thesis.tex

\documentclass[12pt,a4paper,twoside,openright]{report}
\let\openright=\cleardoublepage

\input{metadata}

\usepackage[a-2u]{pdfx}

\ifEN\else\usepackage[czech,shorthands=off]{babel}\fi

% See https://en.wikipedia.org/wiki/Canons_of_page_construction before
% modifying the size of printable area. LaTeX defaults are great.
% If you feel it would help anything, you can enlarge the printable area a bit:
%\usepackage[textwidth=390pt,textheight=630pt]{geometry}
% The official recommendation expands the area quite a bit (looks pretty harsh):
%\usepackage[textwidth=145mm,textheight=247mm]{geometry}

%%% TYPICAL FONT CHOICES (uncomment what you like) %%%
% Recommended combo: Libertinus (autoselects Biolinum for sans) and everything
% else (math+tt) comes from Latin Modern)
\usepackage{lmodern}
\usepackage[mono=false]{libertinus}

% For the "classic" LaTeX fonts (very good for pure math theses), simply
% comment out the libertinus package above.

% IBM Plex font suite: nice, but requires us to fine-tune the sizes and does
% not directly support small caps (\textsc):
%\usepackage[usefilenames,RM={Scale=0.88},SS={Scale=0.88},SScon={Scale=0.88},TT={Scale=0.88},DefaultFeatures={Ligatures=Common}]{plex-otf}

% TeX Gyre combo (Pagella+Heros+Cursor)
%\usepackage{fontspec}
%\setmainfont{TeX Gyre Pagella}
%\setsansfont{TeX Gyre Heros}
%\setmonofont{TeX Gyre Cursor}

% some useful packages
\usepackage{microtype}
\usepackage{amsmath,amsfonts,amsthm,bm}
\usepackage{graphicx}
\usepackage{xcolor}
\usepackage{booktabs}
\usepackage{caption}
\usepackage{floatrow}

% Bibliography formatting.
% CHECK THE REQUIREMENTS OF YOUR DEPARTMENT AND FACULTY ON THE CITATION FORMAT!
%
% These are relatively "safe" default options that most people use:
\usepackage[natbib,style=numeric,sorting=none]{biblatex}
% alternative with alphanumeric citations (more informative than numbers, and
% more common in computer science journals):
%\usepackage[natbib,style=alphabetic]{biblatex}
%
% ALTERNATIVES THAT CONFORM TO ISO690
% ISO690 is not the greatest citation format ever, but may be formally
% required at Charles University, depending on your faculty and department.
%\usepackage[natbib,style=iso-numeric,sorting=none]{biblatex}
%\usepackage[natbib,style=iso-alphabetic]{biblatex}
% You might want to add extra options such as `maxbibnames=6,maxcitenames=2`
% here to further conform to some of the formatting requirements (see below for
% details). Again, consult your faculty rules.
%
% Additional option choices:
%  - add `giveninits=true` to typeset "E. A. Poe" instead of full Edgar Allan
%  - `terseinits=true` additionaly shortens it to nature-like "Poe EA"
%  - add `maxnames=10` to limit (or loosen) the maximum number of authors in
%    bibliography entry before shortening to `et al.` (useful when referring to
%    book collections that may have hundreds of authors)
%  - use `maxcitenames=2` to finetune the amount of authors listed in text-cite
%    commands (\citet). Corresponding option that only affects the bibliography
%    is `maxbibnames=10`.
%  - `sorting=none` causes the bibliography list to be ordered by the order of
%    citation as they appear in the text, which is usually the desired behavior
%    with numeric citations. Additionally you can use a style like
%    `numeric-comp` that compresses the long lists of citations such as
%    [1,2,3,4,5,6,7,8] to simpler [1--8]. This is especially useful if you plan
%    to add tremendous amounts of citations, as usual in life sciences and
%    bioinformatics.
%  - if you don't like the "In:" appearing in the bibliography, use the
%    extended style (`ext-numeric` or `ext-alphabetic`), and add option
%    `articlein=false`.
%
% possibly reverse the names of the authors with the default styles:
%\DeclareNameAlias{default}{family-given}

% load the file with bibliography entries
\addbibresource{refs.bib}

% remove this if you won't use fancy verbatim environments
\usepackage{fancyvrb}

% remove this if you won't typeset TikZ graphics
\usepackage{tikz}
\usetikzlibrary{positioning} %add libraries as needed (shapes, decorations, ...)

% remove this if you won't typeset any pseudocode
\usepackage{algpseudocode}
\usepackage{algorithm}

% remove this if you won't list any source code
\usepackage{listings}


\hypersetup{unicode}
\hypersetup{breaklinks=true}

\usepackage[noabbrev]{cleveref}

\input{todos} % remove this before compiling the final version

\input{macros} % use this file for various custom definitions


\begin{document}

\include{title}

\tableofcontents

\include{intro}
\include{ch1}
\include{ch2}
\include{ch3}
\include{conclusion}
\include{bibliography}

\appendix
\include{howto}

% if your attachments are complicated, describe them in a separate appendix
%\include{attachments}

\openright
\end{document}