diff --git a/_includes/seealso b/_includes/seealso index 5654d7cdc..1a7da3efb 100644 --- a/_includes/seealso +++ b/_includes/seealso @@ -1,5 +1,6 @@ diff --git a/development/module/connectivity.md b/development/module/connectivity.md index ce48bbaab..a85c67f3f 100644 --- a/development/module/connectivity.md +++ b/development/module/connectivity.md @@ -66,4 +66,4 @@ The literature references to the implemented methods are given [here](/reference See also these tutorials: -{% include seealso tag1="tutorial" tag2="connectivity" %} +{% include seealso category="tutorial" tag1="connectivity" %} diff --git a/development/module/forward.md b/development/module/forward.md index c46501d36..485061366 100644 --- a/development/module/forward.md +++ b/development/module/forward.md @@ -166,14 +166,14 @@ The forward module functions are written such that they operate correctly if all The literature references to the implemented methods are given [here](/references_to_implemented_methods). -### Frequently asked questions about forward and inverse modeling: +### Frequently asked questions on forward and inverse modeling -{% include seealso tag1="faq" tag2="source" %} +{% include seealso category="faq" tag1="source" %} -### Example material for forward and inverse modeling: +### Example material on forward and inverse modeling -{% include seealso tag1="example" tag2="source" %} +{% include seealso category="example" tag1="source" %} -### Tutorial material for forward and inverse modeling: +### Tutorial material on forward and inverse modeling -{% include seealso tag1="tutorial" tag2="source" %} +{% include seealso category="tutorial" tag1="source" %} diff --git a/development/module/inverse.md b/development/module/inverse.md index 69fe8d0f1..fcdd57bce 100644 --- a/development/module/inverse.md +++ b/development/module/inverse.md @@ -79,14 +79,14 @@ Most functions have additional optional input arguments that are specified as ke The literature references to the implemented methods are given [here](/references_to_implemented_methods). -### Frequently asked questions about forward and inverse modeling: +### See also these tutorials -{% include seealso tag1="faq" tag2="source" %} +{% include seealso category="tutorial" tag1="source" %} -### Example material for forward and inverse modeling: +### See also these frequently asked questions -{% include seealso tag1="example" tag2="source" %} +{% include seealso category="faq" tag1="source" %} -### Tutorial material for forward and inverse modeling: +### See also these examples -{% include seealso tag1="tutorial" tag2="source" %} +{% include seealso category="example" tag1="source" %} diff --git a/development/module/qsub.md b/development/module/qsub.md index 62748fe3f..8d13204dc 100644 --- a/development/module/qsub.md +++ b/development/module/qsub.md @@ -17,4 +17,4 @@ This toolbox has been developed as part of the FieldTrip toolbox, but can be use ## Frequently asked questions about distributed computing using this toolbox -{% include seealso tag1="faq" tag2="qsub" %} +{% include seealso category="faq" tag1="qsub" %} diff --git a/development/project/consistency.md b/development/project/consistency.md index fd0498100..673672908 100644 --- a/development/project/consistency.md +++ b/development/project/consistency.md @@ -8,7 +8,7 @@ title: Check the consistency between the documentation and the implementations ## Objectives -- the reference documentation should be included in the m-files (i.e. "help function_name") +- the reference documentation should be included in the m-files (i.e., `help functionname`) - the documentation should be complete w.r.t. the underlying implementation - the documentation should be up-to-date, and should be easily kept up-to-date - the structure between the functions should become more transparent diff --git a/development/project/nutmeg.md b/development/project/nutmeg.md index 64ca6518a..39b01f876 100644 --- a/development/project/nutmeg.md +++ b/development/project/nutmeg.md @@ -1,7 +1,7 @@ --- title: Integration with NUTMEG redirect_from: -- /development/nutmeg/ + - /development/nutmeg/ --- {% include /shared/development/warning.md %} diff --git a/development/project/spike.md b/development/project/spike.md index ceddeb247..974aeb27b 100644 --- a/development/project/spike.md +++ b/development/project/spike.md @@ -15,7 +15,7 @@ The following steps have been don - test and start to use svn (done) - add functions (done) - check code duplication (done) -- check reference doc, i.e. "help functionname" (done) +- check reference doc, i.e., `help functionname` (done) - move to fieldtrip/contrib/spike The following steps still need some wor diff --git a/development/realtime.md b/development/realtime.md index 551cdde22..417ecbd0c 100644 --- a/development/realtime.md +++ b/development/realtime.md @@ -19,11 +19,11 @@ The page [scratchpad](/development/realtime/scratchpad) contains some loose ends ### Frequently asked questions -{% include seealso tag1="faq" tag2="realtime" %} +{% include seealso category="faq" tag1="realtime" %} ### Example scripts -{% include seealso tag1="example" tag2="realtime" %} +{% include seealso category="example" tag1="realtime" %} ### General tips and tricks diff --git a/development/realtime/arduino.md b/development/realtime/arduino.md index 28a9c9507..ed8dee376 100644 --- a/development/realtime/arduino.md +++ b/development/realtime/arduino.md @@ -90,7 +90,6 @@ The purpose of this device is to demonstrate that something can be controlled. I It is based on a ~~[3V3 Arduino Pro Mini](http://arduino.cc/en/Main/ArduinoBoardProMini)~~ [5V Arduino Mini](http://arduino.cc/en/Main/ArduinoBoardMini). - SPI: 10 (SS), 11 (MOSI), 12 (MISO), 13 (SCK) - - External Interrupts: 2 and 3 (?) Wireless connectivity is provided by a [RFM12B](https://www.sparkfun.com/products/9582) module and uses this [library](http://jeelabs.net/pub/docs/jeelib/RF12_8cpp.html). @@ -100,5 +99,4 @@ Wireless connectivity is provided by a [RFM12B](https://www.sparkfun.com/product ## See also - [development/realtime/modulareeg](/development/realtime/modulareeg) for the bluetooth OpenEEG interface - - [here on GitHub](https://github.com/fieldtrip/fieldtrip/tree/master/realtime/src/arduino) for the Arduino specific source code diff --git a/discussion_list.md b/discussion_list.md index 2d4a6bdea..ca1c2988d 100644 --- a/discussion_list.md +++ b/discussion_list.md @@ -23,6 +23,6 @@ You can browse the archived contributions to the discussion list [here](http://m {% include searchlistarchive %} -## See also +## See also these frequently asked questions -{% include seealso tag1="faq" tag2="email" %} +{% include seealso category="faq" tag1="email" %} diff --git a/example.md b/example.md index 3c4434afa..4af20c9f1 100644 --- a/example.md +++ b/example.md @@ -60,7 +60,7 @@ See also the [tutorials](/tutorial) and [frequently asked questions](/faq). - [Fit a dipole to the tactile ERF after mechanical stimulation](/example/dipolefit_somatosensory_erf) - [How to create a head model if you do not have an individual MRI](/example/fittemplate) - [Localizing the sources underlying the difference in event-related fields](/example/difference_erf) -- [Make leadfields using different headmodels](/example/make_leadfields_using_different_headmodels) +- [Make MEG leadfields using different headmodels](/example/make_leadfields_using_different_headmodels) - [Read neuromag .fif mri and create a MNI-aligned single-shell head model](/example/neuromag_aligned2mni) - [Symmetric dipole pairs for beamforming](/example/symmetry) - [Testing BEM created lead fields](/example/testing_bem_created_leadfields) diff --git a/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md b/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md index 5864f8a2c..e09a9414a 100644 --- a/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md +++ b/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md @@ -1,6 +1,7 @@ --- title: Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA -tags: [example, statistics, freq, cluster] +category: example +tags: [statistics, freq, cluster] --- # Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA diff --git a/example/bids.md b/example/bids.md index 7294f059f..e5c45572b 100644 --- a/example/bids.md +++ b/example/bids.md @@ -1,6 +1,7 @@ --- title: BIDS - the brain imaging data structure -tags: [example, bids, sharing] +category: example +tags: [bids, sharing] --- # BIDS - the brain imaging data structure diff --git a/example/bids_audio.md b/example/bids_audio.md index 5735e5a61..fd6f90b34 100644 --- a/example/bids_audio.md +++ b/example/bids_audio.md @@ -1,6 +1,7 @@ --- title: Converting an example audio dataset for sharing in BIDS -tags: [example, bids, sharing, audio] +category: example +tags: [bids, sharing, audio] --- # Converting an example audio dataset for sharing in BIDS diff --git a/example/bids_behavioral.md b/example/bids_behavioral.md index 558d4cddd..19da8ab01 100644 --- a/example/bids_behavioral.md +++ b/example/bids_behavioral.md @@ -1,6 +1,7 @@ --- title: Converting an example behavioral dataset for sharing in BIDS -tags: [example, bids, sharing, behavioral] +category: example +tags: [bids, sharing, behavioral] --- # Converting an example behavioral dataset for sharing in BIDS diff --git a/example/bids_eeg.md b/example/bids_eeg.md index 32374e158..c8aadab4c 100644 --- a/example/bids_eeg.md +++ b/example/bids_eeg.md @@ -1,6 +1,7 @@ --- title: Converting an example EEG dataset for sharing in BIDS -tags: [example, bids, sharing] +category: example +tags: [bids, sharing] --- # Converting an example EEG dataset for sharing in BIDS diff --git a/example/bids_emg.md b/example/bids_emg.md index 44971341b..469b71590 100644 --- a/example/bids_emg.md +++ b/example/bids_emg.md @@ -1,6 +1,7 @@ --- title: Converting an example EMG dataset for sharing in BIDS -tags: [example, bids, sharing, emg] +category: example +tags: [bids, sharing, emg] --- # Converting an example EMG dataset for sharing in BIDS diff --git a/example/bids_eyetracker.md b/example/bids_eyetracker.md index 6d14aacc7..f68f8f39e 100644 --- a/example/bids_eyetracker.md +++ b/example/bids_eyetracker.md @@ -1,6 +1,7 @@ --- title: Converting an example eyetracker dataset for sharing in BIDS -tags: [example, bids, sharing, eyelink, smi, tobii] +category: example +tags: [bids, sharing, eyelink, smi, tobii] --- # Converting an example eye tracker dataset for sharing in BIDS diff --git a/example/bids_meg.md b/example/bids_meg.md index c31125dc9..1fe2d7686 100644 --- a/example/bids_meg.md +++ b/example/bids_meg.md @@ -1,6 +1,7 @@ --- title: Converting an example MEG dataset for sharing in BIDS -tags: [example, bids, sharing, meg, ctf] +category: example +tags: [bids, sharing, meg, ctf] --- # Converting an example MEG dataset for sharing in BIDS diff --git a/example/bids_motion.md b/example/bids_motion.md index 9576ec3bc..6b30b2c15 100644 --- a/example/bids_motion.md +++ b/example/bids_motion.md @@ -1,6 +1,7 @@ --- title: Converting an example motion tracking dataset for sharing in BIDS -tags: [example, bids, sharing, motion, qualisys, optotrak, xsens] +category: example +tags: [bids, sharing, motion, qualisys, optotrak, xsens] --- # Converting an example motion tracking dataset for sharing in BIDS diff --git a/example/bids_mous.md b/example/bids_mous.md index 0e702a638..c8b16eecc 100644 --- a/example/bids_mous.md +++ b/example/bids_mous.md @@ -1,6 +1,7 @@ --- title: Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS -tags: [example, bids, sharing, anonymize] +category: example +tags: [bids, sharing, anonymize] --- # Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS diff --git a/example/bids_nirs.md b/example/bids_nirs.md index a1c4182da..d3885dc95 100644 --- a/example/bids_nirs.md +++ b/example/bids_nirs.md @@ -1,6 +1,7 @@ --- title: Converting an example NIRS dataset for sharing in BIDS -tags: [example, bids, sharing, nirs, artinis, homer, snirf] +category: example +tags: [bids, sharing, nirs, artinis, homer, snirf] --- # Converting an example NIRS dataset for sharing in BIDS diff --git a/example/bids_pom.md b/example/bids_pom.md index 93c75fff0..b85a166d3 100644 --- a/example/bids_pom.md +++ b/example/bids_pom.md @@ -1,6 +1,7 @@ --- title: Combining simultaneous recordings in BIDS -tags: [example, bids, sharing] +category: example +tags: [bids, sharing] --- # Combining simultaneous recordings in BIDS diff --git a/example/bids_video.md b/example/bids_video.md index d60ac5771..4a7c99988 100644 --- a/example/bids_video.md +++ b/example/bids_video.md @@ -1,6 +1,7 @@ --- title: Converting an example video dataset for sharing in BIDS -tags: [example, bids, sharing, video] +category: example +tags: [bids, sharing, video] --- # Converting an example video dataset for sharing in BIDS diff --git a/example/biosemi.md b/example/biosemi.md index 807837951..7909c533d 100644 --- a/example/biosemi.md +++ b/example/biosemi.md @@ -1,6 +1,7 @@ --- title: Example analysis pipeline for Biosemi data -tags: [example, eeg, dataformat, biosemi, bdf] +category: example +tags: [eeg, dataformat, biosemi, bdf] --- # Example analysis pipeline for Biosemi data diff --git a/example/checkconfig.md b/example/checkconfig.md index 00c7f7bb9..f39ab9774 100644 --- a/example/checkconfig.md +++ b/example/checkconfig.md @@ -1,6 +1,7 @@ --- title: How to use ft_checkconfig -tags: [example, cfg] +category: example +tags: [cfg] --- # How to use ft_checkconfig diff --git a/example/coherence_snr.md b/example/coherence_snr.md index f4312bf75..686dae8f9 100644 --- a/example/coherence_snr.md +++ b/example/coherence_snr.md @@ -1,6 +1,7 @@ --- title: Effect of SNR on Coherence -tags: [example, freq, coherence] +category: example +tags: [freq, coherence] --- # Effect of SNR on Coherence diff --git a/example/combined_eeg_and_meg_source_reconstruction.md b/example/combined_eeg_and_meg_source_reconstruction.md index 9e4223a1e..35fc84079 100644 --- a/example/combined_eeg_and_meg_source_reconstruction.md +++ b/example/combined_eeg_and_meg_source_reconstruction.md @@ -1,6 +1,7 @@ --- title: Combined EEG and MEG source reconstruction -tags: [example, eeg, meg, headmodel, source] +category: example +tags: [eeg, meg, headmodel, source] --- # Combined EEG and MEG source reconstruction diff --git a/example/combineplanar_pipelineorder.md b/example/combineplanar_pipelineorder.md index 8d132eebd..d47cb6fdd 100644 --- a/example/combineplanar_pipelineorder.md +++ b/example/combineplanar_pipelineorder.md @@ -1,6 +1,7 @@ --- title: The correct pipeline order for combining planar MEG channels -tags: [example, planar, gradient, combineplanar] +category: example +tags: [planar, gradient, combineplanar] --- # The correct pipeline order for combining planar MEG channels diff --git a/example/common_filters_in_beamforming.md b/example/common_filters_in_beamforming.md index 364d5f56d..e83b20f4d 100644 --- a/example/common_filters_in_beamforming.md +++ b/example/common_filters_in_beamforming.md @@ -1,6 +1,7 @@ --- title: Common filters in beamforming -tags: [example, meg, freq, source, fixme] +category: example +tags: [meg, freq, source, fixme] --- # Common filters in beamforming diff --git a/example/compute_forward_simulated_data.md b/example/compute_forward_simulated_data.md index 84fadd25e..72ffd1e3d 100644 --- a/example/compute_forward_simulated_data.md +++ b/example/compute_forward_simulated_data.md @@ -1,6 +1,7 @@ --- title: Compute forward simulated data using ft_dipolesimulation -tags: [example, eeg, source, headmodel, dipole, simulation] +category: example +tags: [eeg, source, headmodel, dipole, simulation] --- # Compute forward simulated data using ft_dipolesimulation diff --git a/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md b/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md index 546e36c12..ab52b3f39 100644 --- a/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md +++ b/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md @@ -1,6 +1,7 @@ --- title: Compute forward simulated data and apply a beamformer scan -tags: [example, meg, source, dipole] +category: example +tags: [meg, source, dipole] --- # Compute forward simulated data and apply a beamformer scan diff --git a/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md b/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md index cf8562502..43ca1470d 100644 --- a/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md +++ b/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md @@ -1,6 +1,7 @@ --- title: Compute forward simulated data and apply a dipole fit -tags: [example, eeg, source, dipole] +category: example +tags: [eeg, source, dipole] --- # Compute forward simulated data and apply a dipole fit diff --git a/example/compute_leadfield.md b/example/compute_leadfield.md index a9e1f816f..eae4aa839 100644 --- a/example/compute_leadfield.md +++ b/example/compute_leadfield.md @@ -1,6 +1,7 @@ --- title: Compute forward simulated data with the low-level ft_compute_leadfield -tags: [example, eeg, source, headmodel, dipole, simulation] +category: example +tags: [eeg, source, headmodel, dipole, simulation] --- # Compute forward simulated data with the low-level ft_compute_leadfield diff --git a/example/connectivity_conditional_granger.md b/example/connectivity_conditional_granger.md index ce1f1a349..09836d6ff 100644 --- a/example/connectivity_conditional_granger.md +++ b/example/connectivity_conditional_granger.md @@ -1,6 +1,7 @@ --- title: Conditional Granger causality in the frequency domain -tags: [example, freq, connectivity, granger] +category: example +tags: [freq, connectivity, granger] --- # Conditional Granger causality in the frequency domain diff --git a/example/coregistration_quality_control.md b/example/coregistration_quality_control.md index e838ae032..aada432c9 100644 --- a/example/coregistration_quality_control.md +++ b/example/coregistration_quality_control.md @@ -1,6 +1,7 @@ --- title: Check the quality of the anatomical coregistration -tags: [example, source, mri, plotting] +category: example +tags: [source, mri, plotting] --- # Check the quality of the anatomical coregistration diff --git a/example/correlation_analysis_in_fmri_data.md b/example/correlation_analysis_in_fmri_data.md index 9c94ef967..fa3bd7619 100644 --- a/example/correlation_analysis_in_fmri_data.md +++ b/example/correlation_analysis_in_fmri_data.md @@ -1,6 +1,7 @@ --- title: Correlation analysis of fMRI data -tags: [example, fmri, raw, freq, coherence] +category: example +tags: [fmri, raw, freq, coherence] --- # Correlation analysis of fMRI data diff --git a/example/crossfreq.md b/example/crossfreq.md index f9fe50771..1e1aff51e 100644 --- a/example/crossfreq.md +++ b/example/crossfreq.md @@ -1,6 +1,7 @@ --- title: Cross-frequency analysis -tags: [example, freq] +category: example +tags: [freq] --- # Cross-frequency analysis diff --git a/example/detect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md b/example/detect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md index cebf940bc..9527edde9 100644 --- a/example/detect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md +++ b/example/detect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md @@ -1,6 +1,7 @@ --- title: Detect the muscle activity in an EMG channel and use that as trial definition -tags: [example, trialfun, emg, preprocessing] +category: example +tags: [trialfun, emg, preprocessing] --- # Detect the muscle activity in an EMG channel and use that as trial definition diff --git a/example/determine_the_filter_characteristics.md b/example/determine_the_filter_characteristics.md index 6f14bf984..933b63c86 100644 --- a/example/determine_the_filter_characteristics.md +++ b/example/determine_the_filter_characteristics.md @@ -1,6 +1,7 @@ --- title: Determine the filter characteristics -tags: [example, preprocessing, filter] +category: example +tags: [preprocessing, filter] --- # Determine the filter characteristics diff --git a/example/difference_erf.md b/example/difference_erf.md index 22f434c68..ae982f23d 100644 --- a/example/difference_erf.md +++ b/example/difference_erf.md @@ -1,6 +1,7 @@ --- title: Localizing the sources underlying the difference in event-related fields -tags: [example, source, erf] +category: example +tags: [source, erf] --- # Localizing the sources underlying the difference in event-related fields diff --git a/example/dipolefit_somatosensory_erf.md b/example/dipolefit_somatosensory_erf.md index 3ab0a5bdb..9f30bb98b 100644 --- a/example/dipolefit_somatosensory_erf.md +++ b/example/dipolefit_somatosensory_erf.md @@ -1,6 +1,7 @@ --- title: Fit a dipole to the tactile ERF after mechanical stimulation -tags: [example, meg, timelock, source, dipole, fixme, meg-tactile] +category: example +tags: [meg, timelock, source, dipole, fixme, meg-tactile] redirect_from: - /example/fit_a_dipole_to_the_tactile_erf_after_mechanical_stimulation/ --- diff --git a/example/ecog_ny.md b/example/ecog_ny.md index 2b5624559..a9c3a36ce 100644 --- a/example/ecog_ny.md +++ b/example/ecog_ny.md @@ -1,6 +1,7 @@ --- title: Analysis of high-gamma band signals in human ECoG -tags: [example, ieeg, eeg, ecog, ecog-visual] +category: example +tags: [ieeg, eeg, ecog, ecog-visual] --- # Analysis of high-gamma band signals in human ECoG diff --git a/example/effects_of_tapering.md b/example/effects_of_tapering.md index 50484972e..1c456e8b9 100644 --- a/example/effects_of_tapering.md +++ b/example/effects_of_tapering.md @@ -1,6 +1,7 @@ --- title: Effects of tapering for power estimates -tags: [example, freq, simulation] +category: example +tags: [freq, simulation] redirect_from: - /example/effects_of_tapering_for_power_estimates_in_the_frequency_domain/ --- diff --git a/example/effectsize.md b/example/effectsize.md index bda26442d..fa2aed335 100644 --- a/example/effectsize.md +++ b/example/effectsize.md @@ -1,6 +1,7 @@ --- title: Computing and reporting the effect size -tags: [example, statistics, cluster, meg-language] +category: example +tags: [statistics, cluster, meg-language] --- # Computing and reporting the effect size diff --git a/example/electrodes2bem.md b/example/electrodes2bem.md index 7ac025f8f..65e6de7b7 100644 --- a/example/electrodes2bem.md +++ b/example/electrodes2bem.md @@ -1,6 +1,7 @@ --- title: Align EEG electrode positions to BEM headmodel -tags: [example, eeg, mri, source, headmodel] +category: example +tags: [eeg, mri, source, headmodel] redirect_from: - /example/align_eeg_electrode_positions_to_bem_headmodel/ --- diff --git a/example/entropy_analysis.md b/example/entropy_analysis.md index 08b862756..5ad96668f 100644 --- a/example/entropy_analysis.md +++ b/example/entropy_analysis.md @@ -1,6 +1,7 @@ --- title: Perform modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data -tags: [example, entropy] +category: example +tags: [entropy] --- # Perform modified Multiscale Entropy (mMSE) analysis on EEG/MEG/LFP data diff --git a/example/fem.md b/example/fem.md index 65d83f618..6d7b131ef 100644 --- a/example/fem.md +++ b/example/fem.md @@ -1,6 +1,7 @@ --- title: Compute EEG leadfields using a FEM headmodel -tags: [example, eeg, fem, leadfield, headmodel] +category: example +tags: [eeg, fem, leadfield, headmodel] --- # Compute EEG leadfields using a FEM headmodel diff --git a/example/fittemplate.md b/example/fittemplate.md index d8661fff5..02e3aac5f 100644 --- a/example/fittemplate.md +++ b/example/fittemplate.md @@ -1,6 +1,7 @@ --- title: How to create a head model if you do not have an individual MRI -tags: [example, source] +category: example +tags: [source] --- # How to create a head model if you do not have an individual MRI diff --git a/example/fixing_a_missing_sensor.md b/example/fixing_a_missing_sensor.md index 19c5a16f9..b283c79f9 100644 --- a/example/fixing_a_missing_sensor.md +++ b/example/fixing_a_missing_sensor.md @@ -1,6 +1,7 @@ --- title: Fixing a missing channel -tags: [example, meg, preprocessing, ctf, neighbours] +category: example +tags: [meg, preprocessing, ctf, neighbours] --- # Fixing a missing channel diff --git a/example/fooof.md b/example/fooof.md index 3fde17489..530005bd7 100644 --- a/example/fooof.md +++ b/example/fooof.md @@ -1,6 +1,7 @@ --- title: Fitting oscillations and one-over-F (FOOOF) -tags: [example, fooof] +category: example +tags: [fooof] --- # Fitting oscillations and one-over-F (FOOOF) diff --git a/example/ft_realtime_average.md b/example/ft_realtime_average.md index 2dd01f78c..bc25769d5 100644 --- a/example/ft_realtime_average.md +++ b/example/ft_realtime_average.md @@ -1,6 +1,7 @@ --- title: Example real-time average -tags: [example, realtime] +category: example +tags: [realtime] --- # Example real-time average diff --git a/example/ft_realtime_classification.md b/example/ft_realtime_classification.md index 138043ada..1d1407997 100644 --- a/example/ft_realtime_classification.md +++ b/example/ft_realtime_classification.md @@ -1,6 +1,7 @@ --- title: Example real-time classification -tags: [example, realtime] +category: example +tags: [realtime] --- # Example real-time classification diff --git a/example/ft_realtime_hilbert.md b/example/ft_realtime_hilbert.md index df0c88f2f..77d07c5c4 100644 --- a/example/ft_realtime_hilbert.md +++ b/example/ft_realtime_hilbert.md @@ -1,6 +1,7 @@ --- title: Realtime neurofeedback application based on Hilbert phase estimation -tags: [example, realtime] +category: example +tags: [realtime] --- # Realtime neurofeedback application based on Hilbert phase estimation diff --git a/example/ft_realtime_powerestimate.md b/example/ft_realtime_powerestimate.md index 02378fdb0..7ed5dc16a 100644 --- a/example/ft_realtime_powerestimate.md +++ b/example/ft_realtime_powerestimate.md @@ -1,6 +1,7 @@ --- title: Example real-time power estimate -tags: [example, realtime] +category: example +tags: [realtime] --- # Example real-time power estimate diff --git a/example/ft_realtime_selectiveaverage.md b/example/ft_realtime_selectiveaverage.md index 75106c606..a3e2ca89d 100644 --- a/example/ft_realtime_selectiveaverage.md +++ b/example/ft_realtime_selectiveaverage.md @@ -1,6 +1,7 @@ --- title: Example real-time selective average -tags: [example, realtime] +category: example +tags: [realtime] --- # Example real-time selective average diff --git a/example/ft_realtime_signalviewer.md b/example/ft_realtime_signalviewer.md index adef877df..be9e544df 100644 --- a/example/ft_realtime_signalviewer.md +++ b/example/ft_realtime_signalviewer.md @@ -1,6 +1,7 @@ --- title: Example real-time signal viewer -tags: [example, realtime] +category: example +tags: [realtime] --- # Example real-time signal viewer diff --git a/example/getting_started_with_reading_raw_eeg_or_meg_data.md b/example/getting_started_with_reading_raw_eeg_or_meg_data.md index 0c77d9023..49d71b114 100644 --- a/example/getting_started_with_reading_raw_eeg_or_meg_data.md +++ b/example/getting_started_with_reading_raw_eeg_or_meg_data.md @@ -1,6 +1,7 @@ --- title: Getting started with reading raw EEG or MEG data -tags: [example, eeg, meg, raw, preprocessing, trialdef] +category: example +tags: [eeg, meg, raw, preprocessing, trialdef] --- # Getting started with reading raw EEG or MEG data diff --git a/example/glm_timeseries.md b/example/glm_timeseries.md index 8e45a4e99..bb737b1cb 100644 --- a/example/glm_timeseries.md +++ b/example/glm_timeseries.md @@ -1,6 +1,7 @@ --- title: Using General Linear Modeling on time series data -tags: [example, glm, statistics, eeg-language] +category: example +tags: [glm, statistics, eeg-language] --- # Using General Linear Modeling on time series data diff --git a/example/glm_trials.md b/example/glm_trials.md index 6a0a460f8..859a0be18 100644 --- a/example/glm_trials.md +++ b/example/glm_trials.md @@ -1,6 +1,7 @@ --- title: Using General Linear Modeling over trials -tags: [example, glm, statistics, eeg-language] +category: example +tags: [glm, statistics, eeg-language] --- # Using General Linear Modeling over trials diff --git a/example/headmovement_meg.md b/example/headmovement_meg.md index 2f1cea479..7d81b2f71 100644 --- a/example/headmovement_meg.md +++ b/example/headmovement_meg.md @@ -1,6 +1,7 @@ --- title: How to incorporate head movements in MEG analysis -tags: [example, artifact, meg, glm, regression, confound] +category: example +tags: [artifact, meg, glm, regression, confound] redirect_from: - /example/how_to_incorporate_head_movements_in_meg_analysis/ --- diff --git a/example/ica_ecg.md b/example/ica_ecg.md index 8a97ce5a3..62edc3c2b 100644 --- a/example/ica_ecg.md +++ b/example/ica_ecg.md @@ -1,8 +1,9 @@ --- title: Independent component analysis (ICA) to remove ECG artifacts -tags: [example, artifact, preprocessing, ica, meg-removal] +category: example +tags: [artifact, preprocessing, ica, meg-removal] redirect_from: - - /example/use_independent_component_analysis_ica_to_remove_ecg_artifacts/ + - /example/use_independent_component_analysis_ica_to_remove_ecg_artifacts/ --- # Independent component analysis (ICA) to remove ECG artifacts diff --git a/example/ica_eog.md b/example/ica_eog.md index 44774e6d7..c4f6da7aa 100644 --- a/example/ica_eog.md +++ b/example/ica_eog.md @@ -1,8 +1,9 @@ --- title: Independent component analysis (ICA) to remove EOG artifacts -tags: [example, artifact, preprocessing, ica, meg-artifact] +category: example +tags: [artifact, preprocessing, ica, meg-artifact] redirect_from: - - /example/use_independent_component_analysis_ica_to_remove_eog_artifacts/ + - /example/use_independent_component_analysis_ica_to_remove_eog_artifacts/ --- # Independent component analysis (ICA) to remove EOG artifacts diff --git a/example/import_mne.md b/example/import_mne.md index 9f23b273b..96c7e2c72 100644 --- a/example/import_mne.md +++ b/example/import_mne.md @@ -1,6 +1,7 @@ --- title: How to import data from MNE-Python and FreeSurfer -tags: [example, mne, source] +category: example +tags: [mne, source] --- # How to import data from MNE-Python and FreeSurfer diff --git a/example/irasa.md b/example/irasa.md index ef8667360..d81d30fb2 100644 --- a/example/irasa.md +++ b/example/irasa.md @@ -1,6 +1,7 @@ --- title: Irregular Resampling Auto-Spectral Analysis (IRASA) -tags: [example, irasa] +category: example +tags: [irasa] --- # Irregular Resampling Auto-Spectral Analysis (IRASA) diff --git a/example/make_leadfields_using_different_headmodels.md b/example/make_leadfields_using_different_headmodels.md index 9bc0cc25a..63a2303a4 100644 --- a/example/make_leadfields_using_different_headmodels.md +++ b/example/make_leadfields_using_different_headmodels.md @@ -1,17 +1,18 @@ --- -title: Make leadfields using different headmodels -tags: [example, meg, headmodel, source] +title: Make MEG leadfields using different headmodels +category: example +tags: [meg, headmodel, source] --- -# Make leadfields using different headmodels +# Make MEG leadfields using different headmodels ## Introduction -These scripts demonstrate how to compute and compare some different MEG headmodels that are available in FieldTrip. +These scripts demonstrate how to compute and compare leadfields using some different MEG headmodels that are available in FieldTrip. -For all functions used, you can type 'help _function_' in MATLAB for more information. +For all functions used, you can type `help functionname` in MATLAB for more information. -The MEG dataset that is used in this demo is available from and is named Subject01.zip. +The MEG dataset Subject01.zip used in this demo is available from our [download server](https://download.fieldtriptoolbox.org/tutorial/). If you download this data into a folder named 'testdata', the directory should look like this: diff --git a/example/measuring_the_timing_delay_and_jitter_for_a_real-time_application.md b/example/measuring_the_timing_delay_and_jitter_for_a_real-time_application.md index 720fa4de7..b3dd879ef 100644 --- a/example/measuring_the_timing_delay_and_jitter_for_a_real-time_application.md +++ b/example/measuring_the_timing_delay_and_jitter_for_a_real-time_application.md @@ -1,6 +1,7 @@ --- title: Measuring the timing delay and jitter for a real-time application -tags: [example, realtime] +category: example +tags: [realtime] --- # Measuring the timing delay and jitter for a real-time application diff --git a/example/meg_eyelink.md b/example/meg_eyelink.md index a722382a1..556df2fb3 100644 --- a/example/meg_eyelink.md +++ b/example/meg_eyelink.md @@ -1,6 +1,7 @@ --- title: Combine MEG with Eyelink eyetracker data -tags: [example, artifact, preprocessing, eyelink, eog] +category: example +tags: [artifact, preprocessing, eyelink, eog] --- # Combine MEG with Eyelink eyetracker data diff --git a/example/megrealign.md b/example/megrealign.md index 3a918b6db..7cced833f 100644 --- a/example/megrealign.md +++ b/example/megrealign.md @@ -1,6 +1,7 @@ --- title: Interpolating data from the CTF151 to the CTF275 sensor array using megrealign -tags: [example, meg, ctf] +category: example +tags: [meg, ctf] --- # Interpolating data from the CTF151 to the CTF275 sensor array using megrealign diff --git a/example/neighbours.md b/example/neighbours.md index 875db16ee..fe6e70ef8 100644 --- a/example/neighbours.md +++ b/example/neighbours.md @@ -1,6 +1,7 @@ --- title: Defining electrodes as neighbours for cluster-level statistics -tags: [example, statistics, cluster, neighbours] +category: example +tags: [statistics, cluster, neighbours] --- # Defining electrodes as neighbours for cluster-level statistics diff --git a/example/nirs_fingertapping.md b/example/nirs_fingertapping.md index cd947dbec..917b96a44 100644 --- a/example/nirs_fingertapping.md +++ b/example/nirs_fingertapping.md @@ -1,6 +1,7 @@ --- title: Analyzing NIRS data recorded during unilateral finger- and foot-tapping -tags: [example, nirs, shimadzu] +category: example +tags: [nirs, shimadzu] --- # Analyzing NIRS data recorded during unilateral finger- and foot-tapping diff --git a/example/nirs_glm.md b/example/nirs_glm.md index f4c42b902..77ff58207 100644 --- a/example/nirs_glm.md +++ b/example/nirs_glm.md @@ -1,6 +1,7 @@ --- title: Using GLM to analyze NIRS timeseries data -tags: [example, nirs, glm, statistics] +category: example +tags: [nirs, glm, statistics] --- # Using GLM to analyze NIRS timeseries data diff --git a/example/nirs_layout.md b/example/nirs_layout.md index 0746c067e..896420bdd 100644 --- a/example/nirs_layout.md +++ b/example/nirs_layout.md @@ -1,6 +1,7 @@ --- title: Creating a layout for plotting NIRS optodes and channels -tags: [example, nirs, layout, plotting] +category: example +tags: [nirs, layout, plotting] --- # Creating a layout for plotting NIRS optodes and channels diff --git a/example/nirs_speech.md b/example/nirs_speech.md index d2430bf99..53493f0a3 100644 --- a/example/nirs_speech.md +++ b/example/nirs_speech.md @@ -1,6 +1,7 @@ --- title: Analyzing NIRS data recorded during listening to and repeating speech -tags: [example, nirs] +category: example +tags: [nirs] --- # Analyzing NIRS data recorded during listening to and repeating speech diff --git a/example/phase_reset.md b/example/phase_reset.md index 03d39d417..38540a646 100644 --- a/example/phase_reset.md +++ b/example/phase_reset.md @@ -1,6 +1,7 @@ --- title: Simulate an oscillatory signal with phase resetting -tags: [example, freq] +category: example +tags: [freq] --- # Simulate an oscillatory signal with phase resetting diff --git a/example/planar_orientation.md b/example/planar_orientation.md index 503ab9bc2..28f58f1fc 100644 --- a/example/planar_orientation.md +++ b/example/planar_orientation.md @@ -1,6 +1,7 @@ --- title: Find the orientation of planar gradiometers -tags: [example, neuromag, planar] +category: example +tags: [neuromag, planar] --- # Find the orientation of planar gradiometers diff --git a/example/plotting_source_surface.md b/example/plotting_source_surface.md index 7774d5ea5..abd75f6d4 100644 --- a/example/plotting_source_surface.md +++ b/example/plotting_source_surface.md @@ -1,8 +1,9 @@ --- title: Plotting the result of source reconstruction on a cortical mesh -tags: [example, plotting, source] +category: example +tags: [plotting, source] redirect_from: - - /example/plotting_the_result_of_source_reconstructing_on_a_cortical_mesh/ + - /example/plotting_the_result_of_source_reconstructing_on_a_cortical_mesh/ --- # Plotting the result of source reconstruction on a cortical mesh diff --git a/example/reproducescript.md b/example/reproducescript.md index 214ed889c..f82f1c3e1 100644 --- a/example/reproducescript.md +++ b/example/reproducescript.md @@ -1,6 +1,7 @@ --- title: Making your analysis pipeline reproducible using reproducescript -tags: [example, reproducescript, script] +category: example +tags: [reproducescript, script] --- # Making your analysis pipeline reproducible using reproducescript diff --git a/example/reproducescript_andersen.md b/example/reproducescript_andersen.md index 3d4b2c024..d17fe4bf0 100644 --- a/example/reproducescript_andersen.md +++ b/example/reproducescript_andersen.md @@ -1,6 +1,7 @@ --- title: Using reproducescript on a full study -tags: [example, reproducescript] +category: example +tags: [reproducescript] --- # Using reproducescript on a full study diff --git a/example/reproducescript_group.md b/example/reproducescript_group.md index b5d561cd8..8cce5fe8d 100644 --- a/example/reproducescript_group.md +++ b/example/reproducescript_group.md @@ -1,6 +1,7 @@ --- title: Using reproducescript for a group analysis -tags: [example, reproducescript] +category: example +tags: [reproducescript] --- # Using reproducescript for a group analysis diff --git a/example/rereference.md b/example/rereference.md index 8304d3c9a..873743cf2 100644 --- a/example/rereference.md +++ b/example/rereference.md @@ -1,6 +1,7 @@ --- title: Re-reference EEG and iEEG data -tags: [example, eeg, preprocessing, laplace, bipolar, montage] +category: example +tags: [eeg, preprocessing, laplace, bipolar, montage] --- # Re-reference EEG and iEEG data diff --git a/example/samplesize.md b/example/samplesize.md index 20b57be06..9ac2d7c96 100644 --- a/example/samplesize.md +++ b/example/samplesize.md @@ -1,6 +1,7 @@ --- title: Using simulations to estimate the sample size for cluster-based permutation test -tags: [example, statistics, cluster, neighbours, simulation] +category: example +tags: [statistics, cluster, neighbours, simulation] --- # Using simulations to estimate the sample size for cluster-based permutation test diff --git a/example/source_statistics.md b/example/source_statistics.md index c1761f512..687684055 100644 --- a/example/source_statistics.md +++ b/example/source_statistics.md @@ -1,6 +1,7 @@ --- title: Source statistics -tags: [example, meg, source, statistics] +category: example +tags: [meg, source, statistics] --- # Source statistics diff --git a/example/sourcemodel_aligned2mni.md b/example/sourcemodel_aligned2mni.md index dd832ba8a..40f9e9647 100644 --- a/example/sourcemodel_aligned2mni.md +++ b/example/sourcemodel_aligned2mni.md @@ -1,6 +1,7 @@ --- title: Create MNI-aligned grids in individual head-space -tags: [example, meg, mri, headmodel, source] +category: example +tags: [meg, mri, headmodel, source] redirect_from: - /example/create_single-subject_grids_in_individual_head_space_that_are_all_aligned_in_mni_space/ --- diff --git a/example/sphere_fitting.md b/example/sphere_fitting.md index ec5d6d4ab..ea58a030c 100644 --- a/example/sphere_fitting.md +++ b/example/sphere_fitting.md @@ -1,6 +1,7 @@ --- title: Fitting a template MRI to the MEG Polhemus head shape -tags: [example, headmodel, meg] +category: example +tags: [headmodel, meg] redirect_from: - /example/sphere_fitting_and_scaling_of_the_template_colin_27_mri_to_the_meg_polhemus_headshape/ --- diff --git a/example/ssvep.md b/example/ssvep.md index 0542441ed..f32a58d5a 100644 --- a/example/ssvep.md +++ b/example/ssvep.md @@ -1,6 +1,7 @@ --- title: Analyze Steady-State Visual Evoked Potentials (SSVEPs) -tags: [example, freq] +category: example +tags: [freq] --- # Analyze Steady-State Visual Evoked Potentials (SSVEPs) diff --git a/example/stratify.md b/example/stratify.md index 120876469..0946ff576 100644 --- a/example/stratify.md +++ b/example/stratify.md @@ -1,6 +1,7 @@ --- title: Stratify the distribution of one variable that differs in two conditions -tags: [example, statistics] +category: example +tags: [statistics] --- # Stratify the distribution of one variable that differs in two conditions diff --git a/example/symmetry.md b/example/symmetry.md index fc918771e..3f6fc0aa7 100644 --- a/example/symmetry.md +++ b/example/symmetry.md @@ -1,6 +1,7 @@ --- title: Symmetric dipole pairs for beamforming -tags: [example, source, symmetry] +category: example +tags: [source, symmetry] --- # Symmetric dipole pairs for beamforming diff --git a/example/testing_bem_created_leadfields.md b/example/testing_bem_created_leadfields.md index acbbcbb25..a82dd6ad7 100644 --- a/example/testing_bem_created_leadfields.md +++ b/example/testing_bem_created_leadfields.md @@ -1,6 +1,7 @@ --- title: Testing BEM created EEG lead fields -tags: [example, eeg, mri, headmodel, source, simulation] +category: example +tags: [eeg, mri, headmodel, source, simulation] --- # Testing BEM created EEG lead fields diff --git a/example/threshold_free_cluster_enhancement.md b/example/threshold_free_cluster_enhancement.md index 778822cfc..425eb109d 100644 --- a/example/threshold_free_cluster_enhancement.md +++ b/example/threshold_free_cluster_enhancement.md @@ -1,6 +1,7 @@ --- title: Using threshold-free cluster enhancement for cluster statistics -tags: [example, statistics] +category: example +tags: [statistics] --- # Using threshold-free cluster enhancement for cluster statistics diff --git a/example/trialfun.md b/example/trialfun.md index fd1c39d71..f842af398 100644 --- a/example/trialfun.md +++ b/example/trialfun.md @@ -1,8 +1,9 @@ --- title: Making your own trialfun for conditional trial definition -tags: [example, raw, preprocessing, trialfun, trialdef] +category: example +tags: [raw, preprocessing, trialfun, trialdef] redirect_from: -- /example/making_your_own_trialfun_for_conditional_trial_definition/ + - /example/making_your_own_trialfun_for_conditional_trial_definition/ --- # Making your own trialfun for conditional trial definition diff --git a/example/use_denoising_source_separation_dss_to_remove_ecg_artifacts.md b/example/use_denoising_source_separation_dss_to_remove_ecg_artifacts.md index 89a80fda3..6b3e56923 100644 --- a/example/use_denoising_source_separation_dss_to_remove_ecg_artifacts.md +++ b/example/use_denoising_source_separation_dss_to_remove_ecg_artifacts.md @@ -1,6 +1,7 @@ --- title: Use denoising source separation (DSS) to remove ECG artifacts -tags: [example, artifact, preprocessing, ica, meg-removal] +category: example +tags: [artifact, preprocessing, ica, meg-removal] --- # Use denoising source separation (DSS) to remove ECG artifacts diff --git a/example/use_simulated_erps_to_explore_cluster_statistics.md b/example/use_simulated_erps_to_explore_cluster_statistics.md index ac3476daa..c7c1efe8e 100644 --- a/example/use_simulated_erps_to_explore_cluster_statistics.md +++ b/example/use_simulated_erps_to_explore_cluster_statistics.md @@ -1,6 +1,7 @@ --- title: Use simulated ERPs to explore cluster statistics -tags: [example, statistics, cluster, simulation] +category: example +tags: [statistics, cluster, simulation] --- # Use simulated ERPs to explore cluster statistics diff --git a/example/use_your_own_forward_leadfield_model_in_an_inverse_beamformer_computation.md b/example/use_your_own_forward_leadfield_model_in_an_inverse_beamformer_computation.md index 88d1fdd5e..6409e128d 100644 --- a/example/use_your_own_forward_leadfield_model_in_an_inverse_beamformer_computation.md +++ b/example/use_your_own_forward_leadfield_model_in_an_inverse_beamformer_computation.md @@ -1,6 +1,7 @@ --- title: Use your own forward leadfield model in an inverse beamformer computation -tags: [example, eeg, source] +category: example +tags: [eeg, source] --- # Use your own forward leadfield model in an inverse beamformer computation diff --git a/example/video_eeg.md b/example/video_eeg.md index b633d6940..37e833b82 100644 --- a/example/video_eeg.md +++ b/example/video_eeg.md @@ -1,6 +1,7 @@ --- title: Making a synchronous movie of EEG or NIRS combined with video recordings -tags: [example, video, eeg, nirs, plotting] +category: example +tags: [video, eeg, nirs, plotting] --- # Making a synchronous movie of EEG or NIRS combined with video recordings diff --git a/example/writing_simulated_data_to_a_ctf_dataset.md b/example/writing_simulated_data_to_a_ctf_dataset.md index 75dccaaf1..032129cbd 100644 --- a/example/writing_simulated_data_to_a_ctf_dataset.md +++ b/example/writing_simulated_data_to_a_ctf_dataset.md @@ -1,6 +1,7 @@ --- title: Can I create an artificial CTF dataset using MATLAB? -tags: [example, dataformat, ctf, meg] +category: example +tags: [dataformat, ctf, meg] --- {% include markup/red %} diff --git a/faq/acpc.md b/faq/acpc.md index 7d1abbb7e..125c96843 100644 --- a/faq/acpc.md +++ b/faq/acpc.md @@ -1,6 +1,7 @@ --- title: What is the difference between the ACPC, MNI, SPM and TAL coordinate systems? -tags: [faq, mri, coordinate] +category: faq +tags: [mri, coordinate] --- # What is the difference between the ACPC, MNI, SPM and TAL coordinate systems? diff --git a/faq/anterior_commissure.md b/faq/anterior_commissure.md index 3295e8751..e51eabaa7 100644 --- a/faq/anterior_commissure.md +++ b/faq/anterior_commissure.md @@ -1,6 +1,7 @@ --- title: Where is the anterior commissure? -tags: [faq, source, fiducial] +category: faq +tags: [source, fiducial] --- # Where is the anterior commissure? diff --git a/faq/append_files.md b/faq/append_files.md index 2d8c0757d..103a78d9d 100644 --- a/faq/append_files.md +++ b/faq/append_files.md @@ -1,6 +1,7 @@ --- title: How can I append the files of two separate recordings? -tags: [faq, dataformat, preprocessing] +category: faq +tags: [dataformat, preprocessing] --- # How can I append the files of two separate recordings? diff --git a/faq/audiovideo.md b/faq/audiovideo.md index f81fb6f44..0ffb349b0 100644 --- a/faq/audiovideo.md +++ b/faq/audiovideo.md @@ -1,6 +1,7 @@ --- title: How can I play back EEG/MEG and synchronous audio or video? -tags: [faq, audio, video] +category: faq +tags: [audio, video] --- # How can I play back EEG/MEG and synchronous audio or video? diff --git a/faq/bids_coordsystem.md b/faq/bids_coordsystem.md index 89f5e8cde..6ddb13fcb 100644 --- a/faq/bids_coordsystem.md +++ b/faq/bids_coordsystem.md @@ -1,6 +1,7 @@ --- title: How should I specify the coordinate systems in a BIDS dataset? -tags: [faq, bids, sharing] +category: faq +tags: [bids, sharing] --- # How should I specify the coordinate systems in a BIDS dataset? diff --git a/faq/can_i_do_combined_eeg_and_meg_source_reconstruction.md b/faq/can_i_do_combined_eeg_and_meg_source_reconstruction.md index e8ff0ce5d..11de1e7b2 100644 --- a/faq/can_i_do_combined_eeg_and_meg_source_reconstruction.md +++ b/faq/can_i_do_combined_eeg_and_meg_source_reconstruction.md @@ -1,6 +1,7 @@ --- title: Can I do combined EEG and MEG source reconstruction? -tags: [faq, eeg, meg, headmodel, source] +category: faq +tags: [eeg, meg, headmodel, source] --- # Can I do combined EEG and MEG source reconstruction? diff --git a/faq/can_i_get_an_offline_version_of_the_wiki_documentation.md b/faq/can_i_get_an_offline_version_of_the_wiki_documentation.md index 346bf9408..8514d6e7b 100644 --- a/faq/can_i_get_an_offline_version_of_the_wiki_documentation.md +++ b/faq/can_i_get_an_offline_version_of_the_wiki_documentation.md @@ -1,6 +1,7 @@ --- title: Can I get an offline version of the documentation on the website? -tags: [faq, documentation] +category: faq +tags: [documentation] --- # Can I get an offline version of the documentation on the website? diff --git a/faq/can_i_organize_my_own_workshop.md b/faq/can_i_organize_my_own_workshop.md index 23b892096..b57ce1c8e 100644 --- a/faq/can_i_organize_my_own_workshop.md +++ b/faq/can_i_organize_my_own_workshop.md @@ -1,6 +1,7 @@ --- title: Can I organize my own FieldTrip workshop? -tags: [faq, workshop] +category: faq +tags: [workshop] --- # Can I organize my own FieldTrip workshop? diff --git a/faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path.md b/faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path.md index ecf3105ba..8d72932a8 100644 --- a/faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path.md +++ b/faq/can_i_prevent_external_toolboxes_from_being_added_to_my_matlab_path.md @@ -1,6 +1,7 @@ --- title: Can I prevent "external" toolboxes from being added to my MATLAB path? -tags: [faq, matlab, toolbox, path] +category: faq +tags: [matlab, toolbox, path] --- # Can I prevent "external" toolboxes from being added to my MATLAB path? diff --git a/faq/can_i_restrict_the_source_reconstruction_to_the_grey_matter.md b/faq/can_i_restrict_the_source_reconstruction_to_the_grey_matter.md index aac7c2da6..75308b474 100644 --- a/faq/can_i_restrict_the_source_reconstruction_to_the_grey_matter.md +++ b/faq/can_i_restrict_the_source_reconstruction_to_the_grey_matter.md @@ -1,6 +1,7 @@ --- title: Can I restrict the source reconstruction to the grey matter? -tags: [faq, source, mri, headmodel] +category: faq +tags: [source, mri, headmodel] --- # Can I restrict the source reconstruction to the grey matter? diff --git a/faq/can_i_use_octave_instead_of_matlab.md b/faq/can_i_use_octave_instead_of_matlab.md index 4a7673213..71441d9ce 100644 --- a/faq/can_i_use_octave_instead_of_matlab.md +++ b/faq/can_i_use_octave_instead_of_matlab.md @@ -1,6 +1,7 @@ --- title: Can I use Octave instead of MATLAB? -tags: [faq, octave] +category: faq +tags: [octave] --- # Can I use Octave instead of MATLAB? diff --git a/faq/can_i_use_the_fieldtrip_logo_on_my_poster.md b/faq/can_i_use_the_fieldtrip_logo_on_my_poster.md index 00e70b874..09e370d73 100644 --- a/faq/can_i_use_the_fieldtrip_logo_on_my_poster.md +++ b/faq/can_i_use_the_fieldtrip_logo_on_my_poster.md @@ -1,6 +1,7 @@ --- title: Can I use the FieldTrip logo on my poster? -tags: [faq, logo] +category: faq +tags: [logo] --- # Can I use the FieldTrip logo on my poster or elsewhere? diff --git a/faq/capmapping.md b/faq/capmapping.md index 559e2d7f5..10a8345f6 100644 --- a/faq/capmapping.md +++ b/faq/capmapping.md @@ -1,6 +1,7 @@ --- title: Can I compare EEG channels between different electrode caps? -tags: [faq, eeg, electrode] +category: faq +tags: [eeg, electrode] --- # Can I compare EEG channels between different electrode caps? diff --git a/faq/checklist.md b/faq/checklist.md index 05957a69a..d68ddf828 100644 --- a/faq/checklist.md +++ b/faq/checklist.md @@ -1,6 +1,7 @@ --- title: Which methodological details should I report in an EEG/MEG manuscript? -tags: [faq, sharing] +category: faq +tags: [sharing] --- # Which methodological details should I report in an EEG/MEG manuscript? diff --git a/faq/coilaccuracy.md b/faq/coilaccuracy.md index b1baf12c3..d8373ba7c 100644 --- a/faq/coilaccuracy.md +++ b/faq/coilaccuracy.md @@ -1,6 +1,7 @@ --- title: What does the coilaccuracy parameter do? -tags: [faq, meg] +category: faq +tags: [meg] --- # What does the coilaccuracy parameter do? diff --git a/faq/colormap.md b/faq/colormap.md index b4be52a3a..cc360a105 100644 --- a/faq/colormap.md +++ b/faq/colormap.md @@ -1,6 +1,7 @@ --- title: Which colormaps are supported? -tags: [faq, plotting] +category: faq +tags: [plotting] --- # Which colormaps are supported? diff --git a/faq/compile.md b/faq/compile.md index 2ca789b36..839d74509 100644 --- a/faq/compile.md +++ b/faq/compile.md @@ -1,6 +1,7 @@ --- title: How can I compile the mex files and command-line executable? -tags: [faq, mex, compile] +category: faq +tags: [mex, compile] --- # How can I compile the mex files and command-line executable? diff --git a/faq/compiled.md b/faq/compiled.md index a937d8bec..9ecf50dfe 100644 --- a/faq/compiled.md +++ b/faq/compiled.md @@ -1,6 +1,7 @@ --- title: Can I use FieldTrip without MATLAB license? -tags: [faq, matlab, mex, compile] +category: faq +tags: [matlab, mex, compile] --- # Can I use FieldTrip without MATLAB license? diff --git a/faq/continuous.md b/faq/continuous.md index 3452bc0ad..053354ec0 100644 --- a/faq/continuous.md +++ b/faq/continuous.md @@ -1,6 +1,7 @@ --- title: Why should I set continuous to yes for CTF data? -tags: [faq, ctf, preprocessing, continuous] +category: faq +tags: [ctf, preprocessing, continuous] authors: [Konstantinos Tsilimparis, Robert Oostenveld] --- diff --git a/faq/coordsys.md b/faq/coordsys.md index c9640318a..2b9a91e26 100644 --- a/faq/coordsys.md +++ b/faq/coordsys.md @@ -1,8 +1,9 @@ --- title: How are the different head and MRI coordinate systems defined? -tags: [faq, headmodel, mri, source, fiducial, coordinate] +category: faq +tags: [headmodel, mri, source, fiducial, coordinate] redirect_from: - - /faq/how_are_the_different_head_and_mri_coordinate_systems_defined/ + - /faq/how_are_the_different_head_and_mri_coordinate_systems_defined/ --- # How are the different head and MRI coordinate systems defined? diff --git a/faq/data_sharing.md b/faq/data_sharing.md index 0eac5ccad..2da78f530 100644 --- a/faq/data_sharing.md +++ b/faq/data_sharing.md @@ -1,6 +1,7 @@ --- title: How can I share my MEG data? -tags: [faq, dataset, sharing] +category: faq +tags: [dataset, sharing] --- # How can I share my MEG data? @@ -61,4 +62,4 @@ There is not per se a perfect format for sharing the dataset, so you have to **b BIDS is an active project; the [specification](https://bids-specification.readthedocs.io/en/stable/) is still expanding through so-called BIDS extension proposals (BEPs). Also tools to create and work with BIDS datasets are under active development. FieldTrip includes the **[data2bids](/reference/data2bids)** function to help you organize your data in BIDS. Under the examples section you can find multiple example scripts: -{% include seealso tag1="example" tag2="bids" %} +{% include seealso category="example" tag1="bids" %} diff --git a/faq/dataformat.md b/faq/dataformat.md index a95a56ee6..b577713bf 100644 --- a/faq/dataformat.md +++ b/faq/dataformat.md @@ -1,6 +1,7 @@ --- title: What dataformats are supported? -tags: [faq, dataformat, preprocessing, raw] +category: faq +tags: [dataformat, preprocessing, raw] --- # What dataformats are supported? @@ -88,4 +89,4 @@ The following surface and volume mesh formats are supported by **[ft_read_headsh ## See also -{% include seealso tag1="faq" tag2="dataformat" %} +{% include seealso category="faq" tag1="dataformat" %} diff --git a/faq/datasets.md b/faq/datasets.md index b9a507410..86eb17975 100644 --- a/faq/datasets.md +++ b/faq/datasets.md @@ -1,8 +1,9 @@ --- title: Which datasets are used in the documentation and where are they used? -tags: [faq, tutorial, dataset, meg-language, meg-artifact, meg-removal, meg-visuomotor151, meg-visuomotor151-k, meg-attention, meg-tactile, meg-audodd, meg-epilepsy, hcp-motort, opm-mediannerve, mmfaces, eeg-audodd, eeg-language, eeg-affective, eeg-sedation, eeg-tms, ecog-visual, ecog-protocol, nirs-singlechannel, nirs-multichannel, spike-attention, spike-placefield, neurotycho] +category: faq +tags: [tutorial, dataset, meg-language, meg-artifact, meg-removal, meg-visuomotor151, meg-visuomotor151-k, meg-attention, meg-tactile, meg-audodd, meg-epilepsy, hcp-motort, opm-mediannerve, mmfaces, eeg-audodd, eeg-language, eeg-affective, eeg-sedation, eeg-tms, ecog-visual, ecog-protocol, nirs-singlechannel, nirs-multichannel, spike-attention, spike-placefield, neurotycho] redirect_from: -- /faq/datasets + - /faq/datasets --- # Which datasets are used in the documentation and where are they used? diff --git a/faq/discontinuous_neuralynx.md b/faq/discontinuous_neuralynx.md index 6abf195b9..f874c6fab 100644 --- a/faq/discontinuous_neuralynx.md +++ b/faq/discontinuous_neuralynx.md @@ -1,6 +1,7 @@ --- title: How can I deal with a discontinuous Neuralynx LFP recording? -tags: [faq, neuralynx, corrupt, preprocessing] +category: faq +tags: [neuralynx, corrupt, preprocessing] --- # How can I deal with a discontinuous Neuralynx LFP recording? diff --git a/faq/does_the_fieldtrip_realtime_buffer_only_work_with_matlab.md b/faq/does_the_fieldtrip_realtime_buffer_only_work_with_matlab.md index 89f29d4b8..01b94ae47 100644 --- a/faq/does_the_fieldtrip_realtime_buffer_only_work_with_matlab.md +++ b/faq/does_the_fieldtrip_realtime_buffer_only_work_with_matlab.md @@ -1,6 +1,7 @@ --- title: Does the FieldTrip realtime buffer only work with MATLAB? -tags: [faq, realtime] +category: faq +tags: [realtime] --- # Does the FieldTrip realtime buffer only work with MATLAB? diff --git a/faq/evoked_vs_induced.md b/faq/evoked_vs_induced.md index 329657889..c7297033b 100644 --- a/faq/evoked_vs_induced.md +++ b/faq/evoked_vs_induced.md @@ -1,6 +1,7 @@ --- title: Does it make sense to subtract the ERP prior to time frequency analysis, to distinguish evoked from induced power? -tags: [faq, freq] +category: faq +tags: [freq] --- # Does it make sense to subtract the ERP prior to time frequency analysis, to distinguish evoked from induced power? diff --git a/faq/external.md b/faq/external.md index 89a266756..847157306 100644 --- a/faq/external.md +++ b/faq/external.md @@ -1,6 +1,7 @@ --- title: Which external toolboxes are used by FieldTrip? -tags: [faq, matlab, toolbox] +category: faq +tags: [matlab, toolbox] --- # Which external toolboxes are used by FieldTrip? diff --git a/faq/fiducial.md b/faq/fiducial.md index e8ccef5cf..c46aabc41 100644 --- a/faq/fiducial.md +++ b/faq/fiducial.md @@ -1,6 +1,7 @@ --- title: How should I specify the fiducials for electrode realignment? -tags: [faq, electrode, eeg, fiducial] +category: faq +tags: [electrode, eeg, fiducial] --- # How should I specify the fiducials for electrode realignment? diff --git a/faq/headcast.md b/faq/headcast.md index e42d47fc2..11965b499 100644 --- a/faq/headcast.md +++ b/faq/headcast.md @@ -1,6 +1,7 @@ --- title: What material is used for the flexible MEG headcasts? -tags: [faq, meg] +category: faq +tags: [meg] --- # What material is used for the flexible MEG headcasts? diff --git a/faq/homogenous.md b/faq/homogenous.md index 338c4e024..ef30daf18 100644 --- a/faq/homogenous.md +++ b/faq/homogenous.md @@ -1,6 +1,7 @@ --- title: How do homogenous coordinate transformation matrices work? -tags: [faq, coordinate] +category: faq +tags: [coordinate] --- # How do homogenous coordinate transformation matrices work? Or how do I get the coordinates for a specific voxel? diff --git a/faq/how_are_electrodes_magnetometers_or_gradiometers_described.md b/faq/how_are_electrodes_magnetometers_or_gradiometers_described.md index 117f058d2..d3bf7b461 100644 --- a/faq/how_are_electrodes_magnetometers_or_gradiometers_described.md +++ b/faq/how_are_electrodes_magnetometers_or_gradiometers_described.md @@ -1,6 +1,7 @@ --- title: How are electrodes, magnetometers or gradiometers described? -tags: [faq, electrode, eeg, meg, fiducial, layout] +category: faq +tags: [electrode, eeg, meg, fiducial, layout] --- # How are electrodes, magnetometers or gradiometers described? diff --git a/faq/how_are_the_lpa_and_rpa_points_defined.md b/faq/how_are_the_lpa_and_rpa_points_defined.md index 684e19df0..003eb55f1 100644 --- a/faq/how_are_the_lpa_and_rpa_points_defined.md +++ b/faq/how_are_the_lpa_and_rpa_points_defined.md @@ -1,6 +1,7 @@ --- title: How are the Left and Right Pre-Auricular (LPA and RPA) points defined? -tags: [faq, fiducial, mri, ctf, source, coordinate] +category: faq +tags: [fiducial, mri, ctf, source, coordinate] --- # How are the Left and Right Pre-Auricular (LPA and RPA) points defined? diff --git a/faq/how_are_the_various_data_structures_defined.md b/faq/how_are_the_various_data_structures_defined.md index e3387a861..a8038f66e 100644 --- a/faq/how_are_the_various_data_structures_defined.md +++ b/faq/how_are_the_various_data_structures_defined.md @@ -1,6 +1,7 @@ --- title: How are the various MATLAB data structures defined? -tags: [faq, datatype, dataformat] +category: faq +tags: [datatype, dataformat] --- # How are the various MATLAB data structures defined? diff --git a/faq/how_can_i_anonymize_a_brainvision_dataset.md b/faq/how_can_i_anonymize_a_brainvision_dataset.md index 93a6cc600..ad5d71772 100644 --- a/faq/how_can_i_anonymize_a_brainvision_dataset.md +++ b/faq/how_can_i_anonymize_a_brainvision_dataset.md @@ -1,6 +1,7 @@ --- title: How can I anonymize or deidentify a BrainVision dataset? -tags: [faq, brainvision, raw, anonymize, sharing] +category: faq +tags: [brainvision, raw, anonymize, sharing] --- # How can I anonymize or deidentify a BrainVision dataset? diff --git a/faq/how_can_i_anonymize_a_ctf_dataset.md b/faq/how_can_i_anonymize_a_ctf_dataset.md index 991350efb..35ecd3000 100644 --- a/faq/how_can_i_anonymize_a_ctf_dataset.md +++ b/faq/how_can_i_anonymize_a_ctf_dataset.md @@ -1,6 +1,7 @@ --- title: How can I anonymize or deidentify a CTF dataset? -tags: [faq, ctf, raw, anonymize, sharing] +category: faq +tags: [ctf, raw, anonymize, sharing] --- # How can I anonymize or deidentify a CTF dataset? diff --git a/faq/how_can_i_anonymize_an_anatomical_mri.md b/faq/how_can_i_anonymize_an_anatomical_mri.md index b3caa559b..d6e6700a8 100644 --- a/faq/how_can_i_anonymize_an_anatomical_mri.md +++ b/faq/how_can_i_anonymize_an_anatomical_mri.md @@ -1,6 +1,7 @@ --- title: How can I anonymize or deidentify an anatomical MRI? -tags: [faq, mri, anonymize, sharing] +category: faq +tags: [mri, anonymize, sharing] --- # How can I anonymize or deidentify an anatomical MRI? diff --git a/faq/how_can_i_anonymize_dicom_files.md b/faq/how_can_i_anonymize_dicom_files.md index f1478d4b8..3ecebd025 100644 --- a/faq/how_can_i_anonymize_dicom_files.md +++ b/faq/how_can_i_anonymize_dicom_files.md @@ -1,6 +1,7 @@ --- title: How can I anonymize or deidentify DICOM files? -tags: [faq, mri, anonymize, sharing] +category: faq +tags: [mri, anonymize, sharing] --- # How can I anonymize or deidentify DICOM files? diff --git a/faq/how_can_i_anonymize_fieldtrip_data.md b/faq/how_can_i_anonymize_fieldtrip_data.md index 6b1eec222..a36a672b4 100644 --- a/faq/how_can_i_anonymize_fieldtrip_data.md +++ b/faq/how_can_i_anonymize_fieldtrip_data.md @@ -1,6 +1,7 @@ --- title: How can I anonymize data processed in FieldTrip? -tags: [faq, sharing, anonymize] +category: faq +tags: [sharing, anonymize] --- # How can I anonymize data processed in FieldTrip? diff --git a/faq/how_can_i_change_the_head_localization_in_a_ctf_dataset.md b/faq/how_can_i_change_the_head_localization_in_a_ctf_dataset.md index f24770b6d..8c2d23adf 100644 --- a/faq/how_can_i_change_the_head_localization_in_a_ctf_dataset.md +++ b/faq/how_can_i_change_the_head_localization_in_a_ctf_dataset.md @@ -1,6 +1,7 @@ --- title: How can I change the head localization in a CTF dataset? -tags: [faq, ctf] +category: faq +tags: [ctf] --- # How can I change the head localization in a CTF dataset? diff --git a/faq/how_can_i_check_whether_the_grid_that_i_have_is_aligned_to_the_segmented_volume_and_to_the_sensor_gradiometer.md b/faq/how_can_i_check_whether_the_grid_that_i_have_is_aligned_to_the_segmented_volume_and_to_the_sensor_gradiometer.md index f5776f788..5160a7614 100644 --- a/faq/how_can_i_check_whether_the_grid_that_i_have_is_aligned_to_the_segmented_volume_and_to_the_sensor_gradiometer.md +++ b/faq/how_can_i_check_whether_the_grid_that_i_have_is_aligned_to_the_segmented_volume_and_to_the_sensor_gradiometer.md @@ -1,6 +1,7 @@ --- title: How can I check whether the grid that I have is aligned to the segmented volume and to the sensor gradiometer? -tags: [faq, source, headmodel, seg] +category: faq +tags: [source, headmodel, seg] --- # How can I check whether the grid that I have is aligned to the segmented volume and to the sensor gradiometer? diff --git a/faq/how_can_i_compile_the_mex_files_on_64_bit_windows.md b/faq/how_can_i_compile_the_mex_files_on_64_bit_windows.md index 9aaed11c2..46ac93839 100644 --- a/faq/how_can_i_compile_the_mex_files_on_64_bit_windows.md +++ b/faq/how_can_i_compile_the_mex_files_on_64_bit_windows.md @@ -1,6 +1,7 @@ --- title: How can I compile the mex files on 64-bit Windows? -tags: [faq, mex, matlab] +category: faq +tags: [mex, matlab] --- # How can I compile the mex files on 64-bit Windows? diff --git a/faq/how_can_i_compile_the_mex_files_on_os_x.md b/faq/how_can_i_compile_the_mex_files_on_os_x.md index 99c495d67..7c71002af 100644 --- a/faq/how_can_i_compile_the_mex_files_on_os_x.md +++ b/faq/how_can_i_compile_the_mex_files_on_os_x.md @@ -1,6 +1,7 @@ --- title: How can I compile the mex files on macOS? -tags: [faq, mex] +category: faq +tags: [mex] --- # How can I compile the mex files on macOS? diff --git a/faq/how_can_i_consistently_represent_artifacts_in_my_data.md b/faq/how_can_i_consistently_represent_artifacts_in_my_data.md index 0354e6ab9..6b38d7683 100644 --- a/faq/how_can_i_consistently_represent_artifacts_in_my_data.md +++ b/faq/how_can_i_consistently_represent_artifacts_in_my_data.md @@ -1,6 +1,7 @@ --- title: How can I consistently represent artifacts in my data? -tags: [faq, preprocessing, artifact] +category: faq +tags: [preprocessing, artifact] --- # How can I consistently represent artifacts in my data? diff --git a/faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format.md b/faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format.md index bcaad7c1b..b0f4bc665 100644 --- a/faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format.md +++ b/faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format.md @@ -1,6 +1,7 @@ --- title: How can I convert an anatomical MRI from DICOM into CTF format? -tags: [faq, mri, meg, ctf, dataformat, coordinate] +category: faq +tags: [mri, meg, ctf, dataformat, coordinate] --- # How can I convert an anatomical MRI from DICOM into CTF format? diff --git a/faq/how_can_i_convert_one_dataformat_into_an_other.md b/faq/how_can_i_convert_one_dataformat_into_an_other.md index b2d964387..ecc029d23 100644 --- a/faq/how_can_i_convert_one_dataformat_into_an_other.md +++ b/faq/how_can_i_convert_one_dataformat_into_an_other.md @@ -1,6 +1,7 @@ --- title: How can I convert one dataformat into an other? -tags: [faq, dataformat, preprocessing] +category: faq +tags: [dataformat, preprocessing] --- # How can I convert one dataformat into an other? diff --git a/faq/how_can_i_debug_my_analysis_script_if_a_fieldtrip_function_gives_an_error.md b/faq/how_can_i_debug_my_analysis_script_if_a_fieldtrip_function_gives_an_error.md index fe74e0274..32b5edfc7 100644 --- a/faq/how_can_i_debug_my_analysis_script_if_a_fieldtrip_function_gives_an_error.md +++ b/faq/how_can_i_debug_my_analysis_script_if_a_fieldtrip_function_gives_an_error.md @@ -1,6 +1,7 @@ --- title: How can I debug my analysis script if a FieldTrip function gives an error? -tags: [faq, debug] +category: faq +tags: [debug] --- # How can I debug my analysis script if a FieldTrip function gives an error? diff --git a/faq/how_can_i_define_neighbouring_sensors.md b/faq/how_can_i_define_neighbouring_sensors.md index c74bd0642..49efae746 100644 --- a/faq/how_can_i_define_neighbouring_sensors.md +++ b/faq/how_can_i_define_neighbouring_sensors.md @@ -1,6 +1,7 @@ --- title: How can I define neighbouring sensors? -tags: [faq, statistics, cluster, plotting] +category: faq +tags: [statistics, cluster, plotting] redirect_from: - /faq/how_can_i_define_my_own_neighbourhood_template/ --- diff --git a/faq/how_can_i_determine_the_anatomical_label_of_a_source.md b/faq/how_can_i_determine_the_anatomical_label_of_a_source.md index 04124f1ca..2f31caaf1 100644 --- a/faq/how_can_i_determine_the_anatomical_label_of_a_source.md +++ b/faq/how_can_i_determine_the_anatomical_label_of_a_source.md @@ -1,6 +1,7 @@ --- title: How can I determine the anatomical label of a source or electrode? -tags: [faq, source] +category: faq +tags: [source] --- # How can I determine the anatomical label of a source or electrode? diff --git a/faq/how_can_i_determine_the_onset_of_an_effect.md b/faq/how_can_i_determine_the_onset_of_an_effect.md index e49c04765..3808cd170 100644 --- a/faq/how_can_i_determine_the_onset_of_an_effect.md +++ b/faq/how_can_i_determine_the_onset_of_an_effect.md @@ -1,6 +1,7 @@ --- title: How can I determine the onset of an effect? -tags: [faq, statistics] +category: faq +tags: [statistics] --- # How can I determine the onset of an effect? diff --git a/faq/how_can_i_distribute_a_batch_of_jobs.md b/faq/how_can_i_distribute_a_batch_of_jobs.md index 49f143034..02fc865bf 100644 --- a/faq/how_can_i_distribute_a_batch_of_jobs.md +++ b/faq/how_can_i_distribute_a_batch_of_jobs.md @@ -1,6 +1,7 @@ --- title: How can I distribute a batch of jobs? -tags: [faq, distcomp] +category: faq +tags: [distcomp] --- # How can I distribute a batch of jobs? diff --git a/faq/how_can_i_do_time-frequency_analysis_on_continuous_data.md b/faq/how_can_i_do_time-frequency_analysis_on_continuous_data.md index b8262d5c3..da76332ba 100644 --- a/faq/how_can_i_do_time-frequency_analysis_on_continuous_data.md +++ b/faq/how_can_i_do_time-frequency_analysis_on_continuous_data.md @@ -1,6 +1,7 @@ --- title: How can I do time-frequency analysis on continuous data? -tags: [faq, continuous, freq] +category: faq +tags: [continuous, freq] --- # How can I do time-frequency analysis on continuous data? diff --git a/faq/how_can_i_download_a_specific_version.md b/faq/how_can_i_download_a_specific_version.md index c4f60c6e8..7ab593411 100644 --- a/faq/how_can_i_download_a_specific_version.md +++ b/faq/how_can_i_download_a_specific_version.md @@ -1,6 +1,7 @@ --- title: Which version of FieldTrip should I download? -tags: [faq, download, release] +category: faq +tags: [download, release] --- Our [download server](https://download.fieldtriptoolbox.org/) holds recent versions of the FieldTrip toolbox code, corresponding to [tagged versions](https://github.com/fieldtrip/fieldtrip/tags) on GitHub. In general we also archive the latest released version of every year on , which correspond to the persistently archived versions on [Zenodo](https://zenodo.org/records/10495308). diff --git a/faq/how_can_i_extend_the_reading_functions_with_a_new_dataformat.md b/faq/how_can_i_extend_the_reading_functions_with_a_new_dataformat.md index 8f2c3b11d..2960c9147 100644 --- a/faq/how_can_i_extend_the_reading_functions_with_a_new_dataformat.md +++ b/faq/how_can_i_extend_the_reading_functions_with_a_new_dataformat.md @@ -1,6 +1,7 @@ --- title: How can I extend the reading functions with a new dataformat? -tags: [faq, dataformat, preprocessing] +category: faq +tags: [dataformat, preprocessing] --- # How can I extend the reading functions with a new dataformat? diff --git a/faq/how_can_i_find_out_what_eventvalues_and_eventtypes_there_are_in_my_data.md b/faq/how_can_i_find_out_what_eventvalues_and_eventtypes_there_are_in_my_data.md index b4076107d..b10cda273 100644 --- a/faq/how_can_i_find_out_what_eventvalues_and_eventtypes_there_are_in_my_data.md +++ b/faq/how_can_i_find_out_what_eventvalues_and_eventtypes_there_are_in_my_data.md @@ -1,6 +1,7 @@ --- title: How can I find out what eventvalues and eventtypes there are in my data? -tags: [preprocessing, raw, faq, trigger, event, values, type, eventvalue, eventtype] +category: faq +tags: [preprocessing, raw, trigger, event, values, type, eventvalue, eventtype] --- # How can I find out what eventvalues and eventtypes there are in my data? diff --git a/faq/how_can_i_fine-tune_my_bem_volume_conduction_model.md b/faq/how_can_i_fine-tune_my_bem_volume_conduction_model.md index 37db96220..826a08203 100644 --- a/faq/how_can_i_fine-tune_my_bem_volume_conduction_model.md +++ b/faq/how_can_i_fine-tune_my_bem_volume_conduction_model.md @@ -1,6 +1,7 @@ --- title: How can I fine-tune my BEM volume conduction model? -tags: [faq, source, headmodel] +category: faq +tags: [source, headmodel] --- # How can I fine-tune my BEM volume conduction model? diff --git a/faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file.md b/faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file.md index c8c01664a..269668bee 100644 --- a/faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file.md +++ b/faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file.md @@ -1,6 +1,7 @@ --- title: How can I fix a corrupt CTF meg4 file? -tags: [faq, corrupt, ctf, raw] +category: faq +tags: [corrupt, ctf, raw] --- # How can I fix a corrupt CTF meg4 file? diff --git a/faq/how_can_i_fix_a_corrupt_ctf_res4_header_file.md b/faq/how_can_i_fix_a_corrupt_ctf_res4_header_file.md index a809e67ab..cdf77d4a4 100644 --- a/faq/how_can_i_fix_a_corrupt_ctf_res4_header_file.md +++ b/faq/how_can_i_fix_a_corrupt_ctf_res4_header_file.md @@ -1,6 +1,7 @@ --- title: How can I fix a corrupt CTF res4 header file? -tags: [faq, corrupt, ctf, raw] +category: faq +tags: [corrupt, ctf, raw] --- # How can I fix a corrupt CTF res4 header file? diff --git a/faq/how_can_i_import_my_own_dataformat.md b/faq/how_can_i_import_my_own_dataformat.md index 9ca6963ca..133f9f911 100644 --- a/faq/how_can_i_import_my_own_dataformat.md +++ b/faq/how_can_i_import_my_own_dataformat.md @@ -1,6 +1,7 @@ --- title: How can I import my own data format? -tags: [faq, dataformat, preprocessing] +category: faq +tags: [dataformat, preprocessing] --- # How can I import my own data format? diff --git a/faq/how_can_i_inspect_the_electrode_impedances_of_my_data.md b/faq/how_can_i_inspect_the_electrode_impedances_of_my_data.md index 84852598e..1137fa0ff 100644 --- a/faq/how_can_i_inspect_the_electrode_impedances_of_my_data.md +++ b/faq/how_can_i_inspect_the_electrode_impedances_of_my_data.md @@ -1,6 +1,7 @@ --- title: How can I inspect the electrode impedances of my data? -tags: [faq, eeg, electrode] +category: faq +tags: [eeg, electrode] --- # How can I inspect the electrode impedances of my data? diff --git a/faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts.md b/faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts.md index 4bb8f8298..ecc48980e 100644 --- a/faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts.md +++ b/faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts.md @@ -1,6 +1,7 @@ --- title: How can I interpret the different types of padding in FieldTrip? -tags: [faq, preprocessing, artifact, filter] +category: faq +tags: [preprocessing, artifact, filter] --- # How can I interpret the different types of padding in FieldTrip? diff --git a/faq/how_can_i_keep_track_of_the_changes_to_the_code.md b/faq/how_can_i_keep_track_of_the_changes_to_the_code.md index 667626b46..f30b1564b 100644 --- a/faq/how_can_i_keep_track_of_the_changes_to_the_code.md +++ b/faq/how_can_i_keep_track_of_the_changes_to_the_code.md @@ -1,6 +1,7 @@ --- title: How can I keep track of changes to the code? -tags: [faq, download, development, cvs, svn, git] +category: faq +tags: [download, development, cvs, svn, git] --- # How can I keep track of changes to the code? diff --git a/faq/how_can_i_map_source_locations_between_two_different_representations.md b/faq/how_can_i_map_source_locations_between_two_different_representations.md index 988730592..135b56af7 100644 --- a/faq/how_can_i_map_source_locations_between_two_different_representations.md +++ b/faq/how_can_i_map_source_locations_between_two_different_representations.md @@ -1,6 +1,7 @@ --- title: How can I map source locations onto an anatomical label in an atlas? -tags: [faq, source, interpolate, atlas, label] +category: faq +tags: [source, interpolate, atlas, label] --- # How can I map source locations onto an anatomical label in an atlas? diff --git a/faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers.md b/faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers.md index 530582bbe..5b80294ab 100644 --- a/faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers.md +++ b/faq/how_can_i_merge_two_datasets_that_were_acquired_simultaneously_with_different_amplifiers.md @@ -1,6 +1,7 @@ --- title: How can I merge two datasets that were acquired simultaneously with different amplifiers? -tags: [faq, preprocessing, raw, dataformat, eeg, meg] +category: faq +tags: [preprocessing, raw, dataformat, eeg, meg] --- # How can I merge two datasets that were acquired simultaneously with different amplifiers? diff --git a/faq/how_can_i_monitor_a_subject_s_head_position_during_a_meg_session.md b/faq/how_can_i_monitor_a_subject_s_head_position_during_a_meg_session.md index 5d0b78626..ec5626224 100644 --- a/faq/how_can_i_monitor_a_subject_s_head_position_during_a_meg_session.md +++ b/faq/how_can_i_monitor_a_subject_s_head_position_during_a_meg_session.md @@ -1,6 +1,7 @@ --- title: How can I monitor a subject's head position during a MEG session? -tags: [faq, meg, realtime] +category: faq +tags: [meg, realtime] --- # How can I monitor a subject's head position during a MEG session? diff --git a/faq/how_can_i_preprocess_a_dataset_that_is_too_large_to_fit_into_memory.md b/faq/how_can_i_preprocess_a_dataset_that_is_too_large_to_fit_into_memory.md index 7340bbf75..3e74a8fce 100644 --- a/faq/how_can_i_preprocess_a_dataset_that_is_too_large_to_fit_into_memory.md +++ b/faq/how_can_i_preprocess_a_dataset_that_is_too_large_to_fit_into_memory.md @@ -1,6 +1,7 @@ --- title: How can I preprocess a dataset that is too large to fit into memory? -tags: [faq, preprocessing, memory] +category: faq +tags: [preprocessing, memory] --- # How can I preprocess a dataset that is too large to fit into memory? diff --git a/faq/how_can_i_process_continuous_data_without_triggers.md b/faq/how_can_i_process_continuous_data_without_triggers.md index e13ffa903..f29c1ad9a 100644 --- a/faq/how_can_i_process_continuous_data_without_triggers.md +++ b/faq/how_can_i_process_continuous_data_without_triggers.md @@ -1,6 +1,7 @@ --- title: How can I process continuous data without triggers? -tags: [preprocessing, continuous, raw, faq] +category: faq +tags: [preprocessing, continuous, raw] --- # How can I process continuous data without triggers? diff --git a/faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates.md b/faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates.md index 454382ab2..79e6a8070 100644 --- a/faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates.md +++ b/faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates.md @@ -1,6 +1,7 @@ --- title: How can I read all channels from an EDF file that contains multiple sampling rates? -tags: [faq, edf, preprocessing] +category: faq +tags: [edf, preprocessing] --- # How can I read all channels from an EDF file that contains multiple sampling rates? diff --git a/faq/how_can_i_read_corrupted_unsaved_ctf_data.md b/faq/how_can_i_read_corrupted_unsaved_ctf_data.md index 34652d8a7..497bb3878 100644 --- a/faq/how_can_i_read_corrupted_unsaved_ctf_data.md +++ b/faq/how_can_i_read_corrupted_unsaved_ctf_data.md @@ -1,6 +1,7 @@ --- title: How can I read corrupted (unsaved) CTF data? -tags: [faq, raw, corrupt, preprocessing, ctf] +category: faq +tags: [raw, corrupt, preprocessing, ctf] --- # How can I read corrupted (unsaved) CTF data? diff --git a/faq/how_can_i_read_egi_mff_data_without_the_jvm.md b/faq/how_can_i_read_egi_mff_data_without_the_jvm.md index 2b6463564..fc374bec8 100644 --- a/faq/how_can_i_read_egi_mff_data_without_the_jvm.md +++ b/faq/how_can_i_read_egi_mff_data_without_the_jvm.md @@ -1,6 +1,7 @@ --- title: How can I read EGI mff data without the JVM? -tags: [faq, egi] +category: faq +tags: [egi] --- # How can I read EGI mff data without the JVM? diff --git a/faq/how_can_i_test_an_interaction_effect_using_cluster-based_permutation_tests.md b/faq/how_can_i_test_an_interaction_effect_using_cluster-based_permutation_tests.md index f7398c2d9..ac1b89e27 100644 --- a/faq/how_can_i_test_an_interaction_effect_using_cluster-based_permutation_tests.md +++ b/faq/how_can_i_test_an_interaction_effect_using_cluster-based_permutation_tests.md @@ -1,6 +1,7 @@ --- title: How to test an interaction effect using cluster-based permutation tests? -tags: [faq, statistics] +category: faq +tags: [statistics] --- # How to test an interaction effect using cluster-based permutation tests? diff --git a/faq/how_can_i_test_for_correlations_between_neuronal_data_and_quantitative_stimulus_and_behavioural_variables.md b/faq/how_can_i_test_for_correlations_between_neuronal_data_and_quantitative_stimulus_and_behavioural_variables.md index f755d6fdb..882a2c870 100644 --- a/faq/how_can_i_test_for_correlations_between_neuronal_data_and_quantitative_stimulus_and_behavioural_variables.md +++ b/faq/how_can_i_test_for_correlations_between_neuronal_data_and_quantitative_stimulus_and_behavioural_variables.md @@ -1,6 +1,7 @@ --- title: How can I test for correlations between neuronal data and quantitative stimulus and behavioral variables? -tags: [faq, statistics] +category: faq +tags: [statistics] --- # How can I test for correlations between neuronal data and quantitative stimulus and behavioral variables? diff --git a/faq/how_can_i_test_the_serial_port_connection_between_two_computers.md b/faq/how_can_i_test_the_serial_port_connection_between_two_computers.md index 0e7a796b3..e9b863925 100644 --- a/faq/how_can_i_test_the_serial_port_connection_between_two_computers.md +++ b/faq/how_can_i_test_the_serial_port_connection_between_two_computers.md @@ -1,6 +1,7 @@ --- title: What kind of cable do I need for a serial port connection between two computers? -tags: [faq, realtime] +category: faq +tags: [realtime] --- # What kind of cable do I need for a serial port connection between two computers? diff --git a/faq/how_can_i_test_whether_a_behavioral_measure_is_phasic.md b/faq/how_can_i_test_whether_a_behavioral_measure_is_phasic.md index 09c648736..912114cc7 100644 --- a/faq/how_can_i_test_whether_a_behavioral_measure_is_phasic.md +++ b/faq/how_can_i_test_whether_a_behavioral_measure_is_phasic.md @@ -1,6 +1,7 @@ --- title: How can I test whether a behavioral measure is phasic? -tags: [faq, statistics, freq] +category: faq +tags: [statistics, freq] --- # How can I test whether a behavioral measure is phasic? diff --git a/faq/how_can_i_transform_trigger_values_from_bits_to_decimal_representation_with_a_trialfun.md b/faq/how_can_i_transform_trigger_values_from_bits_to_decimal_representation_with_a_trialfun.md index f8a8b583e..3128072ba 100644 --- a/faq/how_can_i_transform_trigger_values_from_bits_to_decimal_representation_with_a_trialfun.md +++ b/faq/how_can_i_transform_trigger_values_from_bits_to_decimal_representation_with_a_trialfun.md @@ -1,6 +1,7 @@ --- title: How can I transform trigger values from bits to decimal representation with a trialfun? -tags: [faq, trialfun] +category: faq +tags: [trialfun] --- # How can I transform trigger values from bits to decimal representation with a trialfun? diff --git a/faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab.md b/faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab.md index f5d1eca20..02b7c3747 100644 --- a/faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab.md +++ b/faq/how_can_i_use_my_macbook_pro_for_stimulus_presentation_in_the_meg_lab.md @@ -1,6 +1,7 @@ --- title: How can I use my MacBook Pro for stimulus presentation in the MEG lab? -tags: [faq, matlab] +category: faq +tags: [matlab] --- # How can I use my MacBook Pro for stimulus presentation in the MEG lab? diff --git a/faq/how_can_i_use_the_databrowser.md b/faq/how_can_i_use_the_databrowser.md index ec9a076ba..713e00693 100644 --- a/faq/how_can_i_use_the_databrowser.md +++ b/faq/how_can_i_use_the_databrowser.md @@ -1,6 +1,7 @@ --- title: How can I use the databrowser? -tags: [faq, databrowser, plotting, artifact] +category: faq +tags: [databrowser, plotting, artifact] --- # How can I use the databrowser? diff --git a/faq/how_can_i_use_the_ivar_uvar_wvar_and_cvar_options_to_precisely_control_the_permutations.md b/faq/how_can_i_use_the_ivar_uvar_wvar_and_cvar_options_to_precisely_control_the_permutations.md index 39be2633b..c1ff9cf6b 100644 --- a/faq/how_can_i_use_the_ivar_uvar_wvar_and_cvar_options_to_precisely_control_the_permutations.md +++ b/faq/how_can_i_use_the_ivar_uvar_wvar_and_cvar_options_to_precisely_control_the_permutations.md @@ -1,6 +1,7 @@ --- title: How can I use the ivar, uvar, wvar and cvar options to precisely control the permutations? -tags: [faq, statistics] +category: faq +tags: [statistics] --- # How can I use the ivar, uvar, wvar and cvar options to precisely control the permutations? diff --git a/faq/how_can_i_visualize_a_localspheres_volume_conductor_model.md b/faq/how_can_i_visualize_a_localspheres_volume_conductor_model.md index a01140555..92cc8e415 100644 --- a/faq/how_can_i_visualize_a_localspheres_volume_conductor_model.md +++ b/faq/how_can_i_visualize_a_localspheres_volume_conductor_model.md @@ -1,6 +1,7 @@ --- title: How can I visualize a localspheres volume conductor model? -tags: [faq, headmodel, localspheres] +category: faq +tags: [headmodel, localspheres] --- # How can I visualize a localspheres volume conductor model? diff --git a/faq/how_can_i_visualize_the_different_geometrical_objects_that_are_needed_for_forward_and_inverse_computations.md b/faq/how_can_i_visualize_the_different_geometrical_objects_that_are_needed_for_forward_and_inverse_computations.md index f8041304d..4dc308e4e 100644 --- a/faq/how_can_i_visualize_the_different_geometrical_objects_that_are_needed_for_forward_and_inverse_computations.md +++ b/faq/how_can_i_visualize_the_different_geometrical_objects_that_are_needed_for_forward_and_inverse_computations.md @@ -1,6 +1,7 @@ --- title: How can I visualize the different geometrical objects that are needed for forward and inverse computations? -tags: [faq, source, headmodel, inverse, warning] +category: faq +tags: [source, headmodel, inverse, warning] --- # How can I visualize the different geometrical objects that are needed for forward and inverse computations? diff --git a/faq/how_can_i_visualize_the_neuromag_head_position_indicator_coils.md b/faq/how_can_i_visualize_the_neuromag_head_position_indicator_coils.md index 99a68f590..6c630c37a 100644 --- a/faq/how_can_i_visualize_the_neuromag_head_position_indicator_coils.md +++ b/faq/how_can_i_visualize_the_neuromag_head_position_indicator_coils.md @@ -1,6 +1,7 @@ --- title: How can I visualize the neuromag head position indicator coils? -tags: [faq, neuromag, head, localization] +category: faq +tags: [neuromag, head, localization] --- # How can I visualize the neuromag head position indicator coils? diff --git a/faq/how_change_mri_orientation_size_fov.md b/faq/how_change_mri_orientation_size_fov.md index ff6c80ce8..2fdbf8106 100644 --- a/faq/how_change_mri_orientation_size_fov.md +++ b/faq/how_change_mri_orientation_size_fov.md @@ -1,6 +1,7 @@ --- title: How to change the MRI orientation, the voxel size or the field-of-view? -tags: [faq, mri, volume, coordinate] +category: faq +tags: [mri, volume, coordinate] --- # How to change the MRI orientation, the voxel size or the field-of-view? diff --git a/faq/how_do_i_construct_a_layout_file_for_the_plotting_functions.md b/faq/how_do_i_construct_a_layout_file_for_the_plotting_functions.md index e0aa04e33..6258c3f6e 100644 --- a/faq/how_do_i_construct_a_layout_file_for_the_plotting_functions.md +++ b/faq/how_do_i_construct_a_layout_file_for_the_plotting_functions.md @@ -1,6 +1,7 @@ --- title: How do I construct a layout file for the plotting functions? -tags: [faq, layout, plotting] +category: faq +tags: [layout, plotting] --- # How do I construct a layout file for the plotting functions? diff --git a/faq/how_do_i_install_the_openmeeg_binaries.md b/faq/how_do_i_install_the_openmeeg_binaries.md index 1db5eb5c0..ad754e4de 100644 --- a/faq/how_do_i_install_the_openmeeg_binaries.md +++ b/faq/how_do_i_install_the_openmeeg_binaries.md @@ -1,6 +1,7 @@ --- title: How do I install the OpenMEEG binaries -tags: [faq, openmeeg, headmodel] +category: faq +tags: [openmeeg, headmodel] --- # How do I install the OpenMEEG binaries diff --git a/faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call.md b/faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call.md index 302ece3d5..a6742cbf4 100644 --- a/faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call.md +++ b/faq/how_do_i_prevent_fieldtrip_from_printing_the_time_and_memory_after_each_function_call.md @@ -1,6 +1,7 @@ --- title: How do I prevent FieldTrip from printing the time and memory after each function call? -tags: [faq] +category: faq +tags: [matlab] --- # How do I prevent FieldTrip from printing the time and memory after each function call? diff --git a/faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test.md b/faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test.md index e2b60224c..f7612af0a 100644 --- a/faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test.md +++ b/faq/how_does_a_difference_in_trial_numbers_per_condition_affect_my_statistical_test.md @@ -1,6 +1,7 @@ --- title: How does a difference in trial numbers per condition affect my statistical test -tags: [faq, statistics] +category: faq +tags: [statistics] --- {% include markup/red %} diff --git a/faq/how_does_ft_prepare_neighbours_work.md b/faq/how_does_ft_prepare_neighbours_work.md index 7e0b65740..9a0bdf5ec 100644 --- a/faq/how_does_ft_prepare_neighbours_work.md +++ b/faq/how_does_ft_prepare_neighbours_work.md @@ -1,6 +1,7 @@ --- title: How does ft_prepare_neighbours work? -tags: [faq, statistics, cluster] +category: faq +tags: [statistics, cluster] --- # How does ft_prepare_neighbours work? diff --git a/faq/how_does_the_ctf_higher-order_gradiometer_work.md b/faq/how_does_the_ctf_higher-order_gradiometer_work.md index 3a85c0653..742b4196a 100644 --- a/faq/how_does_the_ctf_higher-order_gradiometer_work.md +++ b/faq/how_does_the_ctf_higher-order_gradiometer_work.md @@ -1,6 +1,7 @@ --- title: How does the CTF higher-order gradiometer work? -tags: [faq, ctf] +category: faq +tags: [ctf] --- # How does the CTF higher-order gradiometer work? diff --git a/faq/how_does_the_filter_padding_in_preprocessing_work.md b/faq/how_does_the_filter_padding_in_preprocessing_work.md index 0c6e6f339..cc6e900eb 100644 --- a/faq/how_does_the_filter_padding_in_preprocessing_work.md +++ b/faq/how_does_the_filter_padding_in_preprocessing_work.md @@ -1,6 +1,7 @@ --- title: How does the filter padding in preprocessing work? -tags: [faq, preprocessing, artifact, filter] +category: faq +tags: [preprocessing, artifact, filter] --- # How does the filter padding in preprocessing work? diff --git a/faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming.md b/faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming.md index 231251c75..5eafe25c8 100644 --- a/faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming.md +++ b/faq/how_fast_is_the_fieldtrip_buffer_for_realtime_data_streaming.md @@ -1,6 +1,7 @@ --- title: How fast is the FieldTrip buffer for realtime data streaming? -tags: [faq, realtime, matlab, memory] +category: faq +tags: [realtime, matlab, memory] --- # How fast is the FieldTrip buffer for realtime data streaming? diff --git a/faq/how_is_anatomical_functional_or_statistical_volume_data_described.md b/faq/how_is_anatomical_functional_or_statistical_volume_data_described.md index 27293836d..572984587 100644 --- a/faq/how_is_anatomical_functional_or_statistical_volume_data_described.md +++ b/faq/how_is_anatomical_functional_or_statistical_volume_data_described.md @@ -1,6 +1,7 @@ --- title: How is anatomical, functional or statistical "volume data" described? -tags: [faq, volume, datatype] +category: faq +tags: [volume, datatype] --- # How is anatomical, functional or statistical "volume data" described? diff --git a/faq/how_is_the_segmentation_defined.md b/faq/how_is_the_segmentation_defined.md index 60bd95814..076e2d0d6 100644 --- a/faq/how_is_the_segmentation_defined.md +++ b/faq/how_is_the_segmentation_defined.md @@ -1,6 +1,7 @@ --- title: How is the segmentation defined? -tags: [faq, datatype, segmentation, eeg, meg, headmodel] +category: faq +tags: [datatype, segmentation, eeg, meg, headmodel] --- # How is the segmentation defined? diff --git a/faq/how_many_lines_of_code_does_fieldtrip_consist_of.md b/faq/how_many_lines_of_code_does_fieldtrip_consist_of.md index 2f29e5ca4..8df74a06f 100644 --- a/faq/how_many_lines_of_code_does_fieldtrip_consist_of.md +++ b/faq/how_many_lines_of_code_does_fieldtrip_consist_of.md @@ -1,6 +1,7 @@ --- title: How many lines of code does FieldTrip consist of? -tags: [faq, matlab] +category: faq +tags: [matlab] --- # How many lines of code does FieldTrip consist of? diff --git a/faq/how_many_people_are_subscribed_to_the_email_discussion_list.md b/faq/how_many_people_are_subscribed_to_the_email_discussion_list.md index b10cc6f7b..912fd7b3e 100644 --- a/faq/how_many_people_are_subscribed_to_the_email_discussion_list.md +++ b/faq/how_many_people_are_subscribed_to_the_email_discussion_list.md @@ -1,6 +1,7 @@ --- title: How many people are subscribed to the email discussion list? -tags: [faq, email] +category: faq +tags: [email] --- # How many people are subscribed to the email discussion list? diff --git a/faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test.md b/faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test.md index 606093312..a55489d05 100644 --- a/faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test.md +++ b/faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test.md @@ -1,6 +1,7 @@ --- title: How NOT to interpret results from a cluster-based permutation test -tags: [faq, statistics] +category: faq +tags: [statistics] --- # How NOT to interpret results from a cluster-based permutation test diff --git a/faq/how_should_i_get_started_with_the_fieldtrip_realtime_buffer.md b/faq/how_should_i_get_started_with_the_fieldtrip_realtime_buffer.md index a43d0273a..923b4e7a9 100644 --- a/faq/how_should_i_get_started_with_the_fieldtrip_realtime_buffer.md +++ b/faq/how_should_i_get_started_with_the_fieldtrip_realtime_buffer.md @@ -1,6 +1,7 @@ --- title: How should I get started with the FieldTrip realtime buffer? -tags: [realtime, faq] +category: faq +tags: [realtime] --- # How should I get started with the FieldTrip realtime buffer? diff --git a/faq/how_should_i_prepare_for_the_upcoming_fieldtrip_workshop.md b/faq/how_should_i_prepare_for_the_upcoming_fieldtrip_workshop.md index 59032628b..3e9cb0a4f 100644 --- a/faq/how_should_i_prepare_for_the_upcoming_fieldtrip_workshop.md +++ b/faq/how_should_i_prepare_for_the_upcoming_fieldtrip_workshop.md @@ -1,6 +1,7 @@ --- title: How should I prepare for the upcoming FieldTrip workshop? -tags: [faq, workshop] +category: faq +tags: [workshop] --- # How should I prepare for the upcoming FieldTrip workshop? diff --git a/faq/how_should_i_refer_to_fieldtrip_in_my_publication.md b/faq/how_should_i_refer_to_fieldtrip_in_my_publication.md index d614a172b..44e0a6879 100644 --- a/faq/how_should_i_refer_to_fieldtrip_in_my_publication.md +++ b/faq/how_should_i_refer_to_fieldtrip_in_my_publication.md @@ -1,6 +1,7 @@ --- title: How should I refer to FieldTrip in my publication? -tags: [faq, reference] +category: faq +tags: [reference] --- # How should I refer to FieldTrip in my publication? diff --git a/faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head.md b/faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head.md index 6b78b85ac..2e9ace678 100644 --- a/faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head.md +++ b/faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head.md @@ -1,6 +1,7 @@ --- title: How should I report the positions of the fiducial points on the head? -tags: [faq, electrode, fiducial, polhemus, coordinate] +category: faq +tags: [electrode, fiducial, polhemus, coordinate] --- # How should I report the positions of the fiducial points on the head? diff --git a/faq/how_should_i_send_example_data_to_the_developers.md b/faq/how_should_i_send_example_data_to_the_developers.md index c739c4d25..9ef71eccf 100644 --- a/faq/how_should_i_send_example_data_to_the_developers.md +++ b/faq/how_should_i_send_example_data_to_the_developers.md @@ -1,6 +1,7 @@ --- title: How should I share example data with the email list or developers? -tags: [faq, email, development, git] +category: faq +tags: [email, development, git] --- # How should I share example data with the email list or developers? diff --git a/faq/how_to_ask_good_questions_to_the_community.md b/faq/how_to_ask_good_questions_to_the_community.md index 9f9584171..ac74a3664 100644 --- a/faq/how_to_ask_good_questions_to_the_community.md +++ b/faq/how_to_ask_good_questions_to_the_community.md @@ -1,6 +1,7 @@ --- title: How to ask good questions to the community? -tags: [faq, support, email] +category: faq +tags: [support, email] --- # How to ask good questions to the community? diff --git a/faq/how_to_compile_matlab_code_into_stand-alone_executables.md b/faq/how_to_compile_matlab_code_into_stand-alone_executables.md index f56122f23..cdf352469 100644 --- a/faq/how_to_compile_matlab_code_into_stand-alone_executables.md +++ b/faq/how_to_compile_matlab_code_into_stand-alone_executables.md @@ -1,6 +1,7 @@ --- title: How to compile MATLAB code into stand-alone executables? -tags: [faq, qsub] +category: faq +tags: [qsub] --- # How to compile MATLAB code into stand-alone executables? diff --git a/faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions.md b/faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions.md index eafc42882..5956d6423 100644 --- a/faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions.md +++ b/faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions.md @@ -1,6 +1,7 @@ --- title: How to coregister an anatomical MRI with the gradiometer or electrode positions? -tags: [faq, eeg, meg, mri, headmodel, source, coordinate] +category: faq +tags: [eeg, meg, mri, headmodel, source, coordinate] --- # How to coregister an anatomical MRI with the gradiometer or electrode positions? diff --git a/faq/how_to_get_started_with_distributed_computing_using_qsub.md b/faq/how_to_get_started_with_distributed_computing_using_qsub.md index 2a7d30699..a4a24c283 100644 --- a/faq/how_to_get_started_with_distributed_computing_using_qsub.md +++ b/faq/how_to_get_started_with_distributed_computing_using_qsub.md @@ -1,6 +1,7 @@ --- title: How to get started with distributed computing using qsub? -tags: [faq, qsub] +category: faq +tags: [qsub] --- # How to get started with distributed computing using qsub? diff --git a/faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox.md b/faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox.md index e8f42d3dd..62b9da3e5 100644 --- a/faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox.md +++ b/faq/how_to_get_started_with_the_matlab_distributed_computing_toolbox.md @@ -1,6 +1,7 @@ --- title: How to get started with the MATLAB distributed computing toolbox? -tags: [faq, distcomp, parfor] +category: faq +tags: [distcomp, parfor] --- # How to get started with the MATLAB distributed computing toolbox? diff --git a/faq/how_to_interpret_the_sign_of_the_phase_slope_index.md b/faq/how_to_interpret_the_sign_of_the_phase_slope_index.md index 14eaca40a..59bfb7a1c 100644 --- a/faq/how_to_interpret_the_sign_of_the_phase_slope_index.md +++ b/faq/how_to_interpret_the_sign_of_the_phase_slope_index.md @@ -1,6 +1,7 @@ --- title: How to interpret the sign of the phase slope index? -tags: [faq, coherence] +category: faq +tags: [coherence] --- # How to interpret the sign of the phase slope index? diff --git a/faq/how_to_select_the_correct_spm_toolbox.md b/faq/how_to_select_the_correct_spm_toolbox.md index d63e95a71..3809aa06c 100644 --- a/faq/how_to_select_the_correct_spm_toolbox.md +++ b/faq/how_to_select_the_correct_spm_toolbox.md @@ -1,6 +1,7 @@ --- title: How to select the correct SPM toolbox? -tags: [faq, spm, mex, toolbox, path] +category: faq +tags: [spm, mex, toolbox, path] --- # How to select the correct SPM toolbox? diff --git a/faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity.md b/faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity.md index fc54bbf79..de73023fa 100644 --- a/faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity.md +++ b/faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity.md @@ -1,6 +1,7 @@ --- title: I am getting strange artifacts in figures that use opacity -tags: [faq, plotting, artifact] +category: faq +tags: [plotting, artifact] --- # I am getting strange artifacts in figures that use opacity diff --git a/faq/i_am_having_problems_downloading.md b/faq/i_am_having_problems_downloading.md index cfc6ce476..1fa80f615 100644 --- a/faq/i_am_having_problems_downloading.md +++ b/faq/i_am_having_problems_downloading.md @@ -1,6 +1,7 @@ --- title: I am having problems downloading -tags: [faq, download, release] +category: faq +tags: [download, release] redirect_from: - /faq/i_am_having_problems_downloading_from_the_ftp_server/ --- diff --git a/faq/i_am_having_problems_printing_figures_that_use_opacity.md b/faq/i_am_having_problems_printing_figures_that_use_opacity.md index cc508ff34..d8137568a 100644 --- a/faq/i_am_having_problems_printing_figures_that_use_opacity.md +++ b/faq/i_am_having_problems_printing_figures_that_use_opacity.md @@ -1,6 +1,7 @@ --- title: I am having problems printing figures that use opacity -tags: [faq, plotting] +category: faq +tags: [plotting] --- # I am having problems printing figures that use opacity diff --git a/faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file.md b/faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file.md index 27f80fd16..135379128 100644 --- a/faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file.md +++ b/faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file.md @@ -1,6 +1,7 @@ --- title: I am having problems reading the CTF .hc headcoordinates file -tags: [faq, ctf, raw] +category: faq +tags: [ctf, raw] --- # I am having problems reading the CTF .hc headcoordinates file diff --git a/faq/i_am_working_at_the_donders_should_i_also_download_fieldtrip.md b/faq/i_am_working_at_the_donders_should_i_also_download_fieldtrip.md index b9bd7cd86..d4597aa07 100644 --- a/faq/i_am_working_at_the_donders_should_i_also_download_fieldtrip.md +++ b/faq/i_am_working_at_the_donders_should_i_also_download_fieldtrip.md @@ -1,6 +1,7 @@ --- title: I am working at the Donders, should I also download FieldTrip? -tags: [faq, path, download] +category: faq +tags: [path, download] --- # I am working at the Donders, should I also download FieldTrip? diff --git a/faq/i_have_problems_reading_in_neuroscan_.cnt_files._how_can_i_fix_this.md b/faq/i_have_problems_reading_in_neuroscan_.cnt_files._how_can_i_fix_this.md index 7437c213b..0504a17d3 100644 --- a/faq/i_have_problems_reading_in_neuroscan_.cnt_files._how_can_i_fix_this.md +++ b/faq/i_have_problems_reading_in_neuroscan_.cnt_files._how_can_i_fix_this.md @@ -1,6 +1,7 @@ --- title: I have problems reading in neuroscan .cnt files. How can I fix this? -tags: [faq, raw, neuroscan, eeg, dataformat, preprocessing] +category: faq +tags: [raw, neuroscan, eeg, dataformat, preprocessing] --- # I have problems reading in neuroscan .cnt files. How can I fix this? diff --git a/faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that.md b/faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that.md index fbcebd43f..1be6171f4 100644 --- a/faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that.md +++ b/faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that.md @@ -1,6 +1,7 @@ --- title: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that? -tags: [faq, ica, data, crash] +category: faq +tags: [ica, data, crash] --- # I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that? diff --git a/faq/i_used_to_work_with_trl-matrices_that_have_more_than_3_columns._why_is_this_not_supported_anymore.md b/faq/i_used_to_work_with_trl-matrices_that_have_more_than_3_columns._why_is_this_not_supported_anymore.md index 5535cddc7..fa7beddcb 100644 --- a/faq/i_used_to_work_with_trl-matrices_that_have_more_than_3_columns._why_is_this_not_supported_anymore.md +++ b/faq/i_used_to_work_with_trl-matrices_that_have_more_than_3_columns._why_is_this_not_supported_anymore.md @@ -1,6 +1,7 @@ --- title: I used to work with trl-matrices that have more than 3 columns. Why is this not supported anymore? -tags: [faq, trialinfo, trialdef, trialfun] +category: faq +tags: [trialinfo, trialdef, trialfun] --- # I used to work with trl-matrices that have more than 3 columns. Why is this not supported anymore? diff --git a/faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip.md b/faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip.md index 5cdfc09bb..1e11584b4 100644 --- a/faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip.md +++ b/faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip.md @@ -1,6 +1,7 @@ --- title: In what way can frequency domain data be represented in FieldTrip? -tags: [faq, freq, connectivity, coherence] +category: faq +tags: [freq, connectivity, coherence] --- # In what way can frequency domain data be represented in FieldTrip? diff --git a/faq/installation.md b/faq/installation.md index 94623fa1d..57e593d39 100644 --- a/faq/installation.md +++ b/faq/installation.md @@ -1,6 +1,7 @@ --- title: Installation and setting up the path -tags: [faq, matlab, path, warning] +category: faq +tags: [matlab, path, warning] redirect_from: - /faq/should_i_add_fieldtrip_with_all_subdirectories_to_my_matlab_path/ --- diff --git a/faq/is_it_good_or_bad_to_have_dipole_locations_outside_of_the_brain_for_which_the_source_reconstruction_is_computed.md b/faq/is_it_good_or_bad_to_have_dipole_locations_outside_of_the_brain_for_which_the_source_reconstruction_is_computed.md index 1de284537..29774d991 100644 --- a/faq/is_it_good_or_bad_to_have_dipole_locations_outside_of_the_brain_for_which_the_source_reconstruction_is_computed.md +++ b/faq/is_it_good_or_bad_to_have_dipole_locations_outside_of_the_brain_for_which_the_source_reconstruction_is_computed.md @@ -1,6 +1,7 @@ --- title: Is it good or bad to have dipole locations outside of the brain for which the source reconstruction is computed? -tags: [faq, source] +category: faq +tags: [source] --- # Is it good or bad to have dipole locations outside of the brain for which the source reconstruction is computed? diff --git a/faq/is_it_important_to_have_accurate_measurements_of_electrode_locations_for_eeg_source_reconstruction.md b/faq/is_it_important_to_have_accurate_measurements_of_electrode_locations_for_eeg_source_reconstruction.md index dd1b750e3..b5ff19510 100644 --- a/faq/is_it_important_to_have_accurate_measurements_of_electrode_locations_for_eeg_source_reconstruction.md +++ b/faq/is_it_important_to_have_accurate_measurements_of_electrode_locations_for_eeg_source_reconstruction.md @@ -1,6 +1,7 @@ --- title: Is it important to have accurate measurements of electrode locations for EEG source reconstruction? -tags: [faq, source, eeg] +category: faq +tags: [source, eeg] --- # Is it important to have accurate measurements of electrode locations for EEG source reconstruction? diff --git a/faq/is_it_possible_to_keep_track_of_trial-specific_information_in_my_fieldtrip_analysis_pipeline.md b/faq/is_it_possible_to_keep_track_of_trial-specific_information_in_my_fieldtrip_analysis_pipeline.md index 45a89524d..8c2a0f0b5 100644 --- a/faq/is_it_possible_to_keep_track_of_trial-specific_information_in_my_fieldtrip_analysis_pipeline.md +++ b/faq/is_it_possible_to_keep_track_of_trial-specific_information_in_my_fieldtrip_analysis_pipeline.md @@ -1,6 +1,7 @@ --- title: Is it possible to keep track of trial-specific information in my analysis pipeline? -tags: [faq, trialinfo, trialdef, trialfun] +category: faq +tags: [trialinfo, trialdef, trialfun] --- # Is it possible to keep track of trial-specific information in my analysis pipeline? diff --git a/faq/itc.md b/faq/itc.md index 9f3abe562..cb912b916 100644 --- a/faq/itc.md +++ b/faq/itc.md @@ -1,6 +1,7 @@ --- title: How can I compute inter-trial coherence? -tags: [faq, coherence] +category: faq +tags: [coherence] --- # How can I compute inter-trial coherence? diff --git a/faq/matlab_complains_about_a_missing_or_invalid_mex_file_what_should_i_do.md b/faq/matlab_complains_about_a_missing_or_invalid_mex_file_what_should_i_do.md index e36a150af..b6930569d 100644 --- a/faq/matlab_complains_about_a_missing_or_invalid_mex_file_what_should_i_do.md +++ b/faq/matlab_complains_about_a_missing_or_invalid_mex_file_what_should_i_do.md @@ -1,6 +1,7 @@ --- title: MATLAB complains about a missing or invalid mex file, what should I do? -tags: [faq, matlab, mex] +category: faq +tags: [matlab, mex] --- # MATLAB complains about a missing or invalid mex file, what should I do? diff --git a/faq/matlab_does_not_see_the_functions_in_the_private_directory.md b/faq/matlab_does_not_see_the_functions_in_the_private_directory.md index c938e4633..3b0ff9aa4 100644 --- a/faq/matlab_does_not_see_the_functions_in_the_private_directory.md +++ b/faq/matlab_does_not_see_the_functions_in_the_private_directory.md @@ -1,6 +1,7 @@ --- title: MATLAB does not see the functions in the "private" directory -tags: [faq, function, matlab] +category: faq +tags: [function, matlab] --- # MATLAB does not see the functions in the "private" directory diff --git a/faq/matlab_replacements.md b/faq/matlab_replacements.md index 1b6bcea0e..1459e5bd6 100644 --- a/faq/matlab_replacements.md +++ b/faq/matlab_replacements.md @@ -1,6 +1,7 @@ --- title: Replacements for functions from MathWorks toolboxes -tags: [faq, matlab, toolbox, path] +category: faq +tags: [matlab, toolbox, path] --- # Replacements for functions from MathWorks toolboxes diff --git a/faq/matlab_requirements.md b/faq/matlab_requirements.md index ed006e674..ebf35e258 100644 --- a/faq/matlab_requirements.md +++ b/faq/matlab_requirements.md @@ -1,6 +1,7 @@ --- title: What are the MATLAB requirements for using FieldTrip? -tags: [faq, matlab, toolbox] +category: faq +tags: [matlab, toolbox] --- # What are the MATLAB requirements for using FieldTrip? diff --git a/faq/matlab_version_7.3_2006b_crashes_when_i_try_to_do.md b/faq/matlab_version_7.3_2006b_crashes_when_i_try_to_do.md index f1655c093..ed00371dc 100644 --- a/faq/matlab_version_7.3_2006b_crashes_when_i_try_to_do.md +++ b/faq/matlab_version_7.3_2006b_crashes_when_i_try_to_do.md @@ -1,6 +1,7 @@ --- title: MATLAB version 7.3 (2006b) crashes when I try to do ... -tags: [faq, matlab] +category: faq +tags: [matlab] --- # MATLAB version 7.3 (2006b) crashes when I try to do ... diff --git a/faq/mexmaci64_cannot_be_opened_because_the_developer_cannot_be_verified.md b/faq/mexmaci64_cannot_be_opened_because_the_developer_cannot_be_verified.md index d960cead9..036245e60 100644 --- a/faq/mexmaci64_cannot_be_opened_because_the_developer_cannot_be_verified.md +++ b/faq/mexmaci64_cannot_be_opened_because_the_developer_cannot_be_verified.md @@ -1,6 +1,7 @@ --- title: MATLAB complains that mexmaci64 cannot be opened because the developer cannot be verified -tags: [faq, matlab, mex] +category: faq +tags: [matlab, mex] --- # MATLAB complains that mexmaci64 cannot be opened because the developer cannot be verified diff --git a/faq/mtmconvol.md b/faq/mtmconvol.md index 841bc13ea..2688a0da9 100644 --- a/faq/mtmconvol.md +++ b/faq/mtmconvol.md @@ -1,6 +1,7 @@ --- title: How does MTMCONVOL work? -tags: [faq, freq] +category: faq +tags: [freq] --- # How does MTMCONVOL work? diff --git a/faq/my_mri_is_upside_down_is_this_a_problem.md b/faq/my_mri_is_upside_down_is_this_a_problem.md index 24991e99b..eaa22d478 100644 --- a/faq/my_mri_is_upside_down_is_this_a_problem.md +++ b/faq/my_mri_is_upside_down_is_this_a_problem.md @@ -1,6 +1,7 @@ --- title: My MRI is upside down, is this a problem? -tags: [faq, mri, volume, coordinate] +category: faq +tags: [mri, volume, coordinate] --- # My MRI is upside down, is this a problem? diff --git a/faq/open_data.md b/faq/open_data.md index 546952b08..0484dca24 100644 --- a/faq/open_data.md +++ b/faq/open_data.md @@ -1,6 +1,7 @@ --- title: Where can I find open access MEG/EEG data? -tags: [faq, dataset, sharing] +category: faq +tags: [dataset, sharing] --- # Where can I find open access MEG/EEG data? diff --git a/faq/reading_is_slow_can_i_write_my_raw_data_to_a_more_efficient_file_format.md b/faq/reading_is_slow_can_i_write_my_raw_data_to_a_more_efficient_file_format.md index 2b8b77a57..3d8ee0cdf 100644 --- a/faq/reading_is_slow_can_i_write_my_raw_data_to_a_more_efficient_file_format.md +++ b/faq/reading_is_slow_can_i_write_my_raw_data_to_a_more_efficient_file_format.md @@ -1,6 +1,7 @@ --- title: Reading is slow, can I write my raw data to a more efficient file format? -tags: [faq, preprocessing, dataformat, raw] +category: faq +tags: [preprocessing, dataformat, raw] --- # Reading is slow, can I write my raw data to a more efficient file format? diff --git a/faq/rename_channels.md b/faq/rename_channels.md index bf9417e3b..a46fab524 100644 --- a/faq/rename_channels.md +++ b/faq/rename_channels.md @@ -1,6 +1,7 @@ --- title: How can I rename channels in my data structure? -tags: [faq, preprocessing, montage] +category: faq +tags: [preprocessing, montage] --- # How can I rename channels in my data structure? diff --git a/faq/requirements.md b/faq/requirements.md index 0f796d929..3e1beabcd 100644 --- a/faq/requirements.md +++ b/faq/requirements.md @@ -1,6 +1,7 @@ --- title: What are the MATLAB and external requirements? -tags: [faq, matlab, toolbox] +category: faq +tags: [matlab, toolbox] --- # What are the MATLAB and external requirements? diff --git a/faq/resampling_lowpassfilter.md b/faq/resampling_lowpassfilter.md index 27142621b..318ec7b79 100644 --- a/faq/resampling_lowpassfilter.md +++ b/faq/resampling_lowpassfilter.md @@ -1,6 +1,7 @@ --- title: Do I need to resample my data, and if so, how is this to be done? -tags: [faq, preprocessing] +category: faq +tags: [preprocessing] --- # Do I need to resample my data, and if so, how is this to be done? diff --git a/faq/should_I_rereference_prior_to_or_after_ica_for_artifact_removal.md b/faq/should_I_rereference_prior_to_or_after_ica_for_artifact_removal.md index 5767a3538..ab41d9075 100644 --- a/faq/should_I_rereference_prior_to_or_after_ica_for_artifact_removal.md +++ b/faq/should_I_rereference_prior_to_or_after_ica_for_artifact_removal.md @@ -1,6 +1,7 @@ --- title: Should I rereference prior to or after ICA for artifact removal? -tags: [faq, ica] +category: faq +tags: [ica] --- # Should I rereference prior to or after ICA for artifact removal? diff --git a/faq/should_I_use_t_or_F_values_for_cluster-based_permutation_tests.md b/faq/should_I_use_t_or_F_values_for_cluster-based_permutation_tests.md index 756a05acb..ceaa6bb07 100644 --- a/faq/should_I_use_t_or_F_values_for_cluster-based_permutation_tests.md +++ b/faq/should_I_use_t_or_F_values_for_cluster-based_permutation_tests.md @@ -1,27 +1,24 @@ --- title: Should I use t or F values for cluster-based permutation tests? -tags: [faq, statistics] -author: Christoph Huber-Huber +category: faq +tags: [statistics] +authors: [Christoph Huber-Huber] date: 2023-05-12 --- - # Should I use t or F values for cluster-based permutation tests? Both t and F distributions are interchangeable for a two-sample setting. In this setting, the F value is simply the t value to the power of two: ```F = t^2```. -Cluster-based permutation tests have originally been used with a t-test statistic (Maris & Oostenveld, 2007, in J. of Neurosci. Methods) but their implementation in fieldtrip allows to use any other statistic function in addition to the common [ft_statfun_depsamplesT](/reference/statfun/ft_statfun_depsamplesT) and [ft_statfun_indepsamplesT](/reference/statfun/ft_statfun_indepsamplesT), such as [ft_statfun_depsamplesFunivariate](/reference/statfun/ft_statfun_depsamplesFunivariate) and [ft_statfun_indepsamplesF](/reference/statfun/ft_statfun_indepsamplesF). Using F values instead of t values for cluster-based permutation tests looks like a good opportunity to test for interaction effects and one might think that the results are equivalent to their t-test version. This is, however, not the case as will be explained below and it will finally be recommended to use the t statistic wherever possible in order to maintain the statistical properties of the test (in terms of power). - +Cluster-based permutation tests have originally been used with a t-test statistic (Maris & Oostenveld, 2007, in J. of Neurosci. Methods) but their implementation in FieldTrip allows to use any other statistic function in addition to the common [ft_statfun_depsamplesT](/reference/statfun/ft_statfun_depsamplesT) and [ft_statfun_indepsamplesT](/reference/statfun/ft_statfun_indepsamplesT), such as [ft_statfun_depsamplesFunivariate](/reference/statfun/ft_statfun_depsamplesFunivariate) and [ft_statfun_indepsamplesF](/reference/statfun/ft_statfun_indepsamplesF). Using F values instead of t values for cluster-based permutation tests looks like a good opportunity to test for interaction effects and one might think that the results are equivalent to their t-test version. This is, however, not the case as will be explained below and it will finally be recommended to use the t statistic wherever possible in order to maintain the statistical properties of the test (in terms of power). ## The decisive step in cluster-based permutation testing: computing the cluster mass Cluster-based permutation testing involves calculating the test statistic (t-value, F-value, etc.) on so-called random partitions of the data (for details see [Cluster-based permutation tests on event related fields](/tutorial/cluster_permutation_timelock)). Calculating the test statistic for a cluster involves the step of computing the summary statistic for the whole cluster, which usually is the _cluster mass_, but could in theory be any other way of summarising the test statistics across contiguous points of your data in time and space that are above a certain threshold value. The cluster mass is simply the sum of all the statistic values across the cluster. The concept has been introduced in work with structural MRI data (Bullmore et al., 1999, in IEEE Transactions on Medical Imaging). - ## The cluster mass destroys the equivalence between t and F distributions and makes them lead to different p-values The p-value is the proportion of the null distribution with a _more extreme_ stats value than the obtained one (in the case of one-tailed tests it is about _larger_ or _smaller_ values). Creating the null distribution from the random participants usually involves calculating the cluster mass which consists in summing up the statistic values of each point in time and space for a cluster. For a single value, ```t^2 = F```. However, the sum of a set of t-values taken to the power of two does not correspond anymore to the same set of F values, because ```(sum(t_1, t_2, ..., t_n))^2 != sum(t_1^2, t_2^2, ..., t_n^2) == sum(F_1, F_2, ..., F_n)```. Thus, the null distribution based on t-values is different from the null distribution based on F-values. This difference can lead to a significant result for the t-value version but not for the F-value version. The result from the F-value version will usually be more conservative, i.e. you will be less likely to conclude that your experimental conditions differ significantly from each other. - ## Conclusion: Use the t values or make the F values equivalent Obtaining different p-values in two procedures which are supposed to be mathematically equivalent and lead to different results only because of the behaviour of an arbitrary summary function, such as the cluster mass, leads to the question of which the two procedures is to be preferred. Given that cluster-based permutation testing has originally been used with t-values and most of the studies have used the cluster mass with t-values, it is highly recommended to stick to the t-test version in order to maintain comparability to previous studies. In practice, this recommendation means: diff --git a/faq/sticking_out.md b/faq/sticking_out.md index a328a37ca..0ef67f29a 100644 --- a/faq/sticking_out.md +++ b/faq/sticking_out.md @@ -1,6 +1,7 @@ --- title: Is it OK for vertices/dipoles to stick out of the volume conductor? -tags: [faq, sourcemodel, bem] +category: faq +tags: [sourcemodel, bem] --- # Is it OK for vertices/dipoles to stick out of the volume conductor? diff --git a/faq/structuresensor.md b/faq/structuresensor.md index 81b975270..64bcde2f8 100644 --- a/faq/structuresensor.md +++ b/faq/structuresensor.md @@ -1,6 +1,7 @@ --- title: Should I use a Polhemus or a Structure Sensor to record electrode positions? -tags: [faq, electrode, polhemus, structure-sensor] +category: faq +tags: [electrode, polhemus, structure-sensor] --- # Should I use a Polhemus or a Structure Sensor to record electrode positions? diff --git a/faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this.md b/faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this.md index ae1b60e5e..d361b7e3a 100644 --- a/faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this.md +++ b/faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this.md @@ -1,6 +1,7 @@ --- title: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this? -tags: [faq, ica, data, crash, databrowser, surf, topoplot, topo] +category: faq +tags: [ica, data, crash, databrowser, surf, topoplot, topo] --- # The databrowser crashes and destroys the whole MATLAB session, how can I resolve this? diff --git a/faq/timefreqtradeoff.md b/faq/timefreqtradeoff.md index 79dad6e8f..9cf4a030b 100644 --- a/faq/timefreqtradeoff.md +++ b/faq/timefreqtradeoff.md @@ -1,6 +1,7 @@ --- title: What is meant by time-frequency trade off? -tags: [faq, freq] +category: faq +tags: [freq] --- # What is meant by time-frequency trade-off? diff --git a/faq/triggers.md b/faq/triggers.md index 2e87a6317..cb7e4cd9b 100644 --- a/faq/triggers.md +++ b/faq/triggers.md @@ -1,6 +1,7 @@ --- title: How can I check or decipher the sequence of triggers in my data? -tags: [faq, trigger, trialfun, preprocessing] +category: faq +tags: [trigger, trialfun, preprocessing] --- # How can I check or decipher the sequence of triggers in my data? diff --git a/faq/units.md b/faq/units.md index 7a5c81e65..a9b53cec0 100644 --- a/faq/units.md +++ b/faq/units.md @@ -1,6 +1,7 @@ --- title: What are the units of the data and of the derived results? -tags: [faq] +category: faq +tags: [units] --- # What are the units of the data and of the derived results? diff --git a/faq/video.md b/faq/video.md index fce3a23ae..f8876ed8a 100644 --- a/faq/video.md +++ b/faq/video.md @@ -1,6 +1,7 @@ --- title: Are the FieldTrip lectures available on video? -tags: [faq, video] +category: faq +tags: [video] --- # Are the FieldTrip lectures available on video? diff --git a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis.md b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis.md index 2b757ed16..259d7f6aa 100644 --- a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis.md +++ b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmconvol_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: What are the differences between the old and the new implementation of 'mtmconvol' in ft_freqanalyis? -tags: [faq, freq, mtmconvol] +category: faq +tags: [freq, mtmconvol] --- # What are the differences between the old and the new implementation of 'mtmconvol' in ft_freqanalyis? diff --git a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmfft_in_ft_freqanalyis.md b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmfft_in_ft_freqanalyis.md index c827e0eaa..c3ea0410b 100644 --- a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmfft_in_ft_freqanalyis.md +++ b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_mtmfft_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: What are the differences between the old and the new implementation of 'mtmftt' in ft_freqanalyis? -tags: [faq, freq, mtmfft] +category: faq +tags: [freq, mtmfft] --- # What are the differences between the old and the new implementation of 'mtmftt' in ft_freqanalyis? diff --git a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_wavelet_formerly_wltconvol_in_ft_freqanalyis.md b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_wavelet_formerly_wltconvol_in_ft_freqanalyis.md index 9c42538e8..618bd0414 100644 --- a/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_wavelet_formerly_wltconvol_in_ft_freqanalyis.md +++ b/faq/what_are_the_differences_between_the_old_and_the_new_implementation_of_wavelet_formerly_wltconvol_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: What are the differences between the old and the new implementation of 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? -tags: [faq, freq, wavelet] +category: faq +tags: [freq, wavelet] --- # What are the differences between the old and the new implementation of 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? diff --git a/faq/what_are_the_different_approaches_i_can_take_for_distributed_computing.md b/faq/what_are_the_different_approaches_i_can_take_for_distributed_computing.md index ba1bf98d3..e15378aa8 100644 --- a/faq/what_are_the_different_approaches_i_can_take_for_distributed_computing.md +++ b/faq/what_are_the_different_approaches_i_can_take_for_distributed_computing.md @@ -1,6 +1,7 @@ --- title: What are the different approaches I can take for distributed computing? -tags: [faq, qsub, parfor, distcomp, matlab] +category: faq +tags: [qsub, parfor, distcomp, matlab] --- # What are the different approaches I can take for distributed computing? diff --git a/faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for.md b/faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for.md index b36b32fea..7eca1dc80 100644 --- a/faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for.md +++ b/faq/what_are_the_different_neuromag_and_yokogawa_layouts_good_for.md @@ -1,6 +1,7 @@ --- title: What are the different Neuromag/Elekta/Megin and Yokogawa layouts good for? -tags: [faq, layout, plotting] +category: faq +tags: [layout, plotting] --- # What are the different Neuromag/Elekta/Megin and Yokogawa layouts good for? diff --git a/faq/what_convention_is_used_to_define_absolute_phase_in_mtmconvol_wavelet_and_mtmfft.md b/faq/what_convention_is_used_to_define_absolute_phase_in_mtmconvol_wavelet_and_mtmfft.md index a8c9d94b0..7e944f205 100644 --- a/faq/what_convention_is_used_to_define_absolute_phase_in_mtmconvol_wavelet_and_mtmfft.md +++ b/faq/what_convention_is_used_to_define_absolute_phase_in_mtmconvol_wavelet_and_mtmfft.md @@ -1,6 +1,7 @@ --- title: What convention is used to define absolute phase in 'mtmconvol', 'wavelet' and 'mtmfft'? -tags: [faq, freq, mtmconvol, wavelet, mtmfft, phase] +category: faq +tags: [freq, mtmconvol, wavelet, mtmfft, phase] --- # What convention is used to define absolute phase in 'mtmconvol', 'wavelet' and 'mtmfft'? diff --git a/faq/what_does_a_typical_call_to_a_fieldtrip_function_look_like.md b/faq/what_does_a_typical_call_to_a_fieldtrip_function_look_like.md index 453f9fe22..575f42d84 100644 --- a/faq/what_does_a_typical_call_to_a_fieldtrip_function_look_like.md +++ b/faq/what_does_a_typical_call_to_a_fieldtrip_function_look_like.md @@ -1,6 +1,7 @@ --- title: What does a typical call to a FieldTrip function look like? -tags: [faq, datatype, function] +category: faq +tags: [datatype, function] --- # What does a typical call to a FieldTrip function look like? @@ -11,4 +12,4 @@ All high-level FieldTrip functions take a configuration input structure as first dataout = functionname(cfg, datain, ...); % e.g., ft_freqanalysis functionname(cfg, datain, ...); % e.g., plotting functions -Type 'help functionname' to see which input arguments (cfg.xxx) ought to be defined before calling the function. The _datain_ and _dataout_ arguments to all FieldTrip main functions can be categorized in a limited number of data types, all of which are structures with a characteristic set of fields. The different datatypes are described [here](/faq/how_are_the_various_data_structures_defined). +Type `help functionname` to see which input arguments (cfg.xxx) ought to be defined before calling the function. The _datain_ and _dataout_ arguments to all FieldTrip main functions can be categorized in a limited number of data types, all of which are structures with a characteristic set of fields. The different datatypes are described [here](/faq/how_are_the_various_data_structures_defined). diff --git a/faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean.md b/faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean.md index cbfb57087..a63df1693 100644 --- a/faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean.md +++ b/faq/what_does_padding_not_sufficient_for_requested_frequency_resolution_mean.md @@ -1,6 +1,7 @@ --- title: What does "padding not sufficient for requested frequency resolution" mean? -tags: [faq, freq] +category: faq +tags: [freq] --- # What does "padding not sufficient for requested frequency resolution" mean? diff --git a/faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software.md b/faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software.md index ec651bac0..1b22373b1 100644 --- a/faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software.md +++ b/faq/what_is_a_good_way_to_save_images_for_later_processing_in_other_software.md @@ -1,6 +1,7 @@ --- title: What is a good way to save images for later processing in other software? -tags: [faq, plotting] +category: faq +tags: [plotting] --- # What is a good way to save images for later processing in other software? diff --git a/faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue.md b/faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue.md index 2b76c025e..8e07b58f0 100644 --- a/faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue.md +++ b/faq/what_is_the_conductivity_of_the_brain_csf_skull_and_skin_tissue.md @@ -1,6 +1,7 @@ --- title: What is the conductivity of the brain, CSF, skull and skin tissue? -tags: [faq, headmodel, source] +category: faq +tags: [headmodel, source] --- # What is the conductivity of the brain, CSF, skull and skin tissue? diff --git a/faq/what_is_the_difference_between_coherence_and_coherency.md b/faq/what_is_the_difference_between_coherence_and_coherency.md index 2e8110ad1..dd345e942 100644 --- a/faq/what_is_the_difference_between_coherence_and_coherency.md +++ b/faq/what_is_the_difference_between_coherence_and_coherency.md @@ -1,6 +1,7 @@ --- title: What is the difference between coherence and coherency? -tags: [faq, coherence] +category: faq +tags: [coherence] --- # What is the difference between coherence and coherency? diff --git a/faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting.md b/faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting.md index 845bde071..14f12dd65 100644 --- a/faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting.md +++ b/faq/what_is_the_format_of_the_layout_file_which_is_used_for_plotting.md @@ -1,6 +1,7 @@ --- title: What is the format of the layout file which is used for plotting? -tags: [faq, layout, plotting] +category: faq +tags: [layout, plotting] --- # What is the format of the layout file which is used for plotting? diff --git a/faq/what_is_the_idea_behind_statistical_inference_at_the_second-level.md b/faq/what_is_the_idea_behind_statistical_inference_at_the_second-level.md index 1d831f3cd..d487ee285 100644 --- a/faq/what_is_the_idea_behind_statistical_inference_at_the_second-level.md +++ b/faq/what_is_the_idea_behind_statistical_inference_at_the_second-level.md @@ -1,6 +1,7 @@ --- title: What is the idea behind statistical inference at the second-level? -tags: [faq, statistics, cluster] +category: faq +tags: [statistics, cluster] --- # What is the idea behind statistical inference at the second-level? diff --git a/faq/what_is_the_plotting_convention_for_anatomical_mris.md b/faq/what_is_the_plotting_convention_for_anatomical_mris.md index 978906b9a..048d882b7 100644 --- a/faq/what_is_the_plotting_convention_for_anatomical_mris.md +++ b/faq/what_is_the_plotting_convention_for_anatomical_mris.md @@ -1,6 +1,7 @@ --- title: What is the plotting convention for anatomical MRIs? -tags: [faq, anatomical, mri] +category: faq +tags: [anatomical, mri] --- # What is the plotting convention for anatomical MRIs? diff --git a/faq/what_is_the_relation_between_events_such_as_triggers_and_trials.md b/faq/what_is_the_relation_between_events_such_as_triggers_and_trials.md index a796836ed..cd3b9a5da 100644 --- a/faq/what_is_the_relation_between_events_such_as_triggers_and_trials.md +++ b/faq/what_is_the_relation_between_events_such_as_triggers_and_trials.md @@ -1,6 +1,7 @@ --- title: What is the relation between "events" (such as triggers) and "trials"? -tags: [faq, preprocessing, trialfun] +category: faq +tags: [preprocessing, trialfun] --- # What is the relation between "events" (such as triggers) and "trials"? diff --git a/faq/what_kind_of_filters_can_i_apply_to_my_data.md b/faq/what_kind_of_filters_can_i_apply_to_my_data.md index 9e77c0f9c..567636eed 100644 --- a/faq/what_kind_of_filters_can_i_apply_to_my_data.md +++ b/faq/what_kind_of_filters_can_i_apply_to_my_data.md @@ -1,6 +1,7 @@ --- title: What kind of filters can I apply to my data? -tags: [faq, preprocessing, timelock, freq, artifact, filter] +category: faq +tags: [preprocessing, timelock, freq, artifact, filter] --- # What kind of filters can I apply to my data? diff --git a/faq/what_kind_of_volume_conduction_models_are_implemented.md b/faq/what_kind_of_volume_conduction_models_are_implemented.md index 853ec1515..f82a52b3b 100644 --- a/faq/what_kind_of_volume_conduction_models_are_implemented.md +++ b/faq/what_kind_of_volume_conduction_models_are_implemented.md @@ -1,6 +1,7 @@ --- title: What kind of volume conduction models of the head (head models) are implemented? -tags: [faq, headmodel, source] +category: faq +tags: [headmodel, source] --- # What kind of volume conduction models of the head (head models) are implemented? diff --git a/faq/where_can_i_find_the_dipoli_command-line_executable.md b/faq/where_can_i_find_the_dipoli_command-line_executable.md index 5d4848a45..0409f132b 100644 --- a/faq/where_can_i_find_the_dipoli_command-line_executable.md +++ b/faq/where_can_i_find_the_dipoli_command-line_executable.md @@ -1,6 +1,7 @@ --- title: Where can I find the dipoli command-line executable? -tags: [faq, headmodel, source, matlab] +category: faq +tags: [headmodel, source, matlab] --- # Where can I find the dipoli command-line executable? diff --git a/faq/which_version_of_fieldtrip_should_i_download.md b/faq/which_version_of_fieldtrip_should_i_download.md index f0f78f793..4d16c8f28 100644 --- a/faq/which_version_of_fieldtrip_should_i_download.md +++ b/faq/which_version_of_fieldtrip_should_i_download.md @@ -1,6 +1,7 @@ --- title: Which version of FieldTrip should I download? -tags: [faq, download, release] +category: faq +tags: [download, release] redirect_from: - /faq/which_version_of_fieldtrip_should_i_download_from_the_ftp_server/ --- diff --git a/faq/why_am_i_not_allowed_to_post_to_the_discussion_list.md b/faq/why_am_i_not_allowed_to_post_to_the_discussion_list.md index 9f99fcb5d..373edbfe9 100644 --- a/faq/why_am_i_not_allowed_to_post_to_the_discussion_list.md +++ b/faq/why_am_i_not_allowed_to_post_to_the_discussion_list.md @@ -1,6 +1,7 @@ --- title: Why am I not allowed to post to the discussion list? -tags: [faq, email] +category: faq +tags: [email] --- # Why am I not allowed to post to the discussion list? diff --git a/faq/why_am_i_not_getting_exact_integer_frequencies.md b/faq/why_am_i_not_getting_exact_integer_frequencies.md index 4ce4b6b50..7545cbc99 100644 --- a/faq/why_am_i_not_getting_exact_integer_frequencies.md +++ b/faq/why_am_i_not_getting_exact_integer_frequencies.md @@ -1,6 +1,7 @@ --- title: Why am I not getting integer frequencies? -tags: [faq, preprocessing, freq] +category: faq +tags: [preprocessing, freq] --- # Why am I not getting integer frequencies? diff --git a/faq/why_am_i_not_receiving_emails_from_the_discussion_list.md b/faq/why_am_i_not_receiving_emails_from_the_discussion_list.md index 6c0f10f71..5c5052e87 100644 --- a/faq/why_am_i_not_receiving_emails_from_the_discussion_list.md +++ b/faq/why_am_i_not_receiving_emails_from_the_discussion_list.md @@ -1,6 +1,7 @@ --- title: Why am I not receiving emails from the discussion list? -tags: [faq, email] +category: faq +tags: [email] --- # Why am I not receiving emails from the discussion list? diff --git a/faq/why_am_i_receiving_warnings_about_too_many_bouncing_emails.md b/faq/why_am_i_receiving_warnings_about_too_many_bouncing_emails.md index c04f55ece..40a886e9d 100644 --- a/faq/why_am_i_receiving_warnings_about_too_many_bouncing_emails.md +++ b/faq/why_am_i_receiving_warnings_about_too_many_bouncing_emails.md @@ -1,6 +1,7 @@ --- title: Why am I receiving warnings about too many bouncing emails? -tags: [faq, email] +category: faq +tags: [email] --- # Why am I receiving warnings about too many bouncing emails? diff --git a/faq/why_are_so_many_of_the_interesting_functions_in_the_private_directories.md b/faq/why_are_so_many_of_the_interesting_functions_in_the_private_directories.md index 712c6390a..8fbfab09d 100644 --- a/faq/why_are_so_many_of_the_interesting_functions_in_the_private_directories.md +++ b/faq/why_are_so_many_of_the_interesting_functions_in_the_private_directories.md @@ -1,6 +1,7 @@ --- title: Why are so many of the interesting functions in the private directories? -tags: [faq, function, matlab] +category: faq +tags: [function, matlab] --- # Why are so many of the interesting functions in the private directories? diff --git a/faq/why_are_the_fileio_functions_stateless_does_the_fseek_not_make_them_very_slow.md b/faq/why_are_the_fileio_functions_stateless_does_the_fseek_not_make_them_very_slow.md index 404f10e50..b5d71a3c2 100644 --- a/faq/why_are_the_fileio_functions_stateless_does_the_fseek_not_make_them_very_slow.md +++ b/faq/why_are_the_fileio_functions_stateless_does_the_fseek_not_make_them_very_slow.md @@ -1,6 +1,7 @@ --- title: Why are the fileio functions stateless, does the fseek not make them very slow? -tags: [faq, memory, matlab] +category: faq +tags: [memory, matlab] --- # Why are the fileio functions stateless, does the fseek not make them very slow? diff --git a/faq/why_are_there_multiple_neighbour_templates_for_the_neuromag306_system.md b/faq/why_are_there_multiple_neighbour_templates_for_the_neuromag306_system.md index 72d22fa73..606bd80b2 100644 --- a/faq/why_are_there_multiple_neighbour_templates_for_the_neuromag306_system.md +++ b/faq/why_are_there_multiple_neighbour_templates_for_the_neuromag306_system.md @@ -1,6 +1,7 @@ --- title: Why are there multiple neighbour templates for the Neuromag306 system? -tags: [faq, neuromag, template, warning] +category: faq +tags: [neuromag, template, warning] --- # Why are there multiple neighbour templates for the Neuromag306 system? diff --git a/faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot.md b/faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot.md index 2f2a38cae..c39aedadb 100644 --- a/faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot.md +++ b/faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot.md @@ -1,6 +1,7 @@ --- title: Why does my anatomical MRI show upside-down when plotting it with ft_sourceplot? -tags: [faq, anatomical, mri] +category: faq +tags: [anatomical, mri] --- # Why does my anatomical MRI show upside-down when plotting it with ft_sourceplot? diff --git a/faq/why_does_my_eegheadmodel_look_funny.md b/faq/why_does_my_eegheadmodel_look_funny.md index 2d6bc6cbb..d54032b4c 100644 --- a/faq/why_does_my_eegheadmodel_look_funny.md +++ b/faq/why_does_my_eegheadmodel_look_funny.md @@ -1,6 +1,7 @@ --- title: Why does my EEG headmodel look funny? -tags: [faq, headmodel] +category: faq +tags: [headmodel] --- # Why does my EEG headmodel look funny? diff --git a/faq/why_does_my_ica_output_contain_complex_numbers.md b/faq/why_does_my_ica_output_contain_complex_numbers.md index f0b201699..2f61ea273 100644 --- a/faq/why_does_my_ica_output_contain_complex_numbers.md +++ b/faq/why_does_my_ica_output_contain_complex_numbers.md @@ -1,6 +1,7 @@ --- title: Why does my ICA output contain complex numbers? -tags: [faq, ica] +category: faq +tags: [ica] --- # Why does my ICA output contain complex numbers? diff --git a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmconvol_in_ft_freqanalyis.md b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmconvol_in_ft_freqanalyis.md index 1677c8c0c..c2e704956 100644 --- a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmconvol_in_ft_freqanalyis.md +++ b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmconvol_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: Why does my output.freq not match my cfg.foi when using 'mtmconvol' in ft_freqanalyis? -tags: [faq, freq, mtmconvol] +category: faq +tags: [freq, mtmconvol] --- # Why does my output.freq not match my cfg.foi when using 'mtmconvol' in ft_freqanalyis? diff --git a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmfft_in_ft_freqanalyis.md b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmfft_in_ft_freqanalyis.md index eb0d53ae7..2b01ede3d 100644 --- a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmfft_in_ft_freqanalyis.md +++ b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_mtmfft_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: Why does my output.freq not match my cfg.foi when using 'mtmfft' in ft_freqanalyis -tags: [faq, freq] +category: faq +tags: [freq] --- # Why does my output.freq not match my cfg.foi when using 'mtmfft' in ft_freqanalyis diff --git a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_wavelet_formerly_wltconvol_in_ft_freqanalyis.md b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_wavelet_formerly_wltconvol_in_ft_freqanalyis.md index 4792d70ec..d0d7a7dd4 100644 --- a/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_wavelet_formerly_wltconvol_in_ft_freqanalyis.md +++ b/faq/why_does_my_output.freq_not_match_my_cfg.foi_when_using_wavelet_formerly_wltconvol_in_ft_freqanalyis.md @@ -1,6 +1,7 @@ --- title: Why does my output.freq not match my cfg.foi when using 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? -tags: [faq, freq, wavelet] +category: faq +tags: [freq, wavelet] --- # Why does my output.freq not match my cfg.foi when using 'wavelet' (formerly 'wltconvol') in ft_freqanalyis? diff --git a/faq/why_does_my_tfr_contain_nans.md b/faq/why_does_my_tfr_contain_nans.md index b0bb7d2b5..ec7939f28 100644 --- a/faq/why_does_my_tfr_contain_nans.md +++ b/faq/why_does_my_tfr_contain_nans.md @@ -1,6 +1,7 @@ --- title: Why does my TFR contain NaNs? -tags: [faq, freq] +category: faq +tags: [freq] --- # Why does my TFR contain NaNs? diff --git a/faq/why_does_my_tfr_look_strange.md b/faq/why_does_my_tfr_look_strange.md index 604075fd7..cee4cc59d 100644 --- a/faq/why_does_my_tfr_look_strange.md +++ b/faq/why_does_my_tfr_look_strange.md @@ -1,6 +1,7 @@ --- title: Why does my TFR look strange (part I, demeaning)? -tags: [faq, mtmconvol, freq, preprocessing, artifact] +category: faq +tags: [mtmconvol, freq, preprocessing, artifact] --- # Why does my TFR look strange (part I, demeaning)? diff --git a/faq/why_does_my_tfr_look_strange_part_ii.md b/faq/why_does_my_tfr_look_strange_part_ii.md index 7ab7a6799..03a754610 100644 --- a/faq/why_does_my_tfr_look_strange_part_ii.md +++ b/faq/why_does_my_tfr_look_strange_part_ii.md @@ -1,6 +1,7 @@ --- title: Why does my TFR look strange (part II, detrending)? -tags: [faq, mtmconvol, freq, preprocessing, artifact, filter] +category: faq +tags: [mtmconvol, freq, preprocessing, artifact, filter] --- # Why does my TFR look strange (part II, detrending)? diff --git a/faq/why_is_fieldtrip_developed_separately_from_eeglab.md b/faq/why_is_fieldtrip_developed_separately_from_eeglab.md index f868cf085..8e4e8fb4c 100644 --- a/faq/why_is_fieldtrip_developed_separately_from_eeglab.md +++ b/faq/why_is_fieldtrip_developed_separately_from_eeglab.md @@ -1,6 +1,7 @@ --- title: Why is FieldTrip developed separately from EEGLAB? -tags: [faq, eeglab] +category: faq +tags: [eeglab] --- # Why is FieldTrip developed separately from EEGLAB? diff --git a/faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git.md b/faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git.md index 8502ba8fa..d095fdf45 100644 --- a/faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git.md +++ b/faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git.md @@ -1,6 +1,7 @@ --- title: Why was FieldTrip maintained in SVN and not in Git? -tags: [faq, development, cvs, svn, git] +category: faq +tags: [development, cvs, svn, git] --- # Why was FieldTrip maintained in SVN and not in Git? diff --git a/faq/why_is_my_message_rejected_from_the_email_discussion_list.md b/faq/why_is_my_message_rejected_from_the_email_discussion_list.md index 165047a92..8cd43b729 100644 --- a/faq/why_is_my_message_rejected_from_the_email_discussion_list.md +++ b/faq/why_is_my_message_rejected_from_the_email_discussion_list.md @@ -1,6 +1,7 @@ --- title: Why is my message rejected from the email discussion list? -tags: [faq, email] +category: faq +tags: [email] --- # Why is my message rejected from the email discussion list? diff --git a/faq/why_is_the_source_model_deformed_or_incorrectly_aligned_after_warping_template.md b/faq/why_is_the_source_model_deformed_or_incorrectly_aligned_after_warping_template.md index 3c972d7cc..325344648 100755 --- a/faq/why_is_the_source_model_deformed_or_incorrectly_aligned_after_warping_template.md +++ b/faq/why_is_the_source_model_deformed_or_incorrectly_aligned_after_warping_template.md @@ -1,6 +1,7 @@ --- title: Why is the source model deformed or incorrectly aligned after warping template? -tags: [faq, sourcemodel, mri, normalization] +category: faq +tags: [sourcemodel, mri, normalization] --- # Why is the source model deformed or incorrectly aligned after warping template? diff --git a/faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter.md b/faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter.md index 0b2617e97..17d35b59f 100644 --- a/faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter.md +++ b/faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter.md @@ -1,6 +1,7 @@ --- title: Why is there a residual 50Hz line-noise component after applying a DFT filter? -tags: [faq, artifact, filter, noise, preprocessing] +category: faq +tags: [artifact, filter, noise, preprocessing] --- # Why is there a residual 50Hz line-noise component after applying a DFT filter? diff --git a/faq/why_is_there_a_rim_around_the_brain_for_which_the_source_reconstruction_is_not_computed.md b/faq/why_is_there_a_rim_around_the_brain_for_which_the_source_reconstruction_is_not_computed.md index 1070519f0..6761857c6 100644 --- a/faq/why_is_there_a_rim_around_the_brain_for_which_the_source_reconstruction_is_not_computed.md +++ b/faq/why_is_there_a_rim_around_the_brain_for_which_the_source_reconstruction_is_not_computed.md @@ -1,6 +1,7 @@ --- title: Why is there a rim around the brain for which the source reconstruction is not computed? -tags: [faq, source] +category: faq +tags: [source] --- # Why is there a rim around the brain for which the source reconstruction is not computed? diff --git a/faq/why_largest_peak_spectrum.md b/faq/why_largest_peak_spectrum.md index 5c73c4103..9359eea75 100644 --- a/faq/why_largest_peak_spectrum.md +++ b/faq/why_largest_peak_spectrum.md @@ -1,6 +1,7 @@ --- title: Why is the largest peak in the spectrum at the frequency which is 1/segment length? -tags: [faq, mtmfft, freq, demean] +category: faq +tags: [mtmfft, freq, demean] --- # Why is the largest peak in the spectrum at the frequency which is 1/segment length? diff --git a/faq/why_should_i_use_an_average_reference_for_eeg_source_reconstruction.md b/faq/why_should_i_use_an_average_reference_for_eeg_source_reconstruction.md index db4004b7f..907aed73f 100644 --- a/faq/why_should_i_use_an_average_reference_for_eeg_source_reconstruction.md +++ b/faq/why_should_i_use_an_average_reference_for_eeg_source_reconstruction.md @@ -1,6 +1,7 @@ --- title: Why should I use an average reference for EEG source reconstruction? -tags: [faq, eeg, reference, source] +category: faq +tags: [eeg, reference, source] --- # Why should I use an average reference for EEG source reconstruction? diff --git a/faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo.md b/faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo.md index 76a3d21a6..77676c6af 100644 --- a/faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo.md +++ b/faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo.md @@ -1,6 +1,7 @@ --- title: Why should I use the cfg.correcttail option when using statistics_montecarlo? -tags: [faq, statistics, cluster] +category: faq +tags: [statistics, cluster] --- # Why should I use the cfg.correcttail option when using statistics_montecarlo? diff --git a/getting_started/1020.md b/getting_started/1020.md index 58e064e91..622dfb7a5 100644 --- a/getting_started/1020.md +++ b/getting_started/1020.md @@ -1,5 +1,6 @@ --- title: Getting started with 20%, 10% and 5% electrode arrangements +category: getting_started tags: [eeg, layout] --- diff --git a/getting_started/animal.md b/getting_started/animal.md index e4835c1d5..fd3478903 100644 --- a/getting_started/animal.md +++ b/getting_started/animal.md @@ -1,5 +1,6 @@ --- title: Getting started with animal electrophysiology data, including spikes +category: getting_started tags: [spike, lfp] --- diff --git a/getting_started/antneuro.md b/getting_started/antneuro.md index f25e89f59..b172ada88 100644 --- a/getting_started/antneuro.md +++ b/getting_started/antneuro.md @@ -1,5 +1,6 @@ --- title: Getting started with ANT-Neuro, ASA and EEProbe data +category: getting_started tags: [dataformat, eeg, ant, asa, eeprobe] --- diff --git a/getting_started/anywave.md b/getting_started/anywave.md index 77feea10a..fdeb4d3ac 100644 --- a/getting_started/anywave.md +++ b/getting_started/anywave.md @@ -1,5 +1,6 @@ --- title: Getting started with AnyWave +category: getting_started tags: [dataformat, anywave] --- diff --git a/getting_started/artinis.md b/getting_started/artinis.md index aa1d1e29a..434b8f213 100644 --- a/getting_started/artinis.md +++ b/getting_started/artinis.md @@ -1,5 +1,6 @@ --- title: Getting started with Artinis NIRS data +category: getting_started tags: [dataformat, nirs, artinis] --- diff --git a/getting_started/audio.md b/getting_started/audio.md index 642e70af2..a6826f9ec 100644 --- a/getting_started/audio.md +++ b/getting_started/audio.md @@ -1,5 +1,6 @@ --- title: Getting started with audio data +category: getting_started tags: [dataformat, audio] --- diff --git a/getting_started/b_alert.md b/getting_started/b_alert.md index 7d71d2d09..384acaf97 100644 --- a/getting_started/b_alert.md +++ b/getting_started/b_alert.md @@ -1,5 +1,6 @@ --- title: Getting started with ABM's B-Alert EEG data +category: getting_started tags: [dataformat, b-alert, balert, abm, x10, x-10, x24, x-24] --- diff --git a/getting_started/babysquid.md b/getting_started/babysquid.md index e7b160162..00028a1e1 100644 --- a/getting_started/babysquid.md +++ b/getting_started/babysquid.md @@ -1,5 +1,6 @@ --- title: Getting started with BabySQUID data +category: getting_started tags: [dataformat, babysquid, meg] --- diff --git a/getting_started/besa.md b/getting_started/besa.md index 2361bb8fe..74616fa70 100644 --- a/getting_started/besa.md +++ b/getting_started/besa.md @@ -1,5 +1,6 @@ --- title: Getting started with BESA data +category: getting_started tags: [dataformat, besa] --- diff --git a/getting_started/bids.md b/getting_started/bids.md index 8b44e48dd..29f3826b7 100644 --- a/getting_started/bids.md +++ b/getting_started/bids.md @@ -1,5 +1,6 @@ --- title: Getting started with BIDS +category: getting_started tags: [dataformat, bids] --- @@ -53,7 +54,7 @@ Using the **[data2bids](/reference/data2bids)** function you can organize your d There are various examples that show how to convert different types of data: -{% include seealso tag1="example" tag2="bids" %} +{% include seealso category="example" tag1="bids" %} ## See also diff --git a/getting_started/bioimage.md b/getting_started/bioimage.md index 8a1a885ef..9629386e0 100644 --- a/getting_started/bioimage.md +++ b/getting_started/bioimage.md @@ -1,5 +1,6 @@ --- title: Getting started with BioImage Suite +category: getting_started tags: [dataformat, bioimagesuite, bioimage, ieeg, ecog, seeg, localization] --- @@ -116,4 +117,4 @@ Once the `.mgrid` file is created, it can be loaded into the BioImage Suite Elec ## Suggested further reading -{% include seealso tag1="tutorial" tag2="ieeg" %} +{% include seealso category="tutorial" tag1="ieeg" %} diff --git a/getting_started/biosemi.md b/getting_started/biosemi.md index 634abfd38..21290d5d1 100644 --- a/getting_started/biosemi.md +++ b/getting_started/biosemi.md @@ -1,5 +1,6 @@ --- title: Getting started with Biosemi BDF data +category: getting_started tags: [dataformat, eeg, biosemi, bdf] --- diff --git a/getting_started/blackrock.md b/getting_started/blackrock.md index 123bbd588..7bdb462fc 100644 --- a/getting_started/blackrock.md +++ b/getting_started/blackrock.md @@ -1,5 +1,6 @@ --- title: Getting started with Blackrock data +category: getting_started tags: [dataformat, blackrock, lfp, spike] --- diff --git a/getting_started/brainvision.md b/getting_started/brainvision.md index 0abfca0fd..5e41a6325 100644 --- a/getting_started/brainvision.md +++ b/getting_started/brainvision.md @@ -1,5 +1,6 @@ --- title: Getting started with BrainVision Analyzer and Easycap +category: getting_started tags: [dataformat, brainvision, easycap, eeg, layout] --- diff --git a/getting_started/bti.md b/getting_started/bti.md index 1c08fc5e7..45510f208 100644 --- a/getting_started/bti.md +++ b/getting_started/bti.md @@ -1,5 +1,6 @@ --- title: Getting started with BTi/4D data +category: getting_started tags: [dataformat, 4d, bti, meg] --- diff --git a/getting_started/cerca.md b/getting_started/cerca.md index 372a4450f..488ac6261 100644 --- a/getting_started/cerca.md +++ b/getting_started/cerca.md @@ -1,5 +1,6 @@ --- title: Getting started with Cerca OPM data +category: getting_started tags: [dataformat, meg, opm, cerca, bids] --- diff --git a/getting_started/ctf.md b/getting_started/ctf.md index 8478e5dab..273729100 100644 --- a/getting_started/ctf.md +++ b/getting_started/ctf.md @@ -1,5 +1,6 @@ --- title: Getting started with CTF data +category: getting_started tags: [dataformat, ctf, meg] --- diff --git a/getting_started/cyberkinetics.md b/getting_started/cyberkinetics.md index 833faeb13..9ed138896 100644 --- a/getting_started/cyberkinetics.md +++ b/getting_started/cyberkinetics.md @@ -1,5 +1,6 @@ --- title: Getting started with Cyberkinetics data +category: getting_started tags: [dataformat, cyberkinetics, blackrock, lfp, spike] --- diff --git a/getting_started/edf.md b/getting_started/edf.md index b85f9f5a6..b979c68ee 100644 --- a/getting_started/edf.md +++ b/getting_started/edf.md @@ -1,5 +1,6 @@ --- title: Getting started with EDF (European Data Format) data +category: getting_started tags: [dataformat, edf, eeg] --- diff --git a/getting_started/eeglab.md b/getting_started/eeglab.md index 7945de28a..4d64355ff 100644 --- a/getting_started/eeglab.md +++ b/getting_started/eeglab.md @@ -1,5 +1,6 @@ --- title: Getting started with EEGLAB +category: getting_started tags: [dataformat, eeglab, eeg] --- diff --git a/getting_started/egi.md b/getting_started/egi.md index f903acb00..ba7cda744 100644 --- a/getting_started/egi.md +++ b/getting_started/egi.md @@ -1,5 +1,6 @@ --- title: Getting started with EGI/Philips/Magstim data +category: getting_started tags: [dataformat, egi, eeg] --- diff --git a/getting_started/eyelink.md b/getting_started/eyelink.md index 4df25ac6f..85ca2a7eb 100644 --- a/getting_started/eyelink.md +++ b/getting_started/eyelink.md @@ -1,5 +1,6 @@ --- title: Getting started with SR-Research EyeLink eye-tracker data +category: getting_started tags: [dataformat, eyelink] --- diff --git a/getting_started/fieldline.md b/getting_started/fieldline.md index 4b96c7771..03e66124f 100644 --- a/getting_started/fieldline.md +++ b/getting_started/fieldline.md @@ -1,5 +1,6 @@ --- title: Getting started with FieldLine OPM data +category: getting_started tags: [dataformat, meg, opm, opm-mediannerve, fieldline] --- diff --git a/getting_started/fmri.md b/getting_started/fmri.md index 8ae4a5e95..f937ae82d 100644 --- a/getting_started/fmri.md +++ b/getting_started/fmri.md @@ -1,5 +1,6 @@ --- title: Getting started with fMRI timeseries data +category: getting_started tags: [dataformat, fmri] --- diff --git a/getting_started/hitachi.md b/getting_started/hitachi.md index 68b813d68..d8615c9a6 100644 --- a/getting_started/hitachi.md +++ b/getting_started/hitachi.md @@ -1,5 +1,6 @@ --- title: Getting started with Hitachi NIRS data +category: getting_started tags: [dataformat, nirs, hitachi] --- diff --git a/getting_started/homer.md b/getting_started/homer.md index db694bc53..34bf56713 100644 --- a/getting_started/homer.md +++ b/getting_started/homer.md @@ -1,5 +1,6 @@ --- title: Getting started with Homer +category: getting_started tags: [dataformat, homer, nirs] --- diff --git a/getting_started/human_ecog.md b/getting_started/human_ecog.md index 39124c094..bd0c6dcf3 100644 --- a/getting_started/human_ecog.md +++ b/getting_started/human_ecog.md @@ -1,5 +1,6 @@ --- title: Getting started with human ECoG data +category: getting_started tags: [ieeg, ecog, seeg] --- diff --git a/getting_started/limo.md b/getting_started/limo.md index 9acf04749..4449873f2 100644 --- a/getting_started/limo.md +++ b/getting_started/limo.md @@ -1,5 +1,6 @@ --- title: Getting started with LIMO MEEG +category: getting_started tags: [statistics, glm, limo, eeg, meg] --- diff --git a/getting_started/loreta.md b/getting_started/loreta.md index 0764cd78b..586f90351 100644 --- a/getting_started/loreta.md +++ b/getting_started/loreta.md @@ -1,5 +1,6 @@ --- title: Getting started with LORETA +category: getting_started tags: [dataformat, loreta] --- diff --git a/getting_started/meshlab.md b/getting_started/meshlab.md index b328c23e1..d0ae9060c 100644 --- a/getting_started/meshlab.md +++ b/getting_started/meshlab.md @@ -1,5 +1,6 @@ --- title: Getting started with MeshLab +category: getting_started tags: [mesh, headmodel, meshlab] --- diff --git a/getting_started/mne.md b/getting_started/mne.md index a7dce3d33..4328c2ba8 100644 --- a/getting_started/mne.md +++ b/getting_started/mne.md @@ -1,5 +1,6 @@ --- title: Getting started with MNE(-python) +category: getting_started tags: [dataformat, mne, eeg, meg] --- diff --git a/getting_started/neuralynx.md b/getting_started/neuralynx.md index 602018e0b..c426f3f27 100644 --- a/getting_started/neuralynx.md +++ b/getting_started/neuralynx.md @@ -1,5 +1,6 @@ --- title: Getting started with Neuralynx data +category: getting_started tags: [dataformat, neuralynx, lfp, spike] --- diff --git a/getting_started/neuralynx_fcdc.md b/getting_started/neuralynx_fcdc.md index 49b3ffee4..22fc990ea 100644 --- a/getting_started/neuralynx_fcdc.md +++ b/getting_started/neuralynx_fcdc.md @@ -1,5 +1,6 @@ --- title: Getting started with Neuralynx data recorded at the Donders Institute +category: getting_started tags: [dataformat, neuralynx, lfp, spike] --- diff --git a/getting_started/neuromag.md b/getting_started/neuromag.md index d6cc2b89c..9c71be7b7 100644 --- a/getting_started/neuromag.md +++ b/getting_started/neuromag.md @@ -1,5 +1,6 @@ --- title: Getting started with Neuromag/Elekta/Megin data +category: getting_started tags: [dataformat, neuromag, elekta, megin, meg] --- diff --git a/getting_started/nicolet.md b/getting_started/nicolet.md index fbea219b2..3c2fa03c0 100644 --- a/getting_started/nicolet.md +++ b/getting_started/nicolet.md @@ -1,5 +1,6 @@ --- title: Getting started with Nicolet data +category: getting_started tags: [dataformat, nicolet, eeg] --- diff --git a/getting_started/nirx.md b/getting_started/nirx.md index 0657d7d0c..7d69c1827 100644 --- a/getting_started/nirx.md +++ b/getting_started/nirx.md @@ -1,5 +1,6 @@ --- title: Getting started with NIRx NIRS data +category: getting_started tags: [dataformat, nirs, nirx] --- diff --git a/getting_started/nwb.md b/getting_started/nwb.md index 9f9db1b73..6aabb6bd0 100644 --- a/getting_started/nwb.md +++ b/getting_started/nwb.md @@ -1,5 +1,6 @@ --- title: Getting started with Neurodata Without Borders (NWB) data +category: getting_started tags: [dataformat, spike, nwb] --- diff --git a/getting_started/opm_fil.md b/getting_started/opm_fil.md index 92548b932..dfd9911c9 100644 --- a/getting_started/opm_fil.md +++ b/getting_started/opm_fil.md @@ -1,5 +1,6 @@ --- title: Getting started with OPM data recorded at the FIL +category: getting_started tags: [dataformat, meg, opm, fil] --- diff --git a/getting_started/paraview.md b/getting_started/paraview.md index 790e110c6..d70e9a316 100644 --- a/getting_started/paraview.md +++ b/getting_started/paraview.md @@ -1,5 +1,6 @@ --- title: Getting started with ParaView +category: getting_started tags: [mesh, segmentation, volume, headmodel, paraview] --- diff --git a/getting_started/plexon.md b/getting_started/plexon.md index 9a4688030..c45ab3008 100644 --- a/getting_started/plexon.md +++ b/getting_started/plexon.md @@ -1,5 +1,6 @@ --- title: Getting started with Plexon data +category: getting_started tags: [dataformat, plexon, lfp, spike] --- diff --git a/getting_started/realtime.md b/getting_started/realtime.md index 4dd905c9f..6c17a774c 100644 --- a/getting_started/realtime.md +++ b/getting_started/realtime.md @@ -1,6 +1,7 @@ --- title: Getting started with real-time analysis for BCI/neurofeedback -tags: [realtime, example] +category: getting_started +tags: [realtime] --- # Getting started with real-time analysis for BCI/neurofeedback diff --git a/getting_started/realtime_headlocalizer.md b/getting_started/realtime_headlocalizer.md index d73e54d1b..4f746c1e3 100644 --- a/getting_started/realtime_headlocalizer.md +++ b/getting_started/realtime_headlocalizer.md @@ -1,5 +1,6 @@ --- title: Getting started with real-time head localization in MEG +category: getting_started tags: [realtime, meg] --- diff --git a/getting_started/ricoh.md b/getting_started/ricoh.md index 19e3dfff0..fea6a0107 100644 --- a/getting_started/ricoh.md +++ b/getting_started/ricoh.md @@ -1,5 +1,6 @@ --- title: Getting started with Ricoh data +category: getting_started tags: [dataformat, ricoh, meg] --- diff --git a/getting_started/seg3d.md b/getting_started/seg3d.md index 279812212..758dd20b7 100644 --- a/getting_started/seg3d.md +++ b/getting_started/seg3d.md @@ -1,5 +1,6 @@ --- title: Getting started with Seg3D +category: getting_started tags: [segmentation, volume, headmodel, seg3d] --- diff --git a/getting_started/shimadzu.md b/getting_started/shimadzu.md index e6274ac9b..153dce5a5 100644 --- a/getting_started/shimadzu.md +++ b/getting_started/shimadzu.md @@ -1,5 +1,6 @@ --- title: Getting started with Shimadzu NIRS data +category: getting_started tags: [dataformat, nirs, shimadzu] --- diff --git a/getting_started/simnibs.md b/getting_started/simnibs.md index f43a690db..fe4520791 100644 --- a/getting_started/simnibs.md +++ b/getting_started/simnibs.md @@ -1,5 +1,6 @@ --- title: Getting started with SimNIBS +category: getting_started tags: [mesh, segmentation, volume, headmodel, simnibs] --- diff --git a/getting_started/snirf.md b/getting_started/snirf.md index 441e59947..3936e8ddb 100644 --- a/getting_started/snirf.md +++ b/getting_started/snirf.md @@ -1,5 +1,6 @@ --- title: Getting started with SNIRF data +category: getting_started tags: [dataformat, snirf, nirs] --- diff --git a/getting_started/spm.md b/getting_started/spm.md index d87ba887b..c9ece39c3 100644 --- a/getting_started/spm.md +++ b/getting_started/spm.md @@ -1,5 +1,6 @@ --- title: Getting started with SPM +category: getting_started tags: [spm] --- diff --git a/getting_started/tmsi.md b/getting_started/tmsi.md index b8e2a6584..c58c5996b 100644 --- a/getting_started/tmsi.md +++ b/getting_started/tmsi.md @@ -1,5 +1,6 @@ --- title: Getting started with TMSi data +category: getting_started tags: [dataformat, tmsi, eeg] --- diff --git a/getting_started/video.md b/getting_started/video.md index 63a322cdc..a91813069 100644 --- a/getting_started/video.md +++ b/getting_started/video.md @@ -1,5 +1,6 @@ --- title: Getting started with video data +category: getting_started tags: [dataformat, video] --- diff --git a/getting_started/xsens.md b/getting_started/xsens.md index 5560434cf..6b064fb12 100644 --- a/getting_started/xsens.md +++ b/getting_started/xsens.md @@ -1,5 +1,6 @@ --- title: Getting started with XSens motion capture data +category: getting_started tags: [dataformat, xsens, motion] --- diff --git a/getting_started/yokogawa.md b/getting_started/yokogawa.md index 2432b8315..22a688650 100644 --- a/getting_started/yokogawa.md +++ b/getting_started/yokogawa.md @@ -1,5 +1,6 @@ --- title: Getting started with Yokogawa data +category: getting_started tags: [dataformat, meg, yokogawa, coordinate] --- diff --git a/reference.md b/reference.md index 83659c7ac..85c52fffb 100644 --- a/reference.md +++ b/reference.md @@ -9,7 +9,7 @@ This page links to the reference documentation for the most important FieldTrip A complete overview with all configuration options is available in the [configuration index](/configuration). -Note that this reference documentation is identical to the help text that is displayed in MATLAB when you type "help functionname". +Note that this reference documentation is identical to the help text that is displayed in MATLAB when you type `help functionname`. ## Description of the data structures diff --git a/tutorial/artifacts.md b/tutorial/artifacts.md index 5c8243e94..749f9ecee 100644 --- a/tutorial/artifacts.md +++ b/tutorial/artifacts.md @@ -1,6 +1,7 @@ --- title: Introduction on dealing with artifacts -tags: [tutorial, artifact, preprocessing, eeg, meg] +category: tutorial +tags: [artifact, preprocessing, eeg, meg] --- # Introduction on dealing with artifacts @@ -113,10 +114,10 @@ The following example scripts explain how to use ICA to detect and remove [EOG]( Following this short introduction on dealing with artifacts in FieldTrip, you can continue with the [visual artifact rejection](/tutorial/visual_artifact_rejection) and the [automatic artifact rejection](/tutorial/automatic_artifact_rejection) tutorials. More information on dealing with artifacts can also be found in some example scripts and frequently asked questions. Furthermore, this topic is frequently discussed on the [email discussion list](/discussion_list). -#### Example scripts +### Example scripts -{% include seealso tag1="artifact" tag2="example" %} +{% include seealso category="example" tag1="artifact" %} -#### Frequently asked questions +### Frequently asked questions -{% include seealso tag1="artifact" tag2="faq" %} +{% include seealso category="faq" tag1="artifact" %} diff --git a/tutorial/automatic_artifact_rejection.md b/tutorial/automatic_artifact_rejection.md index 1604fa587..b20b403ec 100644 --- a/tutorial/automatic_artifact_rejection.md +++ b/tutorial/automatic_artifact_rejection.md @@ -1,6 +1,7 @@ --- title: Automatic artifact rejection -tags: [tutorial, artifact, meg, raw, preprocessing, meg-artifact] +category: tutorial +tags: [artifact, meg, raw, preprocessing, meg-artifact] --- # Automatic artifact rejection @@ -296,8 +297,8 @@ More information on dealing with artifacts can also be found in some example scr ### Example scripts -{% include seealso tag1="artifact" tag2="example" %} +{% include seealso category="example" tag1="artifact" %} ### Frequently asked questions -{% include seealso tag1="artifact" tag2="faq" %} +{% include seealso category="faq" tag1="artifact" %} diff --git a/tutorial/beamformer.md b/tutorial/beamformer.md index e6efbafa1..bf20f7d96 100644 --- a/tutorial/beamformer.md +++ b/tutorial/beamformer.md @@ -1,6 +1,7 @@ --- title: Localizing oscillatory sources using beamformer techniques -tags: [tutorial, meg, freq, source, headmodel, mri, plotting, meg-language] +category: tutorial +tags: [meg, freq, source, headmodel, mri, plotting, meg-language] --- # Localizing oscillatory sources using beamformer techniques @@ -453,8 +454,10 @@ Beamforming source analysis in the frequency domain with DICS has been demonstra Details on head models can be found [here](/tutorial/headmodel_meg) or [here](/example/make_leadfields_using_different_headmodels). Computing event-related fields with [MNE](/tutorial/minimumnormestimate) or [LCMV](/tutorial/beamformer_lcmv) might be of interest. More information on [common filters can be found here](/example/common_filters_in_beamforming). If you are doing a group study where you want the grid points to be the same over all subjects, [see here](/example/sourcemodel_aligned2mni). See [here for source statistics](/example/source_statistics). -FAQs: -{% include seealso tag1="source" tag2="faq" %} +### See also these frequently asked questions -Example scripts: -{% include seealso tag1="source" tag2="example" %} +{% include seealso category="faq" tag1="source" %} + +### See also these example scripts + +{% include seealso category="example" tag1="source" %} diff --git a/tutorial/beamformingextended.md b/tutorial/beamformingextended.md index 37eed7acb..61fca23a6 100644 --- a/tutorial/beamformingextended.md +++ b/tutorial/beamformingextended.md @@ -1,6 +1,7 @@ --- title: Localizing visual gamma and cortico-muscular coherence using DICS -tags: [tutorial, meg, source, coherence, meg-visuomotor151-k] +category: tutorial +tags: [meg, source, coherence, meg-visuomotor151-k] --- # Localizing visual gamma and cortico-muscular coherence using DICS @@ -494,10 +495,8 @@ We demonstrated how to apply the DICS beamformer algorithm in the frequency doma Details on head models can be found [here](/tutorial/headmodel_meg) or [here](/example/make_leadfields_using_different_headmodels). Another tutorial on beamforming that covers options without contrasting conditions [can be found here](/tutorial/beamformer#source_analysiswithout_contrasting_condition). Computing event-related fields with [MNE](/tutorial/minimumnormestimate) or [LCMV](/tutorial/beamformer_lcmv) might be of interest. More information on [common filters can be found here](/example/common_filters_in_beamforming). See [here for source statistics](/example/source_statistics). If you want to dive deeper into coherence, [take a look here](/tutorial/coherence). And in the appendix there is a way described how to [compute virtual MEG sensors](/tutorial/virtual_sensors). -## See also +## See also these frequenty asked questions -{% include seealso tag1="faq" tag2="source" %} - -{% include seealso tag1="faq" tag2="connectivity" %} - -{% include seealso tag1="faq" tag2="coherence" %} +{% include seealso category="faq" tag1="source" %} +{% include seealso category="faq" tag1="connectivity" %} +{% include seealso category="faq" tag1="coherence" %} diff --git a/tutorial/cluster_permutation_freq.md b/tutorial/cluster_permutation_freq.md index 0ae0ff95e..bb8d71d18 100644 --- a/tutorial/cluster_permutation_freq.md +++ b/tutorial/cluster_permutation_freq.md @@ -1,6 +1,7 @@ --- title: Cluster-based permutation tests on time-frequency data -tags: [tutorial, statistics, eeg, meg, raw, freq, meg-language, neighbours] +category: tutorial +tags: [statistics, eeg, meg, raw, freq, meg-language, neighbours] --- # Cluster-based permutation tests on time-frequency data @@ -429,7 +430,7 @@ _Figure 3: T-statistic of the difference (FIC-FC) (of the combined planar gradie Try calling clusterplot with cfg.alpha = 0.05; {% include markup/end %} -## Summary and suggested further readings +## Summary and suggested further reading In this tutorial, we showed how to do non-parametric statistical test, cluster-based permutation test on planar TFR's with between-trials, with within-trials and with within-subjects experimental designs. It was also shown how to plot the results. @@ -437,12 +438,12 @@ If you are interested in parametric tests, you can read the [Parametric and non- If you would like to read more about statistical analysis, you can look at the following FAQs: -{% include seealso tag1="faq" tag2="statistics" %} -{% include seealso tag1="faq" tag2="cluster" %} -{% include seealso tag1="faq" tag2="neighbour" %} +{% include seealso category="faq" tag1="statistics" %} +{% include seealso category="faq" tag1="cluster" %} +{% include seealso category="faq" tag1="neighbour" %} and example scripts: -{% include seealso tag1="example" tag2="statistics" %} -{% include seealso tag1="example" tag2="cluster" %} -{% include seealso tag1="example" tag2="neighbour" %} +{% include seealso category="example" tag1="statistics" %} +{% include seealso category="example" tag1="cluster" %} +{% include seealso category="example" tag1="neighbour" %} diff --git a/tutorial/cluster_permutation_timelock.md b/tutorial/cluster_permutation_timelock.md index ad72a988e..0db05e175 100644 --- a/tutorial/cluster_permutation_timelock.md +++ b/tutorial/cluster_permutation_timelock.md @@ -1,6 +1,7 @@ --- title: Cluster-based permutation tests on event-related fields -tags: [tutorial, statistics, eeg, meg, timelock, plotting, meg-language, neighbours] +category: tutorial +tags: [statistics, eeg, meg, timelock, plotting, meg-language, neighbours] --- # Cluster-based permutation tests on event-related fields @@ -532,7 +533,7 @@ With the output, we can now create the plots _Figure 6: Raw effect (FIC-FC) on the grand average planar gradient ERFs with the prominent clusters highlighted._ -## Summary and suggested further readings +## Summary and suggested further reading In this tutorial, it was shown how to do non-parametric statistics on axial and planar ERFs in a between-trials and in within-subjects design. It was also shown how to plot the results. @@ -540,12 +541,12 @@ If you are interested in parametric tests in FieldTrip, you can read the [Parame If you would like to read more about statistical analysis, you can look at the following FAQs: -{% include seealso tag1="faq" tag2="statistics" %} -{% include seealso tag1="faq" tag2="cluster" %} -{% include seealso tag1="faq" tag2="neighbour" %} +{% include seealso category="faq" tag1="statistics" %} +{% include seealso category="faq" tag1="cluster" %} +{% include seealso category="faq" tag1="neighbour" %} and example scripts: -{% include seealso tag1="example" tag2="statistics" %} -{% include seealso tag1="example" tag2="cluster" %} -{% include seealso tag1="example" tag2="neighbour" %} +{% include seealso category="example" tag1="statistics" %} +{% include seealso category="example" tag1="cluster" %} +{% include seealso category="example" tag1="neighbour" %} diff --git a/tutorial/coherence.md b/tutorial/coherence.md index 10ccfcaf6..5cef79681 100644 --- a/tutorial/coherence.md +++ b/tutorial/coherence.md @@ -1,6 +1,7 @@ --- title: Analysis of corticomuscular coherence -tags: [tutorial, coherence, meg, emg, plotting, source, connectivity, meg-visuomotor151] +category: tutorial +tags: [coherence, meg, emg, plotting, source, connectivity, meg-visuomotor151] --- # Analysis of corticomuscular coherence @@ -320,13 +321,15 @@ Compare the results with figure 3. Pay special attention to the noise bias. This tutorial demonstrated how to compute one specific measure of connectivity. Using **[ft_connectivityanalysis](/reference/ft_connectivityanalysis)** you can also compute other undirected and directed connectivity measures, such as Granger causality. This is explained in more detail in the [connectivity tutorial](/tutorial/connectivity). -FAQ -{% include seealso tag1="faq" tag2="connectivity" %} -{% include seealso tag1="faq" tag2="coherence" %} +### See also these frequently asked questions -Example script -{% include seealso tag1="example" tag2="connectivity" %} -{% include seealso tag1="example" tag2="coherence" %} +{% include seealso category="faq" tag1="connectivity" %} +{% include seealso category="faq" tag1="coherence" %} + +### See also these examples + +{% include seealso category="example" tag1="connectivity" %} +{% include seealso category="example" tag1="coherence" %} ## Appendix 1: Localisation of neuronal sources coherent with the EMG using beamformers diff --git a/tutorial/connectivity.md b/tutorial/connectivity.md index 2b2e9539b..867447893 100644 --- a/tutorial/connectivity.md +++ b/tutorial/connectivity.md @@ -1,6 +1,7 @@ --- title: Analysis of sensor- and source-level connectivity -tags: [tutorial, freq, connectivity, coherence, granger, dtf, pdc] +category: tutorial +tags: [freq, connectivity, coherence, granger, dtf, pdc] --- # Analysis of sensor- and source-level connectivity @@ -251,11 +252,11 @@ Let's say you wanted to look at cortico-cortical connectivity, e.g., interaction This tutorial demonstrates how to compute connectivity measures between two time series. If you want to learn how to make a distributed representation of connectivity throughout the whole brain, you may want to continue with the [corticomuscular coherence tutorial](/tutorial/coherence). -FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="coherence" %} +{% include seealso category="faq" tag1="coherence" %} -Example scripts: +### See also these examples -{% include seealso tag1="example" tag2="connectivity" %} -{% include seealso tag1="example" tag2="coherence" %} +{% include seealso category="example" tag1="connectivity" %} +{% include seealso category="example" tag1="coherence" %} diff --git a/tutorial/connectivityextended.md b/tutorial/connectivityextended.md index 6b9e781af..3fff646de 100644 --- a/tutorial/connectivityextended.md +++ b/tutorial/connectivityextended.md @@ -1,6 +1,7 @@ --- title: Extended analysis of sensor- and source-level connectivity -tags: [tutorial, freq, connectivity, coherence, granger, dtf, pdc, meg-visuomotor151] +category: tutorial +tags: [freq, connectivity, coherence, granger, dtf, pdc, meg-visuomotor151] --- # Extended analysis of sensor- and source-level connectivity diff --git a/tutorial/continuous.md b/tutorial/continuous.md index 9467fd1ec..fa34b4afc 100644 --- a/tutorial/continuous.md +++ b/tutorial/continuous.md @@ -1,6 +1,7 @@ --- title: Preprocessing - Reading continuous EEG and MEG data -tags: [tutorial, preprocessing, continuous, eeg, raw, brainvision, memory, meg-language, eeg-language] +category: tutorial +tags: [preprocessing, continuous, eeg, raw, brainvision, memory, meg-language, eeg-language] --- # Preprocessing - Reading continuous EEG and MEG data @@ -253,10 +254,10 @@ The following example shows how to first read the data as a single continuous se After having finished this tutorial on preprocessing, you can continue with the tutorial on [Preprocessing of EEG data and compute ERPs](/tutorial/preprocessing_erp), with the [event-related averaging](/tutorial/eventrelatedaveraging) or with the [time-frequency analysis](/tutorial/timefrequencyanalysis) tutorial. -If you have more questions about preprocessing, you can also read the following FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="preprocessing" %} +{% include seealso category="faq" tag1="preprocessing" %} -Or you can also read the example scripts: +### See also these examples -{% include seealso tag1="example" tag2="preprocessing" %} +{% include seealso category="example" tag1="preprocessing" %} diff --git a/tutorial/coregistration_opm.md b/tutorial/coregistration_opm.md index 0989271eb..a78fe1791 100644 --- a/tutorial/coregistration_opm.md +++ b/tutorial/coregistration_opm.md @@ -1,6 +1,7 @@ --- title: Coregistration of Optically Pumped Magnetometer (OPM) data -tags: [tutorial, opm, fieldline, coordsys, polhemus] +category: tutorial +tags: [opm, fieldline, coordsys, polhemus] --- # Coregistration of Optically Pumped Magnetometer (OPM) data diff --git a/tutorial/distributedcomputing_parfor.md b/tutorial/distributedcomputing_parfor.md index 42e6a91d1..06a922f1e 100755 --- a/tutorial/distributedcomputing_parfor.md +++ b/tutorial/distributedcomputing_parfor.md @@ -1,6 +1,7 @@ --- title: Speeding up your analysis using distributed computing with parfor -tags: [tutorial, matlab, script, parfor, distcomp, meg-language] +category: tutorial +tags: [matlab, script, parfor, distcomp, meg-language] --- # Speeding up your analysis using distributed computing with parfor diff --git a/tutorial/distributedcomputing_qsub.md b/tutorial/distributedcomputing_qsub.md index 3822fccd0..91908c87b 100644 --- a/tutorial/distributedcomputing_qsub.md +++ b/tutorial/distributedcomputing_qsub.md @@ -1,6 +1,7 @@ --- title: Speeding up your analysis using distributed computing with qsub -tags: [tutorial, matlab, script, qsub, distcomp, meg-language] +category: tutorial +tags: [matlab, script, qsub, distcomp, meg-language] --- # Speeding up your analysis using distributed computing with qsub @@ -275,7 +276,7 @@ This way you can distribute your custom function (e.g., see below) along with th This tutorial covered how to distribute your computations/workload over multiple computers in a cluster that uses the Torque or SGE batch queue system. In our example, we have performed a relatively simple timelock analysis to compute event-related fields, but one can imagine that it does not need many adjustments to distribute any other type of analysis. Using the configuration demonstrated in Example 2, you can distribute any form of analysis. FAQs related to issues in this tutorial: -{% include seealso tag1="faq" tag2="qsub" %} -{% include seealso tag1="faq" tag2="peer" %} -{% include seealso tag1="faq" tag2="engine" %} -{% include seealso tag1="faq" tag2="distcomp" %} +{% include seealso category="faq" tag1="qsub" %} +{% include seealso category="faq" tag1="peer" %} +{% include seealso category="faq" tag1="engine" %} +{% include seealso category="faq" tag1="distcomp" %} diff --git a/tutorial/electrode.md b/tutorial/electrode.md index b649c078f..c358fadaa 100644 --- a/tutorial/electrode.md +++ b/tutorial/electrode.md @@ -1,6 +1,7 @@ --- title: Localizing electrodes using a 3D-scanner -tags: [tutorial, source, electrode, fiducial, coordinate] +category: tutorial +tags: [source, electrode, fiducial, coordinate] --- # Localizing electrodes using a 3D-scanner @@ -190,4 +191,4 @@ We suggest you read the frequently asked question about [coordinate systems](/fa Frequently asked questions that relate to electrodes are: -{% include seealso tag1="electrode" tag2="faq" %} +{% include seealso category="faq" tag1="electrode" %} diff --git a/tutorial/epilepsy.md b/tutorial/epilepsy.md index 3d9b4dfa9..155276600 100644 --- a/tutorial/epilepsy.md +++ b/tutorial/epilepsy.md @@ -1,6 +1,7 @@ --- title: Virtual channel analysis of epilepsy MEG data -tags: [tutorial, meg-epilepsy, anywave, mricro] +category: tutorial +tags: [meg-epilepsy, anywave, mricro] --- # Virtual channel analysis of epilepsy MEG data @@ -700,7 +701,7 @@ The remainder of the analysis is identical to the CTF analysis: we interpolate a {% include image src="/assets/img/tutorial/epilepsy/figure17.png" width="700" %} -## Summary and Conclusions +## Summary and conclusion This tutorial provided step-by-step details on how to perform a kurtosis beamformer analysis of epilepsy data using FieldTrip. Data for 3 patients were shared, and detailed analysis instructions were given for Patient 3. As well as outlining how the data are processed in FieldTrip, the tutorial described how to write the outputs into file formats which can be read with other software, to continue the clinical interpretation of the data. diff --git a/tutorial/eventrelatedaveraging.md b/tutorial/eventrelatedaveraging.md index ed88b63ea..16eec1b8a 100644 --- a/tutorial/eventrelatedaveraging.md +++ b/tutorial/eventrelatedaveraging.md @@ -1,6 +1,7 @@ --- title: Event-related averaging and MEG planar gradient -tags: [tutorial, meg, timelock, preprocessing, plotting, meg-language] +category: tutorial +tags: [meg, timelock, preprocessing, plotting, meg-language] --- # Event-related averaging and MEG planar gradient @@ -289,5 +290,5 @@ If you are interested in a different analysis of your data that shows event-rela ## See also -{% include seealso tag1="timelock" tag2="faq" %} -{% include seealso tag1="timelock" tag2="example" %} +{% include seealso category="faq" tag1="timelock" %} +{% include seealso category="example" tag1="timelock" %} diff --git a/tutorial/eventrelatedstatistics.md b/tutorial/eventrelatedstatistics.md index 565533d3f..fa403d658 100644 --- a/tutorial/eventrelatedstatistics.md +++ b/tutorial/eventrelatedstatistics.md @@ -1,6 +1,7 @@ --- title: Parametric and non-parametric statistics on event-related fields -tags: [tutorial, statistics, meg, eeg, timelock, freq, meg-language, neighbours] +category: tutorial +tags: [statistics, meg, eeg, timelock, freq, meg-language, neighbours] --- # Parametric and non-parametric statistics on event-related fields diff --git a/tutorial/fourier.md b/tutorial/fourier.md index 314cb7815..a95e53886 100644 --- a/tutorial/fourier.md +++ b/tutorial/fourier.md @@ -1,6 +1,6 @@ --- title: Fourier analysis of neuronal oscillations and synchronization -tags: [example, freq, coherence, eeg, meg, fixme] +tags: [fixme] --- {% include markup/yellow %} diff --git a/tutorial/headmodel_eeg.md b/tutorial/headmodel_eeg.md index bc1222698..27b6f967f 100644 --- a/tutorial/headmodel_eeg.md +++ b/tutorial/headmodel_eeg.md @@ -4,4 +4,4 @@ title: There are a number of tutorials that deal with EEG head models. -{% include seealso tag1="tutorial" tag2="headmodel" tag3="eeg" %} +{% include seealso category="tutorial" tag2="headmodel" tag3="eeg" %} diff --git a/tutorial/headmodel_eeg_bem.md b/tutorial/headmodel_eeg_bem.md index 542789988..95f3d94dc 100644 --- a/tutorial/headmodel_eeg_bem.md +++ b/tutorial/headmodel_eeg_bem.md @@ -1,6 +1,7 @@ --- title: Creating a BEM volume conduction model of the head for source reconstruction of EEG data -tags: [tutorial, eeg, source, headmodel, mri, plotting, meg-language] +category: tutorial +tags: [eeg, source, headmodel, mri, plotting, meg-language] --- # Creating a BEM volume conduction model of the head for source reconstruction of EEG data @@ -9,7 +10,7 @@ tags: [tutorial, eeg, source, headmodel, mri, plotting, meg-language] This tutorial demonstrates how to construct a Boundary Element Method (BEM) volume conduction model of the head, also known as head model, based on an individual subject's anatomical MRI. For didactic reasons we will use the anatomical MRI corresponding to the data that was also analyzed in other tutorials. The original anatomical MRI data, along with the (intermediate) results of this tutorial, can be downloaded from [out download server](https://download.fieldtriptoolbox.org/tutorial/headmodel_eeg_bem/). -In reality we did _not_ record EEG data for this subject, nor do we have recorded electrode positions. To demonstrate the EEG volume conduction model, we will use [template](/template/electrode) electrodes. The template electrodes are not aligned with the individual MRI and head model, hence we will conclude with the alignment of the electrodes. +In reality we did _not_ record EEG data for this subject, nor do we have recorded electrode positions. To demonstrate the EEG volume conduction model, we will use [template](/template/electrode) electrodes. The template electrodes are not aligned with the individual MRI and head model, hence towards the end we will demonstrate how to align the template electrodes with the model. This tutorial will **not** show how to perform the source reconstruction itself. If you are interested in source reconstruction methods, you can go to the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) and to the [Source reconstruction of event-related fields using minimum-norm estimate](/tutorial/minimumnormestimate) tutorials. @@ -479,10 +480,10 @@ This tutorial explained how to build a volume conduction model of the head using You can read more about specific source reconstruction methods in the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) and in the [Source reconstruction of event-related fields using minimum-norm estimate](/tutorial/minimumnormestimate) tutorials. -Here are the related FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="headmodel" tag3="eeg" %} +{% include seealso category="faq" tag1="headmodel" tag2="eeg" %} -and the related examples: +### See also these examples -{% include seealso tag1="example" tag2="headmodel" tag3="eeg" %} +{% include seealso category="example" tag1="headmodel" tag2="eeg" %} diff --git a/tutorial/headmodel_eeg_fem.md b/tutorial/headmodel_eeg_fem.md index c9300d1b4..5b7f8c028 100644 --- a/tutorial/headmodel_eeg_fem.md +++ b/tutorial/headmodel_eeg_fem.md @@ -1,6 +1,7 @@ --- title: Creating a FEM volume conduction model of the head for source reconstruction of EEG data -tags: [tutorial, eeg, source, headmodel, mri, plotting, paraview, seg3d, meg-language] +category: tutorial +tags: [eeg, source, headmodel, mri, plotting, paraview, seg3d, meg-language] --- # Creating a FEM volume conduction model of the head for source reconstruction of EEG data @@ -9,7 +10,7 @@ tags: [tutorial, eeg, source, headmodel, mri, plotting, paraview, seg3d, meg-lan This tutorial demonstrates how to construct a Finite Element Method (FEM) volume conduction model of the head, also known as head model, based on an individual subject's anatomical MRI. For didactic reasons we will use the anatomical MRI corresponding to the data that was also analyzed in other tutorials. The original anatomical MRI data, along with the (intermediate) results of this tutorial, can be downloaded from [out download server](https://download.fieldtriptoolbox.org/tutorial/headmodel_eeg_fem/). -In reality we did _not_ record EEG data for this subject, nor do we have recorded electrode positions. To demonstrate the EEG volume conduction model, we will use [template](/template/electrode) electrodes. The template electrodes are not aligned with the individual MRI and head model, hence we will conclude with the alignment of the electrodes. +In reality we did _not_ record EEG data for this subject, nor do we have recorded electrode positions. To demonstrate the EEG volume conduction model, we will use [template](/template/electrode) electrodes. The template electrodes are not aligned with the individual MRI and head model, hence towards the end we will demonstrate how to align the template electrodes with the model. This tutorial will **not** show how to perform the source reconstruction itself. If you are interested in source reconstruction methods, you can go to the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) and to the [Source reconstruction of event-related fields using minimum-norm estimate](/tutorial/minimumnormestimate) tutorials. @@ -374,10 +375,10 @@ This tutorial explained how to build a volume conduction model of the head using You can read more about specific source reconstruction methods in the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) and in the [Source reconstruction of event-related fields using minimum-norm estimate](/tutorial/minimumnormestimate) tutorials. -Here are the related FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="headmodel" tag3="eeg" %} +{% include seealso category="faq" tag1="headmodel" tag2="eeg" %} -and the related examples: +### See also these examples -{% include seealso tag1="example" tag2="headmodel" tag3="eeg" %} +{% include seealso category="example" tag1="headmodel" tag2="eeg" %} diff --git a/tutorial/headmodel_meg.md b/tutorial/headmodel_meg.md index 0660608f8..a38bb1d43 100644 --- a/tutorial/headmodel_meg.md +++ b/tutorial/headmodel_meg.md @@ -1,6 +1,7 @@ --- title: Creating a volume conduction model of the head for source reconstruction of MEG data -tags: [tutorial, source, meg, headmodel, mri, plotting, meg-language] +category: tutorial +tags: [source, meg, headmodel, mri, plotting, meg-language] --- # Creating a volume conduction model of the head for source reconstruction of MEG data @@ -199,10 +200,10 @@ In this tutorial, it was explained how to build a volume conduction model of the You can read more about specific source reconstruction methods in the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) and in the [Source reconstruction of event-related fields using minimum-norm estimate](/tutorial/minimumnormestimate) tutorials. -Here are the related FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="headmodel" tag3="meg" %} +{% include seealso category="faq" tag1="headmodel" tag2="meg" %} -and the related examples: +### See also these examples -{% include seealso tag1="example" tag2="headmodel" tag3="meg" %} +{% include seealso category="example" tag1="headmodel" tag2="meg" %} diff --git a/tutorial/human_ecog.md b/tutorial/human_ecog.md index fc673a905..c021ea215 100644 --- a/tutorial/human_ecog.md +++ b/tutorial/human_ecog.md @@ -1,6 +1,7 @@ --- title: Analysis of human ECoG and sEEG recordings -tags: [tutorial, ieeg, ecog, seeg, anatomy, mri, ct, freesurfer, ecog-protocol] +category: tutorial +tags: [ieeg, ecog, seeg, anatomy, mri, ct, freesurfer, ecog-protocol] --- # Analysis of human ECoG and sEEG recordings @@ -601,19 +602,17 @@ We recommend that the user construct a single script for a single subject by cop You can read more about the challenges and concepts of preprocessing intracranial EEG data in the [Intracranial EEG for Cognitive Neuroscience handbook](https://psyarxiv.com/9jd32). You can read more about other types of intracranial recordings such as [spike train recordings](/tutorial/spike) and [spikes and local field potentials](/tutorial/spikefield) in the following documentation. {% include seealso tag1="getting_started" tag2="bioimage" %} -{% include seealso tag1="example" tag2="ecog" %} -{% include seealso tag1="tutorial" tag2="animal" %} - -Here is also a list of related documentation: +{% include seealso category="example" tag1="ecog" %} +{% include seealso category="tutorial" tag1="animal" %} ### FAQs on data formats -{% include seealso tag1="dataformat" tag2="faq" %} +{% include seealso category="faq" tag1="dataformat" %} ### FAQs on frequency analysis -{% include seealso tag1="freq" tag2="faq" %} +{% include seealso category="faq" tag1="freq" %} ### FAQs on connectivity -{% include seealso tag1="connectivity" tag2="faq" %} +{% include seealso category="faq" tag1="connectivity" %} diff --git a/tutorial/ica_artifact_cleaning.md b/tutorial/ica_artifact_cleaning.md index 6acf99cd4..810ce974a 100644 --- a/tutorial/ica_artifact_cleaning.md +++ b/tutorial/ica_artifact_cleaning.md @@ -1,6 +1,7 @@ --- title: Cleaning artifacts using ICA -tags: [tutorial, artifact, meg, raw, preprocessing, meg-artifact] +category: tutorial +tags: [artifact, meg, raw, preprocessing, meg-artifact] --- # Cleaning artifacts using ICA @@ -258,8 +259,8 @@ More information on dealing with artifacts can also be found in some example scr #### Example scripts -{% include seealso tag1="artifact" tag2="example" %} +{% include seealso category="example" tag1="artifact" %} #### Frequently asked questions -{% include seealso tag1="artifact" tag2="faq" %} +{% include seealso category="faq" tag1="artifact" %} diff --git a/tutorial/introduction.md b/tutorial/introduction.md index 6327e0d0e..78f9fbe3d 100644 --- a/tutorial/introduction.md +++ b/tutorial/introduction.md @@ -1,6 +1,7 @@ --- title: Introduction to the FieldTrip toolbox -tags: [tutorial, meg, eeg, raw, timelock, freq, source, statistics, lfp, spike, cfg, matlab] +category: tutorial +tags: [meg, eeg, raw, timelock, freq, source, statistics, lfp, spike, cfg, matlab] --- # Introduction to the FieldTrip toolbox @@ -149,10 +150,10 @@ If you would like to have an introduction about scripting in MATLAB, it is sugge When you have more questions about the topic of any tutorial, don't forget to check the [frequently asked questions](/faq) and the [example scripts](/example). -Here are the [frequently asked questions](/faq) that are MATLAB specific: +### See also these frequently asked questions -{% include seealso tag1="matlab" tag2="faq" %} +{% include seealso category="faq" tag1="matlab" %} -Here are the [example scripts](/example) that are MATLAB specific: +### See also these examples -{% include seealso tag1="matlab" tag2="example" %} +{% include seealso category="example" tag1="matlab" %} diff --git a/tutorial/layout.md b/tutorial/layout.md index c0657a045..ca888cf32 100644 --- a/tutorial/layout.md +++ b/tutorial/layout.md @@ -1,6 +1,7 @@ --- title: Specifying the channel layout for plotting -tags: [tutorial, plotting, layout, eeg, meg, seeg, ecog, nirs] +category: tutorial +tags: [plotting, layout, eeg, meg, seeg, ecog, nirs] --- # Specifying the channel layout for plotting diff --git a/tutorial/memory.md b/tutorial/memory.md index 454be1b64..a276923ad 100644 --- a/tutorial/memory.md +++ b/tutorial/memory.md @@ -1,6 +1,7 @@ --- title: Making a memory efficient analysis pipeline -tags: [tutorial, matlab, script, memory] +category: tutorial +tags: [matlab, script, memory] --- # Making a memory efficient analysis pipeline @@ -119,10 +120,10 @@ When you are working with a very large data set repeatedly or interactively, cle clear a a = rand(100e6,1) % New 800 MB array -## Summary and suggested further readings +## Summary and suggested further reading This tutorial gave some advice for scripting your analysis in a memory-efficient way. We also advise to read this [technical note](http://www.mathworks.com/support/tech-notes/1100/1106.html) from MathWorks. Further suggestions for computational efficiency are given in the tutorial on distributed computing using [qsub](/tutorial/distributedcomputing_qsub) and [parfor](/tutorial/distributedcomputing_parfor). These are FAQs that are related to memory issues: -{% include seealso tag1="faq" tag2="memory" %} +{% include seealso category="faq" tag1="memory" %} diff --git a/tutorial/minimumnormestimate.md b/tutorial/minimumnormestimate.md index ac8a33feb..a150e2088 100644 --- a/tutorial/minimumnormestimate.md +++ b/tutorial/minimumnormestimate.md @@ -1,6 +1,7 @@ --- title: Source reconstruction of event-related fields using minimum-norm estimation -tags: [tutorial, timelock, source, meg, headmodel, mri, plotting, meg-language] +category: tutorial +tags: [timelock, source, meg, headmodel, mri, plotting, meg-language] --- # Source reconstruction of event-related fields using minimum-norm estimation @@ -174,8 +175,10 @@ In this tutorial we showed how to do MNE source reconstruction method on a singl Functions and tutorial pages that show how to average, and how to analyze statistically source reconstructions across subjects or how to compare those to a template brain are still under development. -FAQ -{% include seealso tag1="source" tag2="faq" %} +See also these FAQs: -Example script -{% include seealso tag1="source" tag2="example" %} +{% include seealso category="faq" tag1="source" %} + +See also these example scripts: + +{% include seealso category="example" tag1="source" %} diff --git a/tutorial/monkey_ecog.md b/tutorial/monkey_ecog.md index cd82fb9ef..f69de1c7b 100644 --- a/tutorial/monkey_ecog.md +++ b/tutorial/monkey_ecog.md @@ -1,6 +1,7 @@ --- title: Analysis of monkey ECoG recordings -tags: [tutorial, ieeg, ecog, neurotycho, animal] +category: tutorial +tags: [ieeg, ecog, neurotycho, animal] --- # Analysis of monkey ECoG recordings @@ -311,12 +312,12 @@ Here is also a list of related documentation: ### FAQs on connectivity -{% include seealso tag1="connectivity" tag2="faq" %} +{% include seealso category="faq" tag1="connectivity" %} ### FAQs on frequency analysis -{% include seealso tag1="freq" tag2="faq" %} +{% include seealso category="faq" tag1="freq" %} ### FAQs on data formats -{% include seealso tag1="dataformat" tag2="faq" %} +{% include seealso category="faq" tag1="dataformat" %} diff --git a/tutorial/mouse_eeg.md b/tutorial/mouse_eeg.md index 24ad07da2..fdf73b4d0 100644 --- a/tutorial/mouse_eeg.md +++ b/tutorial/mouse_eeg.md @@ -1,6 +1,7 @@ --- title: Channel and source analysis of mouse EEG -tags: [tutorial, source, ieeg, ecog, animal] +category: tutorial +tags: [source, ieeg, ecog, animal] --- # Channel and source analysis of mouse EEG diff --git a/tutorial/mvpa_light.md b/tutorial/mvpa_light.md index 5b8839ea5..1f971e419 100644 --- a/tutorial/mvpa_light.md +++ b/tutorial/mvpa_light.md @@ -1,6 +1,7 @@ --- title: Classification of event-related MEG data using MVPA-Light -tags: [tutorial, eeg, meg, multivariate, timelock, freq] +category: tutorial +tags: [eeg, meg, multivariate, timelock, freq] --- # Classification of event-related MEG data using MVPA-Light diff --git a/tutorial/networkanalysis.md b/tutorial/networkanalysis.md index 1cbf277bc..e64c87cdb 100644 --- a/tutorial/networkanalysis.md +++ b/tutorial/networkanalysis.md @@ -1,6 +1,7 @@ --- title: Whole brain connectivity and network analysis -tags: [tutorial, connectivity] +category: tutorial +tags: [connectivity] --- # Whole brain connectivity and network analysis diff --git a/tutorial/networkanalysis_eeg.md b/tutorial/networkanalysis_eeg.md index 768718951..e73a3b88c 100644 --- a/tutorial/networkanalysis_eeg.md +++ b/tutorial/networkanalysis_eeg.md @@ -1,6 +1,7 @@ --- title: Whole brain connectivity and network analysis -tags: [tutorial, connectivity] +category: tutorial +tags: [connectivity] --- # Whole brain connectivity and network analysis diff --git a/tutorial/networkanalysis_old.md b/tutorial/networkanalysis_old.md index f1e1945c2..82e578558 100644 --- a/tutorial/networkanalysis_old.md +++ b/tutorial/networkanalysis_old.md @@ -1,6 +1,7 @@ --- title: Whole brain connectivity and network analysis -tags: [tutorial, connectivity] +category: tutorial +tags: [connectivity] --- # Whole brain connectivity and network analysis diff --git a/tutorial/nirs_multichannel.md b/tutorial/nirs_multichannel.md index 9d54fa871..8e23df5a6 100644 --- a/tutorial/nirs_multichannel.md +++ b/tutorial/nirs_multichannel.md @@ -1,6 +1,7 @@ --- title: Preprocessing and averaging of multi-channel NIRS data -tags: [tutorial, nirs, preprocessing, nirs-multichannel] +category: tutorial +tags: [nirs, preprocessing, nirs-multichannel] --- # Preprocessing and averaging of multi-channel NIRS data diff --git a/tutorial/nirs_singlechannel.md b/tutorial/nirs_singlechannel.md index 8a61debc5..c135763ec 100644 --- a/tutorial/nirs_singlechannel.md +++ b/tutorial/nirs_singlechannel.md @@ -1,6 +1,7 @@ --- title: Preprocessing and averaging of single-channel NIRS data -tags: [tutorial, nirs, preprocessing, nirs-singlechannel] +category: tutorial +tags: [nirs, preprocessing, nirs-singlechannel] --- # Preprocessing and averaging of single-channel NIRS data diff --git a/tutorial/plotting.md b/tutorial/plotting.md index 9cb1086b9..605ee85d1 100644 --- a/tutorial/plotting.md +++ b/tutorial/plotting.md @@ -1,6 +1,7 @@ --- title: Plotting data at the channel and source level -tags: [tutorial, plotting, layout] +category: tutorial +tags: [plotting, layout] --- # Plotting data at the channel and source level @@ -587,8 +588,10 @@ More general approaches for visualisation of data are Plotting channel-level data in a 2-dimensional representation on your flat computer screen or on paper requires that the 3-dimensional channel positions are mapped or projected onto the 2-dimensional plane. The tutorial on [specifying the channel layout for plotting](/tutorial/layout) explains how this mapping is constructed. -Frequently asked question -{% include seealso tag1="plotting" tag2="faq" %} +### See also these frequently asked questions -Example script -{% include seealso tag1="plotting" tag2="example" %} +{% include seealso category="faq" tag1="plotting" %} + +### See also these examples + +{% include seealso category="example" tag1="plotting" %} diff --git a/tutorial/preprocessing.md b/tutorial/preprocessing.md index ad40b39f7..5466e4a24 100644 --- a/tutorial/preprocessing.md +++ b/tutorial/preprocessing.md @@ -1,6 +1,7 @@ --- title: Preprocessing - Segmenting and reading trial-based EEG and MEG data -tags: [tutorial, meg, raw, preprocessing, meg-language] +category: tutorial +tags: [meg, raw, preprocessing, meg-language] --- # Preprocessing - Segmenting and reading trial-based EEG and MEG data @@ -173,10 +174,10 @@ More on the `trialinfo` field can be found in the [faq](/faq/is_it_possible_to_k After having finished this tutorial on preprocessing, you can continue with the [event-related averaging](/tutorial/eventrelatedaveraging) or with the [time-frequency analysis](/tutorial/timefrequencyanalysis) tutorial. -If you have more questions about preprocessing, you can also read the following FAQs: +### See also these frequently asked questions -{% include seealso tag1="preprocessing" tag2="faq" %} +{% include seealso category="faq" tag1="preprocessing" %} -and example scripts: +### See also these examples -{% include seealso tag1="preprocessing" tag2="example" %} +{% include seealso category="example" tag1="preprocessing" %} diff --git a/tutorial/preprocessing_erp.md b/tutorial/preprocessing_erp.md index 319c75926..8d8659557 100644 --- a/tutorial/preprocessing_erp.md +++ b/tutorial/preprocessing_erp.md @@ -1,6 +1,7 @@ --- title: Preprocessing of EEG data and computing ERPs -tags: [tutorial, eeg, brainvision, preprocessing, trialfun, timelock, eeg-affective] +category: tutorial +tags: [eeg, brainvision, preprocessing, trialfun, timelock, eeg-affective] --- # Preprocessing of EEG data and computing ERPs @@ -354,12 +355,12 @@ Explore the event-related potential by dragging boxes around (groups of) sensors After having finished this tutorial on EEG data, you can look at the [event-related averaging](/tutorial/eventrelatedaveraging) tutorial for MEG data or continue with the [time-frequency analysis](/tutorial/timefrequencyanalysis) tutorial. -If you have more questions about preprocessing or ERP analysis, you can also read the following FAQs: +### See also these frequently asked questions -{% include seealso tag1="faq" tag3="preprocessing" %} -{% include seealso tag1="faq" tag3="timelock" %} +{% include seealso category="faq" tag1="preprocessing" %} +{% include seealso category="faq" tag1="timelock" %} -Or you can also read the examples: +### See also these examples -{% include seealso tag1="example" tag3="preprocessing" %} -{% include seealso tag1="example" tag3="timelock" %} +{% include seealso category="example" tag1="preprocessing" %} +{% include seealso category="example" tag1="timelock" %} diff --git a/tutorial/preprocessing_opm.md b/tutorial/preprocessing_opm.md index d6822d762..190514812 100644 --- a/tutorial/preprocessing_opm.md +++ b/tutorial/preprocessing_opm.md @@ -1,6 +1,7 @@ --- title: Preprocessing of Optically Pumped Magnetometer (OPM) data -tags: [tutorial, opm, fieldline, opm-mediannerve] +category: tutorial +tags: [opm, fieldline, opm-mediannerve] --- # Preprocessing of Optically Pumped Magnetometer (OPM) data @@ -574,10 +575,10 @@ This tutorial gave an introduction on processing OPM data, specifically dealing You may want to continue with the more general [tutorials](/tutorial/) on processing MEG (and EEG) data, or have a look at the [system specific details](/getting_started) for the OPM data that you are working with. Also, you could have a look at the tutorial about [coregistration of OPM data](/tutorial/coregistration_opm). -Furthermore, you can explore example scripts that deal with OPMs: +### See also these frequently asked questions -{% include seealso tag1="example" tag2="opm" %} +{% include seealso category="faq" tag1="opm" %} -and frequently asked questions: +### See also these examples -{% include seealso tag1="opm" %} +{% include seealso category="example" tag1="opm" %} diff --git a/tutorial/salzburg.md b/tutorial/salzburg.md index 946ee1d09..7f98d83b3 100644 --- a/tutorial/salzburg.md +++ b/tutorial/salzburg.md @@ -1,5 +1,6 @@ --- title: Analysis of auditory evoked fields in sensor and source space +tags: [fixme] --- # Analysis of auditory evoked fields in sensor and source space diff --git a/tutorial/scripting.md b/tutorial/scripting.md index 7f8895be2..536ad1c9b 100644 --- a/tutorial/scripting.md +++ b/tutorial/scripting.md @@ -1,6 +1,7 @@ --- title: Creating a clean analysis pipeline -tags: [tutorial, matlab, script] +category: tutorial +tags: [matlab, script] --- # Creating a clean analysis pipeline @@ -222,16 +223,16 @@ Large datasets often require quite some processing time, hence it is convenient The steps that do not require user interaction can even be executed in parallel to speed up the processing. This is explained in the [parfor](/tutorial/distributedcomputing_parfor) and [qsub](/tutorial/distributedcomputing_qsub) tutorials. -## Summary and suggested further readings +## Summary and suggested further reading This tutorial explained how to write your own functions and how to do batching in order to increase the efficiency of your analysis. If you are interested in improving memory usage and the speed of your analysis, you can check [this](/tutorial/memory) and the tutorials on distributed computing using [qsub](/tutorial/distributedcomputing_qsub) and [parfor](/tutorial/distributedcomputing_parfor) tutorial. When you have more questions about the topic of any tutorial, don't forget to check the [frequently asked questions](/faq) and the [example scripts](/example). -Here are the [frequently asked questions](/faq) that are MATLAB specific: +### See also these frequently asked questions -{% include seealso tag1="matlab" tag2="faq" %} +{% include seealso category="faq" tag1="matlab" %} -Here are the [example scripts](/example) that are MATLAB specific: +### See also these examples -{% include seealso tag1="matlab" tag2="example" %} +{% include seealso category="example" tag1="matlab" %} diff --git a/tutorial/sensor_analysis.md b/tutorial/sensor_analysis.md index 36af0e578..b5226caff 100644 --- a/tutorial/sensor_analysis.md +++ b/tutorial/sensor_analysis.md @@ -1,6 +1,7 @@ --- title: Sensor-level ERF, TFR and connectivity analyses -tags: [tutorial, meg, freq, timelock, preprocessing, plotting, meg-visuomotor151-k] +category: tutorial +tags: [meg, freq, timelock, preprocessing, plotting, meg-visuomotor151-k] --- # Sensor-level ERF, TFR and connectivity analyses @@ -325,12 +326,12 @@ This tutorial gave an overview of some options available in FieldTrip for doing After having finished this tutorial, you might want to read through the tutorial on [time-frequency analysis](/tutorial/timefrequencyanalysis), which provides more details on the various tapers available and their implications. Alternative follow-ups would be the tutorial on [beamformers](/tutorial/beamformer) for source reconstruction or, for details on statistics, one of the statistics [tutorials](/tutorial). -Furthermore, you can explore relevant example scripts: +### See also these frequently asked questions -{% include seealso tag1="example" tag2="preprocessing" tag3="timelock" %} -{% include seealso tag1="example" tag2="preprocessing" tag3="freq" %} +{% include seealso category="faq" tag1="preprocessing" tag3="timelock" %} +{% include seealso category="faq" tag1="preprocessing" tag3="freq" %} -and frequently asked questions: +### See also these examples -{% include seealso tag1="faq" tag2="preprocessing" tag3="timelock" %} -{% include seealso tag1="faq" tag2="preprocessing" tag3="freq" %} +{% include seealso category="example" tag1="preprocessing" tag3="timelock" %} +{% include seealso category="example" tag1="preprocessing" tag3="freq" %} diff --git a/tutorial/sleep.md b/tutorial/sleep.md index e1d804aed..e78ea47d1 100644 --- a/tutorial/sleep.md +++ b/tutorial/sleep.md @@ -1,6 +1,7 @@ --- title: Extracting the brain state and events from continuous sleep EEG -tags: [tutorial, sleep, edf, eeg, emg, ecg, artifacts, continuous] +category: tutorial +tags: [sleep, edf, eeg, emg, ecg, artifacts, continuous] --- # Extracting the brain state and events from continuous sleep EEG @@ -866,7 +867,7 @@ Interesting to continue the analysis if you want to go further: - Practicing or trying to automatically find different kind of events, e.g., rapid eye movements and blinks (in the first derivative of a filtered EOG signal), epileptic spikes have similar properties to slow waves (but have different amplitudes and shapes) ... - find the timelocking/co-occurrence between different events (e.g., spindles that occur at the same time as slow waves.) and only look at the ones that occur together or the ones that do not. -Suggested tutorials for further reading: +### See also these tutorials - [Preprocessing - Reading continuous EEG data](/tutorial/continuous) - [Getting started with EDF (European Data Format) data](/getting_started/edf) @@ -874,6 +875,6 @@ Suggested tutorials for further reading: - [Time-frequency analysis](/tutorial/timefrequencyanalysis) - [Time-frequency analysis of combined MEG/EEG data](/workshop/natmeg2014/timefrequency) -Suggested frequently asked questions: +### See also these frequently asked questions - [How can I read all channels from an EDF file that contains multiple sampling rates?](/faq/how_can_i_read_all_channels_from_an_edf_file_that_contains_multiple_sampling_rates) diff --git a/tutorial/sourcemodel.md b/tutorial/sourcemodel.md index 8d29e7cbd..46abc04a8 100644 --- a/tutorial/sourcemodel.md +++ b/tutorial/sourcemodel.md @@ -1,6 +1,7 @@ --- title: Creating a source model for source reconstruction of MEG or EEG data -tags: [tutorial, source, meg, sourcemodel, mri, plotting, meg-language] +category: tutorial +tags: [source, meg, sourcemodel, mri, plotting, meg-language] --- # Creating a source model for source reconstruction of MEG or EEG data diff --git a/tutorial/spike.md b/tutorial/spike.md index 679a350ed..4b4a805d2 100644 --- a/tutorial/spike.md +++ b/tutorial/spike.md @@ -1,6 +1,7 @@ --- title: Preprocessing and analysis of spike-train data -tags: [tutorial, spike, animal, spike-placefield, spike-attention] +category: tutorial +tags: [spike, animal, spike-placefield, spike-attention] --- # Preprocessing and analysis of spike-train data diff --git a/tutorial/spikefield.md b/tutorial/spikefield.md index e366584d2..af4f2d1c3 100644 --- a/tutorial/spikefield.md +++ b/tutorial/spikefield.md @@ -1,6 +1,7 @@ --- title: Preprocessing and analysis of spike and local field potential data -tags: [tutorial, spike, animal, spike-attention] +category: tutorial +tags: [spike, animal, spike-attention] --- # Preprocessing and analysis of spike and local field potential data diff --git a/tutorial/timefrequencyanalysis.md b/tutorial/timefrequencyanalysis.md index c74efc872..314f37b5c 100644 --- a/tutorial/timefrequencyanalysis.md +++ b/tutorial/timefrequencyanalysis.md @@ -1,6 +1,7 @@ --- title: Time-frequency analysis using Hanning window, multitapers and wavelets -tags: [tutorial, freq, meg, eeg, plotting, meg-language] +category: tutorial +tags: [freq, meg, eeg, plotting, meg-language] --- # Time-frequency analysis using Hanning window, multitapers and wavelets @@ -362,8 +363,10 @@ This tutorial showed how to do time-frequency analysis on a single's subject MEG After having finished this tutorial on time-frequency analysis, you can continue with the [Localizing oscillatory sources using beamformer techniques](/tutorial/beamformer) tutorial if you are interested in the source-localization of the power changes or the [Cluster-based permutation tests on time-frequency data](/tutorial/cluster_permutation_freq) tutorial if you are interested how to do statistics on the time-frequency representations. -Frequently asked question -{% include seealso tag1="faq" tag2="freq" %} +### See also these frequently asked questions -Example script -{% include seealso tag1="example" tag2="freq" %} +{% include seealso category="faq" tag1="freq" %} + +### See also these examples + +{% include seealso category="example" tag1="freq" %} diff --git a/tutorial/tms-eeg.md b/tutorial/tms-eeg.md index b537e0b72..b707264fe 100644 --- a/tutorial/tms-eeg.md +++ b/tutorial/tms-eeg.md @@ -1,6 +1,7 @@ --- title: Dealing with TMS-EEG datasets -tags: [tutorial, tms, eeg, preprocessing, plotting, eeg-tms] +category: tutorial +tags: [tms, eeg, preprocessing, plotting, eeg-tms] --- # Dealing with TMS-EEG datasets diff --git a/tutorial/visual_artifact_rejection.md b/tutorial/visual_artifact_rejection.md index 0acd561c1..465a71d5a 100644 --- a/tutorial/visual_artifact_rejection.md +++ b/tutorial/visual_artifact_rejection.md @@ -1,6 +1,7 @@ --- title: Visual or manual artifact rejection -tags: [tutorial, artifact, meg, raw, preprocessing, meg-language] +category: tutorial +tags: [artifact, meg, raw, preprocessing, meg-language] --- # Visual or manual artifact rejection @@ -222,8 +223,8 @@ More information on dealing with artifacts can also be found in some example scr #### Example scripts -{% include seealso tag1="artifact" tag2="example" %} +{% include seealso category="example" tag1="artifact" %} #### Frequently asked questions -{% include seealso tag1="artifact" tag2="faq" %} +{% include seealso category="faq" tag1="artifact" %} diff --git a/workshop/aarhus/beamformingerf.md b/workshop/aarhus/beamformingerf.md index 686ee588c..f407a41e1 100644 --- a/workshop/aarhus/beamformingerf.md +++ b/workshop/aarhus/beamformingerf.md @@ -769,8 +769,10 @@ Beamforming source analysis in the time domain with DICS on EEG and MEG data has Computing event-related fields with [MNE](/tutorial/minimumnormestimate) or frequency domain beamformer [DICS](/workshop/natmeg2014/beamforming) might be of interest. More information on [common filters can be found here](/example/common_filters_in_beamforming). If you are doing a group study where you want the grid points to be the same over all subjects, [see here](/example/sourcemodel_aligned2mni). See [here for source statistics](/example/source_statistics). -See also the following FAQs: -{% include seealso tag1="source" tag2="faq" %} +### See also these frequently asked questions -See also the following example scripts: -{% include seealso tag1="source" tag2="example" %} +{% include seealso category="faq" tag1="source" %} + +### See also these examples + +{% include seealso category="example" tag1="source" %} diff --git a/workshop/madrid2019/tutorial_erp.md b/workshop/madrid2019/tutorial_erp.md index 6e30587e8..baf0289ff 100644 --- a/workshop/madrid2019/tutorial_erp.md +++ b/workshop/madrid2019/tutorial_erp.md @@ -463,14 +463,14 @@ the information, which might make it more difficult later in your analysis to figure out what you exactly did to your data. {% include markup/end %} -## See also +## Suggested further reading -Frequently asked questions: +### See also these frequently asked questions -{% include seealso tag1="faq" tag3="preprocessing" %} -{% include seealso tag1="faq" tag3="timelock" %} +{% include seealso category="faq" tag1="preprocessing" %} +{% include seealso category="faq" tag1="timelock" %} -Examples: +### See also these examples -{% include seealso tag1="example" tag3="preprocessing" %} -{% include seealso tag1="example" tag3="timelock" %} +{% include seealso category="example" tag1="preprocessing" %} +{% include seealso category="example" tag1="timelock" %} diff --git a/workshop/natmeg2014/beamforming.md b/workshop/natmeg2014/beamforming.md index 35c9722c7..574e4bfd2 100644 --- a/workshop/natmeg2014/beamforming.md +++ b/workshop/natmeg2014/beamforming.md @@ -455,6 +455,10 @@ Beamforming source analysis in the frequency domain with DICS on EEG and MEG dat Computing event-related fields with [MNE](/tutorial/minimumnormestimate) or [LCMV](/tutorial/virtual_sensors) might be of interest. More information on [common filters can be found here](/example/common_filters_in_beamforming). If you are doing a group study where you want the grid points to be the same over all subjects, [see here](/example/sourcemodel_aligned2mni). See [here for source statistics](/example/source_statistics). -Related documentation: -{% include seealso tag1="source" tag2="faq" %} -{% include seealso tag1="source" tag2="example" %} +### See also these frequently asked questions + +{% include seealso category="faq" tag1="source" %} + +### See also these examples + +{% include seealso category="example" tag1="source" %} diff --git a/workshop/natmeg2014/dipolefitting.md b/workshop/natmeg2014/dipolefitting.md index 670269224..22b9deb20 100644 --- a/workshop/natmeg2014/dipolefitting.md +++ b/workshop/natmeg2014/dipolefitting.md @@ -929,7 +929,7 @@ The EEG dipole fit is not so trustworthy as the MEG dipole fit. We can try to re How does this fit compare to the previous? Can you explain the difference? {% include markup/end %} -## Summary and conclusion +## Summary and suggested further reading We demonstrated how to use dipole fitting to estimate the location and timecourse of the auditory evoked fields and the mismatch negativity. We computed the optimal dipole fits using different constraints (i.e. assumptions) on the dipole models. The fitted dipole position of the AEF in the “deviant” condition differs from the position in the “standard” condition, which can be explained by an additional set of sources in the deviant condition at a slightly deeper location. @@ -937,13 +937,14 @@ This tutorial demonstrates how you can use different assumptions to get stable a More details on constructing volume conduction models of the head can be found [here for MEG](/tutorial/headmodel_meg) and [here for EEG](/tutorial/headmodel_meg). Other tutorials are available that demonstrate the [MNE](/tutorial/minimumnormestimate) and [Beamformer](/tutorial/beamformer) methods. An alternative method for computing the activity time series at regions of interest using beamformers is described [here](/tutorial/virtual_sensors). -## Suggested further reading +### See also these tutorials -Tutorials: -{% include seealso tag1="source" tag2="headmodel" tag3="tutorial" %} +{% include seealso category="tutorial" tag1="source" tag2="headmodel" %} -FAQs: -{% include seealso tag1="source" tag2="headmodel" tag3="faq" %} +### See also these frequently asked questions -Example scripts: -{% include seealso tag1="source" tag2="headmodel" tag3="example" %} +{% include seealso category="faq" tag1="source" tag2="headmodel" %} + +### See also these examples + +{% include seealso category="example" tag1="source" tag2="headmodel" %} diff --git a/workshop/natmeg2014/statistics.md b/workshop/natmeg2014/statistics.md index de3f2a6f6..d6fe32e1f 100644 --- a/workshop/natmeg2014/statistics.md +++ b/workshop/natmeg2014/statistics.md @@ -398,17 +398,18 @@ Again we can visualize the results of the statistical comparison. Since we have This tutorial demonstrated how to do the statistical analysis on the MEG channels that are present in the dataset. You can repeat the similar procedure for the EEG channels. {% include markup/end %} -## Summary and conclusion +## Summary and suggested further reading This tutorial showed you how to perform parametric and non-parametric statistics in FieldTrip. It addresses multiple ways of dealing with the multiple comparison problem. Furthermore, it demonstrated how to plot the part of the data that show the significant effect. -## Suggested further reading +### See also these tutorials -Tutorials: -{% include seealso tag1="statistics" tag2="tutorial" %} +{% include seealso category="tutorial" tag1="statistics" %} -FAQs: -{% include seealso tag1="statistics" tag2="faq" %} +### See also these frequently asked questions -Example scripts: -{% include seealso tag1="statistics" tag2="example" %} +{% include seealso category="faq" tag1="statistics" %} + +### See also these examples + +{% include seealso category="example" tag1="statistics" %} diff --git a/workshop/neuroimaging2/timefrequencyanalysis.md b/workshop/neuroimaging2/timefrequencyanalysis.md index e624fdbb2..b292fb7f1 100644 --- a/workshop/neuroimaging2/timefrequencyanalysis.md +++ b/workshop/neuroimaging2/timefrequencyanalysis.md @@ -348,11 +348,13 @@ A final more detailed note on what multitapering actually does. While the fundam Here are links to other documentation that deals with frequency and time-frequency analysis. -Frequently asked questions: -{% include seealso tag1="faq" tag2="freq" %} +### Frequently asked questions -Example scripts: -{% include seealso tag1="example" tag2="freq" %} +{% include seealso category="faq" tag1="freq" %} + +### Examples + +{% include seealso category="example" tag1="freq" %} ## References diff --git a/workshop/ohbm2018/inverse.md b/workshop/ohbm2018/inverse.md index b58daedc6..21062b3c2 100644 --- a/workshop/ohbm2018/inverse.md +++ b/workshop/ohbm2018/inverse.md @@ -214,17 +214,17 @@ Changing parameters of the forward model influences the Inverse solutions. Play In this tutorial, we learned how to solve the inverse problem. For this, we used the preprocessed functional data and the forward model. The inverse techniques we used in this tutorial were "Dipole Fit" and "Minimum Norm Estimation". We used both techniques with the different parameters for EEG and MEG. -Here are some related FAQs +### See also these frequently asked questions -{% include seealso tag1="faq" tag2="electrode" %} -{% include seealso tag1="faq" tag2="headmodel" tag3="eeg" %} +{% include seealso category="faq" tag1="electrode" %} +{% include seealso category="faq" tag1="headmodel" tag3="eeg" %} -and some related examples: +### See also these examples -{% include seealso tag1="example" tag2="electrode" %} -{% include seealso tag1="example" tag2="headmodel" tag3="eeg" %} +{% include seealso category="example" tag1="electrode" %} +{% include seealso category="example" tag1="headmodel" tag3="eeg" %} -and other tutorials +### See also these tutorials -{% include seealso tag1="tutorial" tag2="electrode" %} -{% include seealso tag1="tutorial" tag2="headmodel" tag3="eeg" %} +{% include seealso category="tutorial" tag1="electrode" %} +{% include seealso category="tutorial" tag1="headmodel" tag3="eeg" %} diff --git a/workshop/oxford2019/sensor_analysis_plusminus.md b/workshop/oxford2019/sensor_analysis_plusminus.md index 05470d361..e17687dbe 100644 --- a/workshop/oxford2019/sensor_analysis_plusminus.md +++ b/workshop/oxford2019/sensor_analysis_plusminus.md @@ -321,12 +321,14 @@ The tutorial on which this one was based contains an extra section on how to per Alternatively, or additionally, you could read through the tutorial on [time-frequency analysis](/tutorial/timefrequencyanalysis), which provides more details on the various tapers available and their implications. Alternative follow-ups would be the tutorial on [beamformers](/tutorial/beamformer) for source reconstruction (potentially the [extended beamforming tutorial](/tutorial/beamformingextended) on the same data set as the present one) or, for details on statistics, one of the statistics [tutorials](/tutorial). -FAQ: -{% include seealso tag1="faq" tag2="preprocessing" %} -{% include seealso tag1="faq" tag2="timelock" %} -{% include seealso tag1="faq" tag2="freq" %} - -Example scripts: -{% include seealso tag1="example" tag2="preprocessing" %} -{% include seealso tag1="example" tag2="timelock" %} -{% include seealso tag1="example" tag2="freq" %} +### See also these frequently asked questions + +{% include seealso category="faq" tag1="preprocessing" %} +{% include seealso category="faq" tag1="timelock" %} +{% include seealso category="faq" tag1="freq" %} + +### See also these examples + +{% include seealso category="example" tag1="preprocessing" %} +{% include seealso category="example" tag1="timelock" %} +{% include seealso category="example" tag1="freq" %}