From 8156249a9e6bb94543f9db30b2f876cfe3dc4e06 Mon Sep 17 00:00:00 2001 From: zpopov <64204837+zpopov@users.noreply.github.com> Date: Thu, 25 Jan 2024 13:39:37 +0100 Subject: [PATCH] we made some changes (#757) * agenda and other useful information added --- workshop/sofia2024.md | 118 ++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 113 insertions(+), 5 deletions(-) diff --git a/workshop/sofia2024.md b/workshop/sofia2024.md index c0d9a90bb..1b05a7dd0 100644 --- a/workshop/sofia2024.md +++ b/workshop/sofia2024.md @@ -3,11 +3,119 @@ title: FieldTrip workshop in Sofia, Bulgaria tags: sofia2024 --- -# FieldTrip workshop in Sofia, Bulgaria +# FieldTrip workshop Sofia 07-10.02.2024 -[The Insitute of Neurobiogy](https://inb.bas.bg/index-en.html) at the [Bulgarian Academy of Science](https://www.bas.bg/?lang=en) is organizing -a FieldTrip workshop in Sofia. -## Where +[The Institute of Neurobiology](https://inb.bas.bg/index-en.html) at the [Bulgarian Academy of Science](https://www.bas.bg/?lang=en) is organizing a FieldTrip worshop in Sofia. -The workshop will take place at [заседателната зала на Института по Биофизика и Биомедицинско Инженерство при БАН - блок 105](https://www.bas.bg/?page_id=3395). +# Where +The workshop will take place at **[заседателната зала на Института по Биофизика и Биомедицинско Инженерство при БАН - блок 105](https://www.bas.bg/?page_id=3395)** + +# Who + +Tzvetan Popov with local organizers and the generous hardware support by [MBrainTrain](https://mbraintrain.com/). + +## Program + +### **Day 1 - 7.02.2024** + +**Session I** + +- **09:00 – 09:15** Registration and welcome +- **09:15 – 10:15 *Lecture***: Introduction to EEG and the FieldTrip Toolbox +- **10:15 – 10:30** Coffee break +- **10:30 – 12:30 *[Hands-on***: Initiation to FieldTrip; Analyzing EEG data (event-related potentials)](https://www.notion.so/9b48e6f48d824aa488b7cea8084a827c?pvs=21) + +**Session II** + +- **12:30 – 13:30** Lunch +- **13:30 – 14:30 *Lecture***: Fundamentals of neuronal oscillations and synchrony +- **14:30 – 14:45** Coffee break +- **14:45 – 16:30** ***Hands-on***: Time-frequency Analysis of Power +- **16:30 – 17:00** Wrap-up-the-day and Summary + +### **Day 2- 08.02.2024** + +**Session III** + +- **9:00 – 10:45** ***Lecture***: Non-parametric permutation techniques +- **10:45 – 11:00** Coffee break +- **11:00 – 12:30 *Hands-On***: Statistical Analyses- cluster permutation strategies I +- **12:30 – 13:30** Lunch + +**Session IV** + +- **13:30 – 14:45** ***Hands-On***: Statistical Analyses- cluster permutation strategies II +- **14:45 – 15:00** Coffee break +- **15:00 – 16:30** ***Hands-On***: Statistical Analyses- MVPA and decoding +- **16:30 – 17:00** Wrap-up-the-day and Summary + +### **Day 3 - 09.02.2024** + +**Session V** + +- **9:00 – 10:30** ***Lecture***: Source reconstruction in FieldTrip +- **10:30 – 10:45** Coffee break +- **10:45 – 12:30** ***Hands-on***: Source Reconstruction on oscillatory data (beamformer) +- **12:30 – 13:30** Lunchs + +**Session VI** + +- **13:30 – 15:30** ***Lecture***: Connectivity analysis +- **15:30 – 15:45** Coffee break +- **15:45 – 16:30** ***Hands-on***: Connectivity analysis +- **16:30 – 17:00** Wrap-up-the-day and Closing remarks + +### **Day 4 - 10.02.2024** + +- **09:30 – 11:30** ***FieldTrip Playground*** (bring your own data) +- **11:30 – 11:45** Coffee break +- **11:45 – 13:30** ***FieldTrip Playground continued*** +- **13:30 – 14:00** Wrap-up-the-day and Closing remarks + +## Getting started with the hands-on sessions + +For the hands-on sessions you have to start MATLAB. Make sure you +have downloaded the hands-on data prior to the start of the workshop as +it is quite a large download. A recent version of FieldTrip can be +downloaded [here](https://depot.uni-konstanz.de/cgi-bin/exchange.pl?g=8qar4m9rlc), and the tutorial data can be downloaded [here](https://depot.uni-konstanz.de/cgi-bin/exchange.pl?g=25qbtdhtpp). + +Depending on the unzip program you are using (e.g., Winrar), the +name of the zip file might also appear as directory, resulting in +path_to_directory/fieldtrip-xxxxxxxx/fieldtrip-xxxxxxxx, i.e. the +FieldTrip directory in a FieldTrip directory. Please fix that by moving +all files one level up. + +After copying all files to your computer and unzipping then, you +start MATLAB. To ensure that the right version of FieldTrip is used, and + not another version (such as the one included in SPM or EEGLAB), you +type in the MATLAB command window + +```matlab +restoredefaultpath +cd path_to_directory/fieldtrip-xxxxxxxx +addpath(pwd) +ft_defaults +``` + +Please do NOT use the graphical path management tool from MATLAB. +In this hands-on session we’ll manage the path from the command line, +but in general you are much better off using a startup.m file than the +path GUI. + +Please do NOT add FieldTrip with all subdirectories, subdirectories + will be added automatically when needed, but only when needed. + +The `restoredefaultpath` command clears your path, keeping only the +official MATLAB toolboxes. The `addpath(pwd)` statement adds the +present working directory, i.e. the directory containing the fieldtrip +main functions. The `ft_defaults` command ensures that all required +subdirectories are added to the path. + +If you get the error “can’t find the command ft_defaults” you should check the present working directory. + +After installing FieldTrip to your path, you change into the data directory + +```matlab +cd path_to_directory/data +```