.pre-commit-config.yaml

fail_fast: false
default_language_version:
  python: python3
default_stages:
  - commit
  - push
minimum_pre_commit_version: 2.16.0
repos:
  - repo: https://github.com/pre-commit/mirrors-prettier
    rev: v2.5.1
    hooks:
      - id: prettier
        # Newer versions of node don't work on systems that have an older version of GLIBC
        # (in particular Ubuntu 18.04 and Centos 7)
        # EOL of Centos 7 is in 2024-06, we can probably get rid of this then.
        # See https://github.com/scverse/cookiecutter-scverse/issues/143 and
        # https://github.com/jupyterlab/jupyterlab/issues/12675
        language_version: "17.9.1"
  - repo: https://github.com/psf/black
    rev: 22.3.0
    hooks:
      - id: black-jupyter
        exclude: |
          (?x)^(
              jupyter-book/conditions/differential_gene_expression.ipynb|
              .mypy_cache|
              .pytest_cache|
              dist
          )$