diff --git a/_data/citedby/11383615.yml b/_data/citedby/11383615.yml new file mode 100644 index 000000000..50e8c0a7a --- /dev/null +++ b/_data/citedby/11383615.yml @@ -0,0 +1,29 @@ +articleids: +- idtype: pmid + value: '38842507' +- idtype: doi + value: 10.1152/jn.00264.2023 +- idtype: pmcid + value: PMC11383615 +authors: +- authtype: Author + name: Hoffman SJ +- authtype: Author + name: Dotson NM +- authtype: Author + name: Lima V +- authtype: Author + name: Gray CM +epubdate: 2024 Jun 6 +fulljournalname: Journal of Neurophysiology +issue: '1' +pages: 206-225 +pmclivedate: '' +printpubdate: 2024 Jul 1 +pubdate: 2024 Jun 6 +sortdate: 2024/06/06 00:00 +source: J Neurophysiol +title: The primate cortical LFP exhibits multiple spectral and temporal gradients + and widespread task dependence during visual short-term memory +uid: '11383615' +volume: '132' diff --git a/_data/citedby/11406071.yml b/_data/citedby/11406071.yml new file mode 100644 index 000000000..ae3950c71 --- /dev/null +++ b/_data/citedby/11406071.yml @@ -0,0 +1,37 @@ +articleids: +- idtype: pmid + value: '39290840' +- idtype: doi + value: 10.1016/j.isci.2024.110738 +- idtype: pmcid + value: PMC11406071 +authors: +- authtype: Author + name: Sajovic J +- authtype: Author + name: Drevenšek G +- authtype: Author + name: Plut A +- authtype: Author + name: Eberlinc A +- authtype: Author + name: Kosmač Vrabec M +- authtype: Author + name: Setnikar Lesjak A +- authtype: Author + name: Selič Zupančič P +- authtype: Author + name: Drevenšek M +epubdate: 2024 Aug 21 +fulljournalname: iScience +issue: '9' +pages: '110738' +pmclivedate: 2024/09/17 +printpubdate: '' +pubdate: 2024 Aug 21 +sortdate: 2024/08/21 00:00 +source: iScience +title: 'Beyond the face: An interdisciplinary evaluation of satisfaction with appearance + in young people with orofacial clefts' +uid: '11406071' +volume: '27' diff --git a/_data/citedby/11407023.yml b/_data/citedby/11407023.yml new file mode 100644 index 000000000..a9a3af227 --- /dev/null +++ b/_data/citedby/11407023.yml @@ -0,0 +1,26 @@ +articleids: +- idtype: pmid + value: '39290842' +- idtype: doi + value: 10.1016/j.isci.2024.110802 +- idtype: pmcid + value: PMC11407023 +authors: +- authtype: Author + name: Markiewicz R +- authtype: Author + name: Segaert K +- authtype: Author + name: Mazaheri A +epubdate: 2024 Aug 23 +fulljournalname: iScience +issue: '9' +pages: '110802' +pmclivedate: 2024/09/17 +printpubdate: '' +pubdate: 2024 Aug 23 +sortdate: 2024/08/23 00:00 +source: iScience +title: Brain-to-brain coupling forecasts future joint action outcomes +uid: '11407023' +volume: '27' diff --git a/_data/citedby/11408537.yml b/_data/citedby/11408537.yml new file mode 100644 index 000000000..9342278de --- /dev/null +++ b/_data/citedby/11408537.yml @@ -0,0 +1,39 @@ +articleids: +- idtype: pmid + value: '39115626' +- idtype: doi + value: 10.1007/s10548-024-01073-z +- idtype: pmcid + value: PMC11408537 +authors: +- authtype: Author + name: Valt C +- authtype: Author + name: Tavella A +- authtype: Author + name: Berchio C +- authtype: Author + name: Seebold D +- authtype: Author + name: Sportelli L +- authtype: Author + name: Rampino A +- authtype: Author + name: Salisbury DF +- authtype: Author + name: Bertolino A +- authtype: Author + name: Pergola G +epubdate: 2024 Aug 8 +fulljournalname: Brain Topography +issue: '6' +pages: 993-1009 +pmclivedate: 2024/09/19 +printpubdate: '2024' +pubdate: 2024 Aug 8 +sortdate: 2024/08/08 00:00 +source: Brain Topogr +title: 'MEG Microstates: An Investigation of Underlying Brain Sources and Potential + Neurophysiological Processes' +uid: '11408537' +volume: '37' diff --git a/_data/citedby/11408544.yml b/_data/citedby/11408544.yml new file mode 100644 index 000000000..f0c5b526e --- /dev/null +++ b/_data/citedby/11408544.yml @@ -0,0 +1,31 @@ +articleids: +- idtype: pmid + value: '39066878' +- idtype: doi + value: 10.1007/s10548-024-01071-1 +- idtype: pmcid + value: PMC11408544 +authors: +- authtype: Author + name: Sasaki R +- authtype: Author + name: Hand BJ +- authtype: Author + name: Liao WY +- authtype: Author + name: Semmler JG +- authtype: Author + name: Opie GM +epubdate: 2024 Jul 27 +fulljournalname: Brain Topography +issue: '6' +pages: 1158-1170 +pmclivedate: 2024/09/19 +printpubdate: '2024' +pubdate: 2024 Jul 27 +sortdate: 2024/07/27 00:00 +source: Brain Topogr +title: Investigating the Effects of Repetitive Paired-Pulse Transcranial Magnetic + Stimulation on Visuomotor Training Using TMS-EEG +uid: '11408544' +volume: '37' diff --git a/_data/citedby/11410217.yml b/_data/citedby/11410217.yml new file mode 100644 index 000000000..f39667902 --- /dev/null +++ b/_data/citedby/11410217.yml @@ -0,0 +1,61 @@ +articleids: +- idtype: pmid + value: '39241107' +- idtype: doi + value: 10.1371/journal.pbio.3002774 +- idtype: pmcid + value: PMC11410217 +authors: +- authtype: Author + name: Cleary DR +- authtype: Author + name: Tchoe Y +- authtype: Author + name: Bourhis A +- authtype: Author + name: Dickey CW +- authtype: Author + name: Stedelin B +- authtype: Author + name: Ganji M +- authtype: Author + name: Lee SH +- authtype: Author + name: Lee J +- authtype: Author + name: Siler DA +- authtype: Author + name: Brown EC +- authtype: Author + name: Rosen BQ +- authtype: Author + name: Kaestner E +- authtype: Author + name: Yang JC +- authtype: Author + name: Soper DJ +- authtype: Author + name: Han SJ +- authtype: Author + name: Paulk AC +- authtype: Author + name: Cash SS +- authtype: Author + name: Raslan AM +- authtype: Author + name: Dayeh SA +- authtype: Author + name: Halgren E +epubdate: 2024 Sep 6 +fulljournalname: PLOS Biology +issue: '9' +pages: e3002774 +pmclivedate: 2024/09/18 +printpubdate: '' +pubdate: 2024 Sep 6 +sortdate: 2024/09/06 00:00 +source: PLoS Biol +title: Syllable processing is organized in discrete subregions of the human superior + temporal gyrus +uid: '11410217' +volume: '22' diff --git a/_data/citedby/11410353.yml b/_data/citedby/11410353.yml new file mode 100644 index 000000000..9bb80e465 --- /dev/null +++ b/_data/citedby/11410353.yml @@ -0,0 +1,24 @@ +articleids: +- idtype: pmid + value: '0' +- idtype: doi + value: 10.1162/nol_a_00147 +- idtype: pmcid + value: PMC11410353 +authors: +- authtype: Author + name: Politzer-Ahles S +- authtype: Author + name: Jap BA +epubdate: 2024 Sep 11 +fulljournalname: Neurobiology of Language +issue: '4' +pages: 818-843 +pmclivedate: 2024/09/19 +printpubdate: '' +pubdate: 2024 Sep 11 +sortdate: 2024/09/11 00:00 +source: Neurobiol Lang (Camb) +title: Can the Mismatch Negativity Really Be Elicited by Abstract Linguistic Contrasts? +uid: '11410353' +volume: '5' diff --git a/_data/citedby/11410390.yml b/_data/citedby/11410390.yml new file mode 100644 index 000000000..fe17eab9f --- /dev/null +++ b/_data/citedby/11410390.yml @@ -0,0 +1,24 @@ +articleids: +- idtype: pmid + value: '39042098' +- idtype: doi + value: 10.1088/1361-6560/ad66a9 +- idtype: pmcid + value: PMC11410390 +- idtype: MID + value: NIHMS2019582 +authors: +- authtype: Author + name: Ponasso GN +epubdate: 2024 Aug 28 +fulljournalname: Physics in medicine and biology +issue: '17' +pages: 10.1088/1361-6560/ad66a9 +pmclivedate: '' +printpubdate: '' +pubdate: 2024 Aug 28 +sortdate: 2024/08/28 00:00 +source: Phys Med Biol +title: A survey on integral equations for bioelectric modeling +uid: '11410390' +volume: '69' diff --git a/_data/tag/continuous.yml b/_data/tag/continuous.yml index fa36cbf47..f33ef5d41 100644 --- a/_data/tag/continuous.yml +++ b/_data/tag/continuous.yml @@ -1,3 +1,6 @@ +- name: Why should I set continuous to yes for CTF data? + link: /faq/continuous + - name: How can I do time-frequency analysis on continuous data? link: /faq/how_can_i_do_time-frequency_analysis_on_continuous_data diff --git a/_data/tag/ctf.yml b/_data/tag/ctf.yml index 0f7fef3e1..3796acdb0 100644 --- a/_data/tag/ctf.yml +++ b/_data/tag/ctf.yml @@ -16,6 +16,9 @@ - name: Can I create an artificial CTF dataset using MATLAB? link: /example/writing_simulated_data_to_a_ctf_dataset +- name: Why should I set continuous to yes for CTF data? + link: /faq/continuous + - name: How are the Left and Right Pre-Auricular (LPA and RPA) points defined? link: /faq/how_are_the_lpa_and_rpa_points_defined diff --git a/_data/tag/distcomp.yml b/_data/tag/distcomp.yml index 758caf9a9..5a8407399 100644 --- a/_data/tag/distcomp.yml +++ b/_data/tag/distcomp.yml @@ -1,3 +1,6 @@ +- name: How can I distribute a batch of jobs? + link: /faq/how_can_i_distribute_a_batch_of_jobs + - name: How to get started with the MATLAB distributed computing toolbox? link: /faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox diff --git a/_data/tag/entropy.yml b/_data/tag/entropy.yml index 0e92aa103..7285aab93 100644 --- a/_data/tag/entropy.yml +++ b/_data/tag/entropy.yml @@ -1,3 +1,3 @@ -- name: Performing modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data +- name: Perform modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data link: /example/entropy_analysis diff --git a/_data/tag/example.yml b/_data/tag/example.yml index 97df8942f..06fb666b8 100644 --- a/_data/tag/example.yml +++ b/_data/tag/example.yml @@ -4,6 +4,9 @@ - name: Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA link: /example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa +- name: BIDS - the brain imaging data structure + link: /example/bids + - name: Converting an example audio dataset for sharing in BIDS link: /example/bids_audio @@ -103,7 +106,7 @@ - name: Align EEG electrode positions to BEM headmodel link: /example/electrodes2bem -- name: Performing modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data +- name: Perform modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data link: /example/entropy_analysis - name: Compute EEG leadfields using a FEM headmodel @@ -115,7 +118,7 @@ - name: Fixing a missing channel link: /example/fixing_a_missing_sensor -- name: Fitting oscillations and one-over-F (FOOOF). +- name: Fitting oscillations and one-over-F (FOOOF) link: /example/fooof - name: Example real-time average @@ -190,6 +193,9 @@ - name: Simulate an oscillatory signal with phase resetting link: /example/phase_reset +- name: Find the orientation of planar gradiometers + link: /example/planar_orientation + - name: Plotting the result of source reconstruction on a cortical mesh link: /example/plotting_source_surface @@ -214,6 +220,9 @@ - name: Create MNI-aligned grids in individual head-space link: /example/sourcemodel_aligned2mni +- name: Fitting a template MRI to the MEG Polhemus head shape + link: /example/sphere_fitting + - name: Analyze Steady-State Visual Evoked Potentials (SSVEPs) link: /example/ssvep diff --git a/_data/tag/faq.yml b/_data/tag/faq.yml index 612b7bd7a..19a9aefdc 100644 --- a/_data/tag/faq.yml +++ b/_data/tag/faq.yml @@ -22,6 +22,9 @@ - name: Can I get an offline version of the documentation on the website? link: /faq/can_i_get_an_offline_version_of_the_wiki_documentation +- name: Can I organize my own FieldTrip workshop? + link: /faq/can_i_organize_my_own_workshop + - name: Can I prevent "external" toolboxes from being added to my MATLAB path? link: /faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path @@ -52,6 +55,9 @@ - name: Can I use FieldTrip without MATLAB license? link: /faq/compiled +- name: Why should I set continuous to yes for CTF data? + link: /faq/continuous + - name: How are the different head and MRI coordinate systems defined? link: /faq/coordsys @@ -142,6 +148,9 @@ - name: How can I determine the onset of an effect? link: /faq/how_can_i_determine_the_onset_of_an_effect +- name: How can I distribute a batch of jobs? + link: /faq/how_can_i_distribute_a_batch_of_jobs + - name: How can I do time-frequency analysis on continuous data? link: /faq/how_can_i_do_time-frequency_analysis_on_continuous_data @@ -175,6 +184,9 @@ - name: How can I keep track of changes to the code? link: /faq/how_can_i_keep_track_of_the_changes_to_the_code +- name: How can I map source locations onto an anatomical label in an atlas? + link: /faq/how_can_i_map_source_locations_between_two_different_representations + - name: How can I merge two datasets that were acquired simultaneously with different amplifiers? link: /faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers @@ -244,6 +256,9 @@ - name: How does a difference in trial numbers per condition affect my statistical test link: /faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test +- name: How does ft_prepare_neighbours work? + link: /faq/how_does_ft_prepare_neighbours_work + - name: How does the CTF higher-order gradiometer work? link: /faq/how_does_the_ctf_higher-order_gradiometer_work @@ -400,6 +415,9 @@ - name: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this? link: /faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this +- name: What is meant by time-frequency trade off? + link: /faq/timefreqtradeoff + - name: How can I check or decipher the sequence of triggers in my data? link: /faq/triggers @@ -433,6 +451,9 @@ - name: What does "padding not sufficient for requested frequency resolution" mean? link: /faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean +- name: What is a good way to save images for later processing in other software? + link: /faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software + - name: What is the conductivity of the brain, CSF, skull and skin tissue? link: /faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue diff --git a/_data/tag/fooof.yml b/_data/tag/fooof.yml index 9f6a5145d..b3b9d25a9 100644 --- a/_data/tag/fooof.yml +++ b/_data/tag/fooof.yml @@ -1,3 +1,3 @@ -- name: Fitting oscillations and one-over-F (FOOOF). +- name: Fitting oscillations and one-over-F (FOOOF) link: /example/fooof diff --git a/_data/tag/freq.yml b/_data/tag/freq.yml index 043872206..cb57c25ef 100644 --- a/_data/tag/freq.yml +++ b/_data/tag/freq.yml @@ -40,6 +40,9 @@ - name: How does MTMCONVOL work? link: /faq/mtmconvol +- name: What is meant by time-frequency trade off? + link: /faq/timefreqtradeoff + - name: What are the differences between the old and the new implementation of 'mtmconvol' in ft_freqanalyis? link: /faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis diff --git a/_data/tag/headmodel.yml b/_data/tag/headmodel.yml index 44c8e3efe..4ba058382 100644 --- a/_data/tag/headmodel.yml +++ b/_data/tag/headmodel.yml @@ -19,6 +19,9 @@ - name: Create MNI-aligned grids in individual head-space link: /example/sourcemodel_aligned2mni +- name: Fitting a template MRI to the MEG Polhemus head shape + link: /example/sphere_fitting + - name: Testing BEM created EEG lead fields link: /example/testing_bem_created_leadfields diff --git a/_data/tag/layout.yml b/_data/tag/layout.yml index 8b090cb58..c42dbf780 100644 --- a/_data/tag/layout.yml +++ b/_data/tag/layout.yml @@ -7,6 +7,9 @@ - name: How do I construct a layout file for the plotting functions? link: /faq/how_do_i_construct_a_layout_file_for_the_plotting_functions +- name: What are the different Neuromag/Elekta/Megin and Yokogawa layouts good for? + link: /faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for + - name: What is the format of the layout file which is used for plotting? link: /faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting diff --git a/_data/tag/matlab.yml b/_data/tag/matlab.yml index c0bbf7565..72513dfe0 100644 --- a/_data/tag/matlab.yml +++ b/_data/tag/matlab.yml @@ -16,6 +16,9 @@ - name: How fast is the FieldTrip buffer for realtime data streaming? link: /faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming +- name: How many lines of code does FieldTrip consist of? + link: /faq/how_many_lines_of_code_does_fieldtrip_consist_of + - name: Installation and setting up the path link: /faq/installation diff --git a/_data/tag/meg-language.yml b/_data/tag/meg-language.yml index 7f986a4ac..59784bf12 100644 --- a/_data/tag/meg-language.yml +++ b/_data/tag/meg-language.yml @@ -46,7 +46,7 @@ - name: Preprocessing - Segmenting and reading trial-based EEG and MEG data link: /tutorial/preprocessing -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Time-frequency analysis using Hanning window, multitapers and wavelets diff --git a/_data/tag/meg.yml b/_data/tag/meg.yml index f5dc76509..9db1b244f 100644 --- a/_data/tag/meg.yml +++ b/_data/tag/meg.yml @@ -46,6 +46,9 @@ - name: Create MNI-aligned grids in individual head-space link: /example/sourcemodel_aligned2mni +- name: Fitting a template MRI to the MEG Polhemus head shape + link: /example/sphere_fitting + - name: Use denoising source separation (DSS) to remove ECG artifacts link: /example/use_denoising_source_separation_dss_to_remove_ecg_artifacts @@ -205,7 +208,7 @@ - name: Sensor-level ERF, TFR and connectivity analyses link: /tutorial/sensor_analysis -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Time-frequency analysis using Hanning window, multitapers and wavelets diff --git a/_data/tag/mri.yml b/_data/tag/mri.yml index f038017d1..1b9748ac6 100644 --- a/_data/tag/mri.yml +++ b/_data/tag/mri.yml @@ -76,6 +76,6 @@ - name: Source reconstruction of event-related fields using minimum-norm estimation link: /tutorial/minimumnormestimate -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel diff --git a/_data/tag/plotting.yml b/_data/tag/plotting.yml index 5831528a1..90a75d228 100644 --- a/_data/tag/plotting.yml +++ b/_data/tag/plotting.yml @@ -31,6 +31,12 @@ - name: I am having problems printing figures that use opacity link: /faq/i_am_having_problems_printing_figures_that_use_opacity +- name: What are the different Neuromag/Elekta/Megin and Yokogawa layouts good for? + link: /faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for + +- name: What is a good way to save images for later processing in other software? + link: /faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software + - name: What is the format of the layout file which is used for plotting? link: /faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting @@ -70,7 +76,7 @@ - name: Sensor-level ERF, TFR and connectivity analyses link: /tutorial/sensor_analysis -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Time-frequency analysis using Hanning window, multitapers and wavelets diff --git a/_data/tag/preprocessing.yml b/_data/tag/preprocessing.yml index 65f16b018..1ecdd5af1 100644 --- a/_data/tag/preprocessing.yml +++ b/_data/tag/preprocessing.yml @@ -31,6 +31,9 @@ - name: How can I append the files of two separate recordings? link: /faq/append_files +- name: Why should I set continuous to yes for CTF data? + link: /faq/continuous + - name: What dataformats are supported? link: /faq/dataformat diff --git a/_data/tag/source.yml b/_data/tag/source.yml index 90f6cc291..d554010b4 100644 --- a/_data/tag/source.yml +++ b/_data/tag/source.yml @@ -145,7 +145,7 @@ - name: Channel and source analysis of mouse EEG link: /tutorial/mouse_eeg -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Beamforming oscillatory responses in MEG data diff --git a/_data/tag/sourcemodel.yml b/_data/tag/sourcemodel.yml index 093365737..b9ea73bbc 100644 --- a/_data/tag/sourcemodel.yml +++ b/_data/tag/sourcemodel.yml @@ -7,7 +7,7 @@ - name: Template models for source reconstruction link: /template/sourcemodel -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Creation of headmodels and sourcemodels for source reconstruction diff --git a/_data/tag/tutorial.yml b/_data/tag/tutorial.yml index bbde92693..3c04d97fc 100644 --- a/_data/tag/tutorial.yml +++ b/_data/tag/tutorial.yml @@ -127,7 +127,7 @@ - name: Extracting the brain state and events from continuous sleep EEG link: /tutorial/sleep -- name: Creating a sourcemodel for source reconstruction of MEG or EEG data +- name: Creating a source model for source reconstruction of MEG or EEG data link: /tutorial/sourcemodel - name: Preprocessing and analysis of spike-train data diff --git a/_includes/footer b/_includes/footer index 918e86977..75e65ab2b 100644 --- a/_includes/footer +++ b/_includes/footer @@ -1,8 +1,9 @@ - - - + + + +