This is a bugfix release that addresses installation problems, an occasional issue with segmentation, and a command option that had been non-functional.
Fixes
- Re-enable the
coverage -q/--min-mapq
option. It had stopped working at some point due to a type coercion issue. (#912; thanks @rach-kennedy) - Prevent CBS segmentation failures due to nulls in input .cnr. It's not clear what causes nulls to appear in .cnr files, but when they do, segmentation failed; this is happened silently in
batch
mode and could be difficult for user to triage when it happened. (#914, #436, #582, maybe #760, #896, #901 and nf-core/sarek#1625). - Raise max pomegranate dependency version from <=0.14.9 to <1.0.0 to avoid conflicts during installation. (#911, #890)
New Contributors
- @rach-kennedy made their first contribution in #912
Full Changelog: v0.9.11...v0.9.12