From 654dff19bb9e1388d03c505d28123f4715717897 Mon Sep 17 00:00:00 2001
From: Qianqian Fang <fangqq@gmail.com>
Date: Wed, 5 Jun 2024 17:44:36 -0400
Subject: [PATCH] [bug] fix outputtype error in json2mcx, reformat with
 miss_hit

---
 mcxlab/mcxlab.m  | 2 +-
 utils/json2mcx.m | 2 +-
 utils/mcxsvmc.m  | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/mcxlab/mcxlab.m b/mcxlab/mcxlab.m
index cb0ac520..4685723c 100644
--- a/mcxlab/mcxlab.m
+++ b/mcxlab/mcxlab.m
@@ -591,7 +591,7 @@
         [traj.id, idx] = sort(traj.id);
         traj.pos = traj.pos(idx, :);
         traj.srcid = int32(data(6, :)');
-        if(size(data, 1) >= 10)
+        if (size(data, 1) >= 10)
             traj.iquv = data(7:10, :)';
         end
         traj.data = [single(traj.id)'; data(2:end, idx)];
diff --git a/utils/json2mcx.m b/utils/json2mcx.m
index 0f3dce5b..5aadadf7 100644
--- a/utils/json2mcx.m
+++ b/utils/json2mcx.m
@@ -124,7 +124,7 @@
 cfg = copycfg(cfg, 'isnormalize', json.Session, 'DoNormalize');
 cfg = copycfg(cfg, 'outputformat', json.Session, 'OutputFormat');
 cfg = copycfg(cfg, 'outputtype', json.Session, 'OutputType');
-if (length(cfg.outputtype) == 1)
+if (isfield(cfg, 'outputtype') && length(cfg.outputtype) == 1)
     otypemap = struct('x', 'flux', 'f', 'fluence', 'e', 'energy', 'j', 'jacobian', 'p', 'nscat', 'm', 'wm', 'r', 'rf', 'l', 'length');
     if (~isfield(otypemap, cfg.outputtype))
         error('output type %s is not supported', cfg.outputtype);
diff --git a/utils/mcxsvmc.m b/utils/mcxsvmc.m
index ae36a531..dd6cd62e 100644
--- a/utils/mcxsvmc.m
+++ b/utils/mcxsvmc.m
@@ -153,7 +153,7 @@
 %% computing total area and normal vector for each boundary voxel
 areas = elemvolume(iso.vertices, iso.faces);
 normals = surfacenorm(iso.vertices, iso.faces);
-if(isoctavemesh)
+if (isoctavemesh)
     normals = -normals;
 end
 centroids = meshcentroid(iso.vertices, iso.faces);