From 70f95ba7d2cb4d6173ea1daa39ad056aa0218fd6 Mon Sep 17 00:00:00 2001
From: Qianqian Fang <fangqq@gmail.com>
Date: Thu, 22 Aug 2024 01:08:07 -0400
Subject: [PATCH] [pmcx] fix CI error for pmcx

---
 pmcx/README.md        | 2 +-
 pmcx/pmcx/__init__.py | 2 +-
 pmcx/setup.py         | 2 +-
 src/pmcx.cpp          | 4 ++--
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/pmcx/README.md b/pmcx/README.md
index 4713e167..1ad5b40d 100644
--- a/pmcx/README.md
+++ b/pmcx/README.md
@@ -4,7 +4,7 @@
 
 - Copyright: (C) Matin Raayai Ardakani (2022-2023) <raayaiardakani.m at northeastern.edu>, Qianqian Fang (2019-2024) <q.fang at neu.edu>, Fan-Yu Yen (2023-2024) <yen.f at northeastern.edu>
 - License: GNU Public License V3 or later
-- Version: 0.3.3
+- Version: 0.3.4
 - URL: https://pypi.org/project/pmcx/
 - Github: https://github.com/fangq/mcx
 
diff --git a/pmcx/pmcx/__init__.py b/pmcx/pmcx/__init__.py
index eb29e4cd..7bf35da2 100644
--- a/pmcx/pmcx/__init__.py
+++ b/pmcx/pmcx/__init__.py
@@ -49,7 +49,7 @@
 # from .files import loadmc2, loadmch, load, save
 from .bench import bench
 
-__version__ = "0.3.3"
+__version__ = "0.3.4"
 
 __all__ = (
     "gpuinfo",
diff --git a/pmcx/setup.py b/pmcx/setup.py
index 860c4430..40c33098 100644
--- a/pmcx/setup.py
+++ b/pmcx/setup.py
@@ -123,7 +123,7 @@ def build_extension(self, ext):
 setup(
     name="pmcx",
     packages=["pmcx"],
-    version="0.3.3",
+    version="0.3.4",
     requires=["numpy"],
     license="GPLv3+",
     author="Matin Raayai Ardakani, Qianqian Fang, Fan-Yu Yen",
diff --git a/src/pmcx.cpp b/src/pmcx.cpp
index 87373a2c..8249dbeb 100644
--- a/src/pmcx.cpp
+++ b/src/pmcx.cpp
@@ -698,7 +698,7 @@ void parse_config(const py::dict& user_cfg, Config& mcx_config) {
             throw py::value_error("the 'polprop' field must a 2D array");
         }
 
-        if ((buffer_info.shape.size() > 1 && buffer_info.shape.at(0) > 0 && buffer_info.shape.at(1) != 5) || buffer_info.shape.size() == 1 && buffer_info.shape.at(0) != 5) {
+        if ((buffer_info.shape.size() > 1 && buffer_info.shape.at(0) > 0 && buffer_info.shape.at(1) != 5) || (buffer_info.shape.size() == 1 && buffer_info.shape.at(0) != 5)) {
             throw py::value_error("the 'polprop' field must have 5 columns (mua, radius, rho, n_sph,n_bkg)");
         }
 
@@ -1007,7 +1007,7 @@ void parse_config(const py::dict& user_cfg, Config& mcx_config) {
         auto logfile_id_value = user_cfg["flog"];
 
         if (py::int_::check_(logfile_id_value)) {
-            auto logid = py::int_(logfile_id_value);
+            int logid = py::int_(logfile_id_value);
             mcx_config.flog = (logid >= 2 ? stderr : (logid == 1 ? stdout : (mcx_config.printnum = -1, stdout)));
         } else if (py::str::check_(logfile_id_value)) {
             std::string logfile_id_string_value = py::str(logfile_id_value);