial/introduction - -- name: Specifying the channel layout for plotting - link: /tutorial/layout - -- name: Making a memory efficient analysis pipeline - link: /tutorial/memory - -- name: Source reconstruction of event-related fields using minimum-norm estimation - link: /tutorial/minimumnormestimate - -- name: Analysis of monkey ECoG recordings - link: /tutorial/monkey_ecog - -- name: Channel and source analysis of mouse EEG - link: /tutorial/mouse_eeg - -- name: Classification of event-related MEG data using MVPA-Light - link: /tutorial/mvpa_light - -- name: Whole brain connectivity and network analysis - link: /tutorial/networkanalysis - -- name: Whole brain connectivity and network analysis - link: /tutorial/networkanalysis_eeg - -- name: Whole brain connectivity and network analysis - link: /tutorial/networkanalysis_old - -- name: Preprocessing and averaging of multi-channel NIRS data - link: /tutorial/nirs_multichannel - -- name: Preprocessing and averaging of single-channel NIRS data - link: /tutorial/nirs_singlechannel - -- name: Plotting data at the channel and source level - link: /tutorial/plotting - -- name: Preprocessing - Segmenting and reading trial-based EEG and MEG data - link: /tutorial/preprocessing - -- name: Preprocessing of EEG data and computing ERPs - link: /tutorial/preprocessing_erp - -- name: Preprocessing of Optically Pumped Magnetometer (OPM) data - link: /tutorial/preprocessing_opm - -- name: Creating a clean analysis pipeline - link: /tutorial/scripting - -- name: Sensor-level ERF, TFR and connectivity analyses - link: /tutorial/sensor_analysis - -- name: Extracting the brain state and events from continuous sleep EEG - link: /tutorial/sleep - -- name: Creating a source model for source reconstruction of MEG or EEG data - link: /tutorial/sourcemodel - -- name: Preprocessing and analysis of spike-train data - link: /tutorial/spike - -- name: Preprocessing and analysis of spike and local field potential data - link: /tutorial/spikefield - -- name: Time-frequency analysis using Hanning window, multitapers and wavelets - link: /tutorial/timefrequencyanalysis - -- name: Dealing with TMS-EEG datasets - link: /tutorial/tms-eeg - -- name: Visual or manual artifact rejection - link: /tutorial/visual_artifact_rejection - - name: Beamforming evoked fields and potentials in combined MEG/EEG data link: /workshop/aarhus/beamformingerf diff --git a/_data/tag/units.yml b/_data/tag/units.yml new file mode 100644 index 000000000..e8645f35f --- /dev/null +++ b/_data/tag/units.yml @@ -0,0 +1,3 @@ +- name: What are the units of the data and of the derived results? + link: /faq/units + diff --git a/tag/units.md b/tag/units.md new file mode 100644 index 000000000..d62f5f638 --- /dev/null +++ b/tag/units.md @@ -0,0 +1,4 @@ +--- +layout: tag +tag: units +---