MiniAn is an analysis pipeline and visualization tool inspired by both CaImAn and MIN1PIPE package specifically for Miniscope data.
- Create a new conda env:
conda create -y --name minian - Activate the environment:
conda activate minian - Install MiniAn:
conda install -y -c conda-forge minian - Install the pipeline notebooks:
minian-install --notebooks - Optional install the demo movies:
minian-install --demo - Fire up jupyter:
jupyter notebookand open the notebook "pipeline.ipynb"
MiniAn documentation is hosted on ReadtheDocs at:
https://minian.readthedocs.io/
We would love feedback and contribution from the community! See the contribution page for more detail!
This project is licensed under GNU GPLv3.