diff --git a/ABLMost_8H_source.html b/ABLMost_8H_source.html index 78abaa42b9..4b8b48b2d8 100644 --- a/ABLMost_8H_source.html +++ b/ABLMost_8H_source.html @@ -158,381 +158,393 @@
70  amrex::Abort("Undefined MOST flux type!");
71  }
72 
-
73  // Get surface temperature
-
74  auto erf_st = pp.query("most.surf_temp", surf_temp);
-
75 
-
76  // Custom type user must specify the fluxes
-
77  if (flux_type == FluxCalcType::CUSTOM) {
-
78  theta_type = ThetaCalcType::HEAT_FLUX;
-
79  pp.query("most.ustar", custom_ustar);
-
80  pp.query("most.tstar", custom_tstar);
-
81  pp.query("most.qstar", custom_qstar);
-
82  if (custom_qstar != 0) {
-
83  AMREX_ASSERT_WITH_MESSAGE(use_moisture, "Specified custom MOST qv flux without moisture model!");
-
84  }
-
85  amrex::Print() << "Using specified ustar, tstar, qstar for MOST = "
-
86  << custom_ustar << " "
-
87  << custom_tstar << " "
-
88  << custom_qstar << std::endl;
-
89 
-
90  // Specify surface temperature or surface flux
-
91  } else {
-
92  if (erf_st) {
-
93  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
94  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
-
95  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
-
96  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
-
97  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
-
98  }
-
99  } else {
-
100  pp.query("most.surf_temp_flux", surf_temp_flux);
-
101  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
-
102  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
-
103  }
-
104  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
-
105  theta_type = ThetaCalcType::HEAT_FLUX;
-
106  } else {
-
107  theta_type = ThetaCalcType::ADIABATIC;
-
108  }
-
109  }
-
110  }
-
111 
-
112  // Specify how to compute the surface flux over land (if there is any)
-
113  std::string rough_land_string{"constant"};
-
114  pp.query("most.roughness_type_land", rough_land_string);
-
115  if (rough_land_string == "constant") {
-
116  rough_type_land = RoughCalcType::CONSTANT;
-
117  } else {
-
118  amrex::Abort("Undefined MOST roughness type for land!");
-
119  }
-
120 
-
121  // Specify how to compute the surface flux over sea (if there is any)
-
122  std::string rough_sea_string{"charnock"};
-
123  pp.query("most.roughness_type_sea", rough_sea_string);
-
124  if (rough_sea_string == "charnock") {
-
125  rough_type_sea = RoughCalcType::CHARNOCK;
-
126  pp.query("most.charnock_constant",cnk_a);
-
127  } else if (rough_sea_string == "modified_charnock") {
-
128  rough_type_sea = RoughCalcType::MODIFIED_CHARNOCK;
-
129  pp.query("most.modified_charnock_depth",depth);
-
130  } else if (rough_sea_string == "wave_coupled") {
-
131  rough_type_sea = RoughCalcType::WAVE_COUPLED;
-
132  } else {
-
133  amrex::Abort("Undefined MOST roughness type for sea!");
-
134  }
-
135 
-
136  // Size the MOST params for all levels
-
137  int nlevs = m_geom.size();
-
138  z_0.resize(nlevs);
-
139  u_star.resize(nlevs);
-
140  t_star.resize(nlevs);
-
141  q_star.resize(nlevs);
-
142  t_surf.resize(nlevs);
-
143  olen.resize(nlevs);
-
144 
-
145  // Get pointers to SST and LANDMASK data
-
146  m_sst_lev.resize(nlevs);
-
147  m_lmask_lev.resize(nlevs);
+
73  // Check if we do stress rotations for terrain
+
74  pp.query("most.terrain_rotate",m_rotate);
+
75  if (m_rotate) AMREX_ASSERT_WITH_MESSAGE((z_phys_nd[0].get()), "Stress rotations are only valid with terrain!");
+
76 
+
77  // Get surface temperature
+
78  auto erf_st = pp.query("most.surf_temp", surf_temp);
+
79 
+
80  // Custom type user must specify the fluxes
+
81  if (flux_type == FluxCalcType::CUSTOM) {
+
82  theta_type = ThetaCalcType::HEAT_FLUX;
+
83  pp.query("most.ustar", custom_ustar);
+
84  pp.query("most.tstar", custom_tstar);
+
85  pp.query("most.qstar", custom_qstar);
+
86  if (custom_qstar != 0) {
+
87  AMREX_ASSERT_WITH_MESSAGE(use_moisture, "Specified custom MOST qv flux without moisture model!");
+
88  }
+
89  amrex::Print() << "Using specified ustar, tstar, qstar for MOST = "
+
90  << custom_ustar << " "
+
91  << custom_tstar << " "
+
92  << custom_qstar << std::endl;
+
93 
+
94  // Specify surface temperature or surface flux
+
95  } else {
+
96  if (erf_st) {
+
97  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
+
98  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
+
99  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
+
100  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
+
101  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
102  }
+
103  } else {
+
104  pp.query("most.surf_temp_flux", surf_temp_flux);
+
105  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
+
106  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
107  }
+
108  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
+
109  theta_type = ThetaCalcType::HEAT_FLUX;
+
110  } else {
+
111  theta_type = ThetaCalcType::ADIABATIC;
+
112  }
+
113  }
+
114  }
+
115 
+
116  // Specify how to compute the surface flux over land (if there is any)
+
117  std::string rough_land_string{"constant"};
+
118  pp.query("most.roughness_type_land", rough_land_string);
+
119  if (rough_land_string == "constant") {
+
120  rough_type_land = RoughCalcType::CONSTANT;
+
121  } else {
+
122  amrex::Abort("Undefined MOST roughness type for land!");
+
123  }
+
124 
+
125  // Specify how to compute the surface flux over sea (if there is any)
+
126  std::string rough_sea_string{"charnock"};
+
127  pp.query("most.roughness_type_sea", rough_sea_string);
+
128  if (rough_sea_string == "charnock") {
+
129  rough_type_sea = RoughCalcType::CHARNOCK;
+
130  pp.query("most.charnock_constant",cnk_a);
+
131  } else if (rough_sea_string == "modified_charnock") {
+
132  rough_type_sea = RoughCalcType::MODIFIED_CHARNOCK;
+
133  pp.query("most.modified_charnock_depth",depth);
+
134  } else if (rough_sea_string == "wave_coupled") {
+
135  rough_type_sea = RoughCalcType::WAVE_COUPLED;
+
136  } else {
+
137  amrex::Abort("Undefined MOST roughness type for sea!");
+
138  }
+
139 
+
140  // Size the MOST params for all levels
+
141  int nlevs = m_geom.size();
+
142  z_0.resize(nlevs);
+
143  u_star.resize(nlevs);
+
144  t_star.resize(nlevs);
+
145  q_star.resize(nlevs);
+
146  t_surf.resize(nlevs);
+
147  olen.resize(nlevs);
148 
-
149  for (int lev(0); lev<nlevs; ++lev) {
-
150  int nt_tot_sst = sst_lev[lev].size();
-
151  m_sst_lev[lev].resize(nt_tot_sst);
-
152  for (int nt(0); nt<nt_tot_sst; ++nt) {
-
153  m_sst_lev[lev][nt] = sst_lev[lev][nt].get();
-
154  }
-
155  int nt_tot_lmask = lmask_lev[lev].size();
-
156  m_lmask_lev[lev].resize(nt_tot_lmask);
-
157  for (int nt(0); nt<nt_tot_lmask; ++nt) {
-
158  m_lmask_lev[lev][nt] = lmask_lev[lev][nt].get();
-
159  }
-
160  } // lev
-
161 
-
162  // Get pointers to LSM data and Fluxes
-
163  m_lsm_data_lev.resize(nlevs);
-
164  m_lsm_flux_lev.resize(nlevs);
-
165  for (int lev(0); lev<nlevs; ++lev) {
-
166  int nvar = lsm_data[lev].size();
-
167  m_lsm_data_lev[lev].resize(nvar);
-
168  m_lsm_flux_lev[lev].resize(nvar);
-
169  for (int n(0); n<nvar; ++n) {
-
170  m_lsm_data_lev[lev][n] = lsm_data[lev][n];
-
171  m_lsm_flux_lev[lev][n] = lsm_flux[lev][n];
-
172  }
-
173  } // lev
-
174 
-
175  // Get pointers to wave data
-
176  m_Hwave_lev.resize(nlevs);
-
177  m_Lwave_lev.resize(nlevs);
-
178  m_eddyDiffs_lev.resize(nlevs);
-
179  for (int lev(0); lev<nlevs; ++lev) {
-
180  m_Hwave_lev[lev] = Hwave[lev].get();
-
181  m_Lwave_lev[lev] = Lwave[lev].get();
-
182  m_eddyDiffs_lev[lev] = eddyDiffs[lev].get();
-
183  }
-
184 
-
185  for (int lev = 0; lev < nlevs; lev++) {
-
186  // Attributes for MFs and FABs
-
187  //--------------------------------------------------------
-
188  auto& mf = vars_old[lev][Vars::cons];
-
189  // Create a 2D ba, dm, & ghost cells
-
190  amrex::BoxArray ba = mf.boxArray();
-
191  amrex::BoxList bl2d = ba.boxList();
-
192  for (auto& b : bl2d) {
-
193  b.setRange(2,0);
-
194  }
-
195  amrex::BoxArray ba2d(std::move(bl2d));
-
196  const amrex::DistributionMapping& dm = mf.DistributionMap();
-
197  const int ncomp = 1;
-
198  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
-
199 
-
200  // Z0 heights FAB
-
201  //--------------------------------------------------------
-
202  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng);
-
203  bx.setSmall(2,0);
-
204  bx.setBig(2,0);
-
205  z_0[lev].resize(bx,1);
-
206  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
-
207 
-
208  // 2D MFs for U*, T*, T_surf
-
209  //--------------------------------------------------------
-
210  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
211  u_star[lev]->setVal(1.E34);
-
212 
-
213  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
214  t_star[lev]->setVal(1.E34);
-
215 
-
216  q_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
217  q_star[lev]->setVal(1.E34);
-
218 
-
219  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
220  olen[lev]->setVal(1.E34);
-
221 
-
222  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
223 
-
224  // TODO: Do we want lsm_data to have theta at 0 index always?
-
225  // Do we want an external enum struct for indexing?
-
226  if (m_sst_lev[lev][0] || m_lsm_data_lev[lev][0]) {
-
227  // Valid SST or LSM data; t_surf set before computing fluxes (avoids extended lambda capture)
-
228  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
229  } else if (erf_st) {
-
230  t_surf[lev]->setVal(surf_temp);
-
231  } else {
-
232  t_surf[lev]->setVal(0.0);
-
233  }
-
234  }// lev
-
235  }
-
236 
-
237  void
-
238  update_fluxes (const int& lev,
-
239  const amrex::Real& time,
-
240  int max_iters = 25);
-
241 
-
242  template <typename FluxIter>
-
243  void
-
244  compute_fluxes (const int& lev,
-
245  const int& max_iters,
-
246  const FluxIter& most_flux,
-
247  bool is_land);
-
248 
-
249  void
-
250  impose_most_bcs (const int& lev,
-
251  const amrex::Vector<amrex::MultiFab*>& mfs,
-
252  amrex::MultiFab* xzmom_flux, amrex::MultiFab* zxmom_flux,
-
253  amrex::MultiFab* yzmom_flux, amrex::MultiFab* zymom_flux,
-
254  amrex::MultiFab* heat_flux,
-
255  amrex::MultiFab* z_phys);
-
256 
-
257  template<typename FluxCalc>
-
258  void
-
259  compute_most_bcs (const int& lev,
-
260  const amrex::Vector<amrex::MultiFab*>& mfs,
-
261  amrex::MultiFab* xzmom_flux, amrex::MultiFab* zxmom_flux,
-
262  amrex::MultiFab* yzmom_flux, amrex::MultiFab* zymom_flux,
-
263  amrex::MultiFab* heat_flux,
-
264  amrex::MultiFab* z_phys,
-
265  const amrex::Real& dz_no_terrain,
-
266  const FluxCalc& flux_comp);
-
267 
-
268  void
-
269  time_interp_sst (const int& lev,
-
270  const amrex::Real& time);
-
271 
-
272  void
-
273  get_lsm_tsurf (const int& lev);
-
274 
-
275  void
-
276  update_surf_temp (const amrex::Real& time)
-
277  {
-
278  if (surf_heating_rate != 0) {
-
279  int nlevs = m_geom.size();
-
280  for (int lev = 0; lev < nlevs; lev++)
-
281  {
-
282  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
-
283  amrex::Print() << "Surface temp at t=" << time
-
284  << ": "
-
285  << surf_temp + surf_heating_rate*time
-
286  << std::endl;
-
287  }
-
288  }
-
289  }
-
290 
-
291  void
-
292  update_mac_ptrs (const int& lev,
-
293  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
-
294  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim,
-
295  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qv_prim)
-
296  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim); }
-
297 
-
298  const amrex::MultiFab*
-
299  get_u_star (const int& lev) { return u_star[lev].get(); }
-
300 
-
301  const amrex::MultiFab*
-
302  get_t_star (const int& lev) { return t_star[lev].get(); }
+
149  // Get pointers to SST and LANDMASK data
+
150  m_sst_lev.resize(nlevs);
+
151  m_lmask_lev.resize(nlevs);
+
152 
+
153  for (int lev(0); lev<nlevs; ++lev) {
+
154  int nt_tot_sst = sst_lev[lev].size();
+
155  m_sst_lev[lev].resize(nt_tot_sst);
+
156  for (int nt(0); nt<nt_tot_sst; ++nt) {
+
157  m_sst_lev[lev][nt] = sst_lev[lev][nt].get();
+
158  }
+
159  int nt_tot_lmask = lmask_lev[lev].size();
+
160  m_lmask_lev[lev].resize(nt_tot_lmask);
+
161  for (int nt(0); nt<nt_tot_lmask; ++nt) {
+
162  m_lmask_lev[lev][nt] = lmask_lev[lev][nt].get();
+
163  }
+
164  } // lev
+
165 
+
166  // Get pointers to LSM data and Fluxes
+
167  m_lsm_data_lev.resize(nlevs);
+
168  m_lsm_flux_lev.resize(nlevs);
+
169  for (int lev(0); lev<nlevs; ++lev) {
+
170  int nvar = lsm_data[lev].size();
+
171  m_lsm_data_lev[lev].resize(nvar);
+
172  m_lsm_flux_lev[lev].resize(nvar);
+
173  for (int n(0); n<nvar; ++n) {
+
174  m_lsm_data_lev[lev][n] = lsm_data[lev][n];
+
175  m_lsm_flux_lev[lev][n] = lsm_flux[lev][n];
+
176  }
+
177  } // lev
+
178 
+
179  // Get pointers to wave data
+
180  m_Hwave_lev.resize(nlevs);
+
181  m_Lwave_lev.resize(nlevs);
+
182  m_eddyDiffs_lev.resize(nlevs);
+
183  for (int lev(0); lev<nlevs; ++lev) {
+
184  m_Hwave_lev[lev] = Hwave[lev].get();
+
185  m_Lwave_lev[lev] = Lwave[lev].get();
+
186  m_eddyDiffs_lev[lev] = eddyDiffs[lev].get();
+
187  }
+
188 
+
189  for (int lev = 0; lev < nlevs; lev++) {
+
190  // Attributes for MFs and FABs
+
191  //--------------------------------------------------------
+
192  auto& mf = vars_old[lev][Vars::cons];
+
193  // Create a 2D ba, dm, & ghost cells
+
194  amrex::BoxArray ba = mf.boxArray();
+
195  amrex::BoxList bl2d = ba.boxList();
+
196  for (auto& b : bl2d) {
+
197  b.setRange(2,0);
+
198  }
+
199  amrex::BoxArray ba2d(std::move(bl2d));
+
200  const amrex::DistributionMapping& dm = mf.DistributionMap();
+
201  const int ncomp = 1;
+
202  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
+
203 
+
204  // Z0 heights FAB
+
205  //--------------------------------------------------------
+
206  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng);
+
207  bx.setSmall(2,0);
+
208  bx.setBig(2,0);
+
209  z_0[lev].resize(bx,1);
+
210  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
+
211 
+
212  // 2D MFs for U*, T*, T_surf
+
213  //--------------------------------------------------------
+
214  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
215  u_star[lev]->setVal(1.E34);
+
216 
+
217  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
218  t_star[lev]->setVal(1.E34);
+
219 
+
220  q_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
221  q_star[lev]->setVal(1.E34);
+
222 
+
223  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
224  olen[lev]->setVal(1.E34);
+
225 
+
226  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
227 
+
228  // TODO: Do we want lsm_data to have theta at 0 index always?
+
229  // Do we want an external enum struct for indexing?
+
230  if (m_sst_lev[lev][0] || m_lsm_data_lev[lev][0]) {
+
231  // Valid SST or LSM data; t_surf set before computing fluxes (avoids extended lambda capture)
+
232  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
+
233  } else if (erf_st) {
+
234  t_surf[lev]->setVal(surf_temp);
+
235  } else {
+
236  t_surf[lev]->setVal(0.0);
+
237  }
+
238  }// lev
+
239  }
+
240 
+
241  void
+
242  update_fluxes (const int& lev,
+
243  const amrex::Real& time,
+
244  int max_iters = 25);
+
245 
+
246  template <typename FluxIter>
+
247  void
+
248  compute_fluxes (const int& lev,
+
249  const int& max_iters,
+
250  const FluxIter& most_flux,
+
251  bool is_land);
+
252 
+
253  void
+
254  impose_most_bcs (const int& lev,
+
255  const amrex::Vector<amrex::MultiFab*>& mfs,
+
256  amrex::MultiFab* xzmom_flux, amrex::MultiFab* zxmom_flux,
+
257  amrex::MultiFab* yzmom_flux, amrex::MultiFab* zymom_flux,
+
258  amrex::MultiFab* heat_flux,
+
259  amrex::MultiFab* qv_flux,
+
260  amrex::MultiFab* z_phys);
+
261 
+
262  template<typename FluxCalc>
+
263  void
+
264  compute_most_bcs (const int& lev,
+
265  const amrex::Vector<amrex::MultiFab*>& mfs,
+
266  amrex::MultiFab* xzmom_flux, amrex::MultiFab* zxmom_flux,
+
267  amrex::MultiFab* yzmom_flux, amrex::MultiFab* zymom_flux,
+
268  amrex::MultiFab* heat_flux,
+
269  amrex::MultiFab* qv_flux,
+
270  amrex::MultiFab* z_phys,
+
271  const amrex::Real& dz_no_terrain,
+
272  const FluxCalc& flux_comp);
+
273 
+
274  void
+
275  time_interp_sst (const int& lev,
+
276  const amrex::Real& time);
+
277 
+
278  void
+
279  get_lsm_tsurf (const int& lev);
+
280 
+
281  void
+
282  update_surf_temp (const amrex::Real& time)
+
283  {
+
284  if (surf_heating_rate != 0) {
+
285  int nlevs = m_geom.size();
+
286  for (int lev = 0; lev < nlevs; lev++)
+
287  {
+
288  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
+
289  amrex::Print() << "Surface temp at t=" << time
+
290  << ": "
+
291  << surf_temp + surf_heating_rate*time
+
292  << std::endl;
+
293  }
+
294  }
+
295  }
+
296 
+
297  void
+
298  update_mac_ptrs (const int& lev,
+
299  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
+
300  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim,
+
301  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qv_prim)
+
302  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim); }
303 
304  const amrex::MultiFab*
-
305  get_olen (const int& lev) { return olen[lev].get(); }
+
305  get_u_star (const int& lev) { return u_star[lev].get(); }
306 
307  const amrex::MultiFab*
-
308  get_mac_avg (const int& lev, int comp) { return m_ma.get_average(lev,comp); }
+
308  get_t_star (const int& lev) { return t_star[lev].get(); }
309 
310  const amrex::MultiFab*
-
311  get_t_surf (const int& lev) { return t_surf[lev].get(); }
+
311  get_olen (const int& lev) { return olen[lev].get(); }
312 
-
313  amrex::Real
-
314  get_zref () {return m_ma.get_zref();}
+
313  const amrex::MultiFab*
+
314  get_mac_avg (const int& lev, int comp) { return m_ma.get_average(lev,comp); }
315 
-
316  const amrex::FArrayBox*
-
317  get_z0 (const int& lev) {return &z_0[lev];}
+
316  const amrex::MultiFab*
+
317  get_t_surf (const int& lev) { return t_surf[lev].get(); }
318 
-
319  enum struct FluxCalcType {
-
320  MOENG = 0, ///< Moeng functional form
-
321  DONELAN, ///< Donelan functional form
-
322  CUSTOM ///< Custom constant flux functional form
-
323  };
+
319  amrex::Real
+
320  get_zref () {return m_ma.get_zref();}
+
321 
+
322  const amrex::FArrayBox*
+
323  get_z0 (const int& lev) {return &z_0[lev];}
324 
-
325  enum struct ThetaCalcType {
-
326  ADIABATIC = 0,
-
327  HEAT_FLUX, ///< Heat-flux specified
-
328  SURFACE_TEMPERATURE ///< Surface temperature specified
-
329  };
-
330 
-
331  enum struct RoughCalcType {
-
332  CONSTANT = 0, ///< Constant z0
-
333  CHARNOCK,
-
334  MODIFIED_CHARNOCK,
-
335  WAVE_COUPLED
-
336  };
-
337 
-
338  FluxCalcType flux_type{FluxCalcType::MOENG};
-
339  ThetaCalcType theta_type{ThetaCalcType::ADIABATIC};
-
340  RoughCalcType rough_type_land{RoughCalcType::CONSTANT};
-
341  RoughCalcType rough_type_sea{RoughCalcType::CHARNOCK};
-
342 
-
343 private:
-
344  bool use_moisture;
-
345  bool m_exp_most = false;
-
346  amrex::Real z0_const{0.1};
-
347  amrex::Real surf_temp;
-
348  amrex::Real surf_heating_rate{0};
-
349  amrex::Real surf_temp_flux{0};
-
350  amrex::Real custom_ustar{0};
-
351  amrex::Real custom_tstar{0};
-
352  amrex::Real custom_qstar{0};
-
353  amrex::Real cnk_a{0.0185};
-
354  amrex::Real depth{30.0};
-
355  amrex::Real m_start_bdy_time;
-
356  amrex::Real m_bdy_time_interval;
-
357  amrex::Vector<amrex::Geometry> m_geom;
-
358  amrex::Vector<amrex::FArrayBox> z_0;
-
359 
-
360  MOSTAverage m_ma;
-
361  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
-
362  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
-
363  amrex::Vector<std::unique_ptr<amrex::MultiFab>> q_star;
-
364  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
-
365  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
-
366 
-
367  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_sst_lev;
-
368  amrex::Vector<amrex::Vector<amrex::iMultiFab*>> m_lmask_lev;
-
369  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_data_lev;
-
370  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_flux_lev;
-
371  amrex::Vector<amrex::MultiFab*> m_Hwave_lev;
-
372  amrex::Vector<amrex::MultiFab*> m_Lwave_lev;
-
373  amrex::Vector<amrex::MultiFab*> m_eddyDiffs_lev;
-
374 };
+
325 
+
326 
+
327  enum struct FluxCalcType {
+
328  MOENG = 0, ///< Moeng functional form
+
329  DONELAN, ///< Donelan functional form
+
330  CUSTOM ///< Custom constant flux functional form
+
331  };
+
332 
+
333  enum struct ThetaCalcType {
+
334  ADIABATIC = 0,
+
335  HEAT_FLUX, ///< Heat-flux specified
+
336  SURFACE_TEMPERATURE ///< Surface temperature specified
+
337  };
+
338 
+
339  enum struct RoughCalcType {
+
340  CONSTANT = 0, ///< Constant z0
+
341  CHARNOCK,
+
342  MODIFIED_CHARNOCK,
+
343  WAVE_COUPLED
+
344  };
+
345 
+
346  FluxCalcType flux_type{FluxCalcType::MOENG};
+
347  ThetaCalcType theta_type{ThetaCalcType::ADIABATIC};
+
348  RoughCalcType rough_type_land{RoughCalcType::CONSTANT};
+
349  RoughCalcType rough_type_sea{RoughCalcType::CHARNOCK};
+
350 
+
351 private:
+
352  bool use_moisture;
+
353  bool m_exp_most = false;
+
354  bool m_rotate = false;
+
355  amrex::Real z0_const{0.1};
+
356  amrex::Real surf_temp;
+
357  amrex::Real surf_heating_rate{0};
+
358  amrex::Real surf_temp_flux{0};
+
359  amrex::Real custom_ustar{0};
+
360  amrex::Real custom_tstar{0};
+
361  amrex::Real custom_qstar{0};
+
362  amrex::Real cnk_a{0.0185};
+
363  amrex::Real depth{30.0};
+
364  amrex::Real m_start_bdy_time;
+
365  amrex::Real m_bdy_time_interval;
+
366  amrex::Vector<amrex::Geometry> m_geom;
+
367  amrex::Vector<amrex::FArrayBox> z_0;
+
368 
+
369  MOSTAverage m_ma;
+
370  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
+
371  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
+
372  amrex::Vector<std::unique_ptr<amrex::MultiFab>> q_star;
+
373  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
+
374  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
375 
-
376 #endif /* ABLMOST_H */
+
376  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_sst_lev;
+
377  amrex::Vector<amrex::Vector<amrex::iMultiFab*>> m_lmask_lev;
+
378  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_data_lev;
+
379  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_flux_lev;
+
380  amrex::Vector<amrex::MultiFab*> m_Hwave_lev;
+
381  amrex::Vector<amrex::MultiFab*> m_Lwave_lev;
+
382  amrex::Vector<amrex::MultiFab*> m_eddyDiffs_lev;
+
383 
+
384  //amrex::Array2D<amrex::Real,0,2,0,2> m_rot_mat;
+
385 };
+
386 
+
387 #endif /* ABLMOST_H */
ERF_Constants.H
IndexDefines.H
MOSTAverage.H
MOSTStress.H
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: Microphysics_Utils.H:219
ABLMost
Definition: ABLMost.H:27
-
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ABLMost.H:356
-
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ABLMost.H:373
-
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ABLMost.H:363
-
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(const int &lev)
Definition: ABLMost.H:299
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:364
-
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(const int &lev)
Definition: ABLMost.H:302
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:358
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:357
-
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ABLMost.H:350
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:365
-
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ABLMost.H:352
-
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:354
-
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:348
-
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ABLMost.H:370
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:360
-
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ABLMost.H:325
+
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ABLMost.H:365
+
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ABLMost.H:382
+
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ABLMost.H:372
+
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(const int &lev)
Definition: ABLMost.H:305
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:373
+
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(const int &lev)
Definition: ABLMost.H:308
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:367
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:366
+
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ABLMost.H:359
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:374
+
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ABLMost.H:361
+
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:363
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:357
+
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ABLMost.H:379
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:369
+
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ABLMost.H:333
ABLMost::ThetaCalcType::ADIABATIC
@ ADIABATIC
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
ABLMost::ABLMost
ABLMost(const amrex::Vector< amrex::Geometry > &geom, bool &use_exp_most, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab >>> &sst_lev, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::iMultiFab >>> &lmask_lev, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_data, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_flux, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Hwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Lwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &eddyDiffs, amrex::Real start_bdy_time=0.0, amrex::Real bdy_time_interval=0.0)
Definition: ABLMost.H:32
-
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ABLMost.H:355
-
ABLMost::get_z0
const amrex::FArrayBox * get_z0(const int &lev)
Definition: ABLMost.H:317
-
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ABLMost.H:371
-
ABLMost::compute_most_bcs
void compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
-
ABLMost::update_mac_ptrs
void update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: ABLMost.H:292
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:347
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:353
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:339
+
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ABLMost.H:364
+
ABLMost::get_z0
const amrex::FArrayBox * get_z0(const int &lev)
Definition: ABLMost.H:323
+
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ABLMost.H:380
+
ABLMost::update_mac_ptrs
void update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: ABLMost.H:298
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:356
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:362
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:347
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)
Definition: ABLMost.cpp:135
-
ABLMost::impose_most_bcs
void impose_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys)
Definition: ABLMost.cpp:189
-
ABLMost::FluxCalcType
FluxCalcType
Definition: ABLMost.H:319
+
ABLMost::FluxCalcType
FluxCalcType
Definition: ABLMost.H:327
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::CUSTOM
@ CUSTOM
Custom constant flux functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ABLMost.H:369
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:349
-
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ABLMost.H:368
-
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ABLMost.cpp:384
-
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ABLMost.H:340
-
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ABLMost.H:372
-
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ABLMost.H:341
-
ABLMost::use_moisture
bool use_moisture
Definition: ABLMost.H:344
-
ABLMost::m_exp_most
bool m_exp_most
Definition: ABLMost.H:345
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:362
-
ABLMost::get_t_surf
const amrex::MultiFab * get_t_surf(const int &lev)
Definition: ABLMost.H:311
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:361
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:346
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:338
-
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ABLMost.H:276
-
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ABLMost.H:367
-
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ABLMost.cpp:419
-
ABLMost::get_zref
amrex::Real get_zref()
Definition: ABLMost.H:314
-
ABLMost::RoughCalcType
RoughCalcType
Definition: ABLMost.H:331
+
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ABLMost.H:378
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:358
+
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ABLMost.H:377
+
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ABLMost.cpp:389
+
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ABLMost.H:348
+
ABLMost::m_rotate
bool m_rotate
Definition: ABLMost.H:354
+
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ABLMost.H:381
+
ABLMost::impose_most_bcs
void impose_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys)
Definition: ABLMost.cpp:189
+
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ABLMost.H:349
+
ABLMost::use_moisture
bool use_moisture
Definition: ABLMost.H:352
+
ABLMost::m_exp_most
bool m_exp_most
Definition: ABLMost.H:353
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:371
+
ABLMost::get_t_surf
const amrex::MultiFab * get_t_surf(const int &lev)
Definition: ABLMost.H:317
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:370
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:355
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:346
+
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ABLMost.H:282
+
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ABLMost.H:376
+
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ABLMost.cpp:424
+
ABLMost::get_zref
amrex::Real get_zref()
Definition: ABLMost.H:320
+
ABLMost::RoughCalcType
RoughCalcType
Definition: ABLMost.H:339
ABLMost::RoughCalcType::MODIFIED_CHARNOCK
@ MODIFIED_CHARNOCK
ABLMost::RoughCalcType::WAVE_COUPLED
@ WAVE_COUPLED
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
ABLMost::RoughCalcType::CHARNOCK
@ CHARNOCK
-
ABLMost::get_olen
const amrex::MultiFab * get_olen(const int &lev)
Definition: ABLMost.H:305
-
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(const int &lev, int comp)
Definition: ABLMost.H:308
+
ABLMost::get_olen
const amrex::MultiFab * get_olen(const int &lev)
Definition: ABLMost.H:311
+
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(const int &lev, int comp)
Definition: ABLMost.H:314
ABLMost::update_fluxes
void update_fluxes(const int &lev, const amrex::Real &time, int max_iters=25)
Definition: ABLMost.cpp:13
-
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ABLMost.H:351
+
ABLMost::compute_most_bcs
void compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
+
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ABLMost.H:360
MOSTAverage
Definition: MOSTAverage.H:12
-
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:90
-
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:87
-
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:181
+
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:93
+
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:90
+
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:209
Vars::cons
@ cons
Definition: IndexDefines.H:99
diff --git a/ERF_8H_source.html b/ERF_8H_source.html index cd6996271a..09f148e25a 100644 --- a/ERF_8H_source.html +++ b/ERF_8H_source.html @@ -1077,12 +1077,12 @@
989  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_v_geos;
990 
991  // Function to read and populate above host vectors (if input file exists)
-
992  void init_geo_wind_profile (const std::string input_file,
+
992  void init_geo_wind_profile (const std::string input_file,
993  amrex::Vector<amrex::Real>& u_geos,
994  amrex::Gpu::DeviceVector<amrex::Real>& u_geos_d,
995  amrex::Vector<amrex::Real>& v_geos,
996  amrex::Gpu::DeviceVector<amrex::Real>& v_geos_d,
-
997  const amrex::Geometry& geom,
+
997  const amrex::Geometry& lgeom,
998  const amrex::Vector<amrex::Real>& zlev_stag);
999 
1000  // This is a vector over levels of vectors across quantities of Vectors
@@ -1415,7 +1415,7 @@
ERF::ErrorEst
void ErrorEst(int lev, amrex::TagBoxArray &tags, amrex::Real time, int ngrow) override
Definition: ERF_Tagging.cpp:15
ERF::plot_file_2
std::string plot_file_2
Definition: ERF.H:836
ERF::m_bc_extdir_vals
amrex::Array< amrex::Array< amrex::Real, AMREX_SPACEDIM *2 >, AMREX_SPACEDIM+NVAR_max > m_bc_extdir_vals
Definition: ERF.H:784
-
ERF::FillBdyCCVels
void FillBdyCCVels(amrex::Vector< amrex::MultiFab > &mf_cc_vel)
Definition: ERF_FillPatch.cpp:578
+
ERF::FillBdyCCVels
void FillBdyCCVels(amrex::Vector< amrex::MultiFab > &mf_cc_vel)
Definition: ERF_FillPatch.cpp:579
ERF::SFS_hfx3_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_hfx3_lev
Definition: ERF.H:728
ERF::h_w_subsid
amrex::Vector< amrex::Vector< amrex::Real > > h_w_subsid
Definition: ERF.H:982
ERF::print_banner
static void print_banner(MPI_Comm, std::ostream &)
Definition: console_io.cpp:60
@@ -1605,7 +1605,7 @@
ERF::turbPert_update
void turbPert_update(const int lev, const amrex::Real dt)
Definition: ERF_init_TurbPert.cpp:15
ERF::refinement_criteria_setup
void refinement_criteria_setup()
Definition: ERF_Tagging.cpp:107
ERF::bndry_output_planes_interval
static int bndry_output_planes_interval
Definition: ERF.H:965
-
ERF::init_geo_wind_profile
void init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &geom, const amrex::Vector< amrex::Real > &zlev_stag)
Definition: ERF_init1d.cpp:409
+
ERF::init_geo_wind_profile
void init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &lgeom, const amrex::Vector< amrex::Real > &zlev_stag)
Definition: ERF_init1d.cpp:409
ERF::RemakeLevel
void RemakeLevel(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:368
ERF::GotoNextLine
static void GotoNextLine(std::istream &is)
Definition: Checkpoint.cpp:13
ERF::MakeNewLevelFromScratch
void MakeNewLevelFromScratch(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:27
@@ -1622,7 +1622,7 @@
ERF::turbPert
TurbulentPerturbation turbPert
Definition: ERF.H:890
ERF::rW_old
amrex::Vector< amrex::MultiFab > rW_old
Definition: ERF.H:679
ERF::advance_lsm
void advance_lsm(int lev, amrex::MultiFab &, const amrex::Real &dt_advance)
Definition: ERF_advance_lsm.cpp:5
-
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time)
Definition: ERF_FillPatch.cpp:460
+
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time)
Definition: ERF_FillPatch.cpp:461
ERF::ClearLevel
void ClearLevel(int lev) override
Definition: ERF_make_new_level.cpp:488
ERF::ref_tags
static amrex::Vector< amrex::AMRErrorTag > ref_tags
Definition: ERF.H:1033
ERF::d_w_subsid
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_w_subsid
Definition: ERF.H:983
diff --git a/Interpolation__1D_8H.html b/Interpolation__1D_8H.html index 232f3f56a6..d842ce8502 100644 --- a/Interpolation__1D_8H.html +++ b/Interpolation__1D_8H.html @@ -261,7 +261,7 @@

70 } -

Referenced by init_bx_scalars_from_input_sounding(), init_bx_scalars_from_input_sounding_hse(), init_bx_velocities_from_input_sounding(), ERF::init_Dirichlet_bc_data(), ERF::init_geo_wind_profile(), InputSoundingData::read_from_file(), InputSpongeData::read_from_file(), ERF::setRayleighRefFromSounding(), ERF::setSpongeRefFromSounding(), EWP::source_terms_cellcentered(), and Fitch::source_terms_cellcentered().

+

Referenced by init_bx_scalars_from_input_sounding(), init_bx_scalars_from_input_sounding_hse(), init_bx_velocities_from_input_sounding(), ERF::init_Dirichlet_bc_data(), ERF::init_geo_wind_profile(), InputSoundingData::read_from_file(), InputSpongeData::read_from_file(), ERF::setRayleighRefFromSounding(), ERF::setSpongeRefFromSounding(), EWP::source_terms_cellcentered(), and Fitch::source_terms_cellcentered().

Here is the caller graph for this function:
@@ -272,7 +272,7 @@

- + diff --git a/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.map b/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.map index 417123832b..aa6a6413cf 100644 --- a/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.map +++ b/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.map @@ -4,7 +4,7 @@ - + diff --git a/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.md5 b/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.md5 index fcf567e51c..ca525f3fd0 100644 --- a/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.md5 +++ b/Interpolation__1D_8H_a803d0d35d4ca4791556cbe02bbf51cbb_icgraph.md5 @@ -1 +1 @@ -246f64441d33164d66f46d9051f902b6 \ No newline at end of file +4e323dff84afe7bbfae229d6db32e016 \ No newline at end of file diff --git a/MOSTAverage_8H_source.html b/MOSTAverage_8H_source.html index d72871d055..8c41f59869 100644 --- a/MOSTAverage_8H_source.html +++ b/MOSTAverage_8H_source.html @@ -118,7 +118,7 @@
30 
31  // Delete the copy constructor
32  MOSTAverage (const MOSTAverage& other) = delete;
-
33  //
+
33 
34  // Delete the copy assignment operator
35  MOSTAverage& operator=(const MOSTAverage& other) = delete;
36 
@@ -128,223 +128,231 @@
40  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim,
41  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qv_prim);
42 
-
43  // Compute ncells per plane
-
44  void set_plane_normalization ();
+
43  // Update the rotated fields
+
44  void set_rotated_fields (int lev);
45 
46  // Compute ncells per plane
-
47  void set_region_normalization ()
-
48  {m_ncell_region = (2 * m_radius + 1) * (2 * m_radius + 1) * (2 * m_radius + 1);}
-
49 
-
50  // Populate a 2D iMF k_indx (w/o terrain)
-
51  void set_k_indices_N ();
+
47  void set_plane_normalization ();
+
48 
+
49  // Compute ncells per plane
+
50  void set_region_normalization ()
+
51  {m_ncell_region = (2 * m_radius + 1) * (2 * m_radius + 1) * (2 * m_radius + 1);}
52 
-
53  // Populate a 2D iMF k_indx (w/ terrain)
-
54  void set_k_indices_T ();
+
53  // Populate a 2D iMF k_indx (w/o terrain)
+
54  void set_k_indices_N ();
55 
-
56  // Populate all 2D iMFs ijk_indx (w/ terrain)
-
57  void set_norm_indices_T ();
+
56  // Populate a 2D iMF k_indx (w/ terrain)
+
57  void set_k_indices_T ();
58 
-
59  // Populate positions (w/ terrain & norm vector & interpolation)
-
60  void set_z_positions_T ();
+
59  // Populate all 2D iMFs ijk_indx (w/ terrain)
+
60  void set_norm_indices_T ();
61 
62  // Populate positions (w/ terrain & norm vector & interpolation)
-
63  void set_norm_positions_T ();
+
63  void set_z_positions_T ();
64 
-
65  // Driver for the different average policies
-
66  void compute_averages (int lev);
+
65  // Populate positions (w/ terrain & norm vector & interpolation)
+
66  void set_norm_positions_T ();
67 
-
68  // Fill averages for policy::plane
-
69  void compute_plane_averages (int lev);
+
68  // Driver for the different average policies
+
69  void compute_averages (int lev);
70 
-
71  // Fill averages for policy::point
-
72  void compute_region_averages (int lev);
+
71  // Fill averages for policy::plane
+
72  void compute_plane_averages (int lev);
73 
-
74  // Write k indices
-
75  void write_k_indices (int lev);
+
74  // Fill averages for policy::point
+
75  void compute_region_averages (int lev);
76 
-
77  // Write ijk indices
-
78  void write_norm_indices (int lev);
+
77  // Write k indices
+
78  void write_k_indices (int lev);
79 
-
80  // Write XZ planar positions
-
81  void write_xz_positions (int lev, int j);
+
80  // Write ijk indices
+
81  void write_norm_indices (int lev);
82 
-
83  // Write averages on 2D mf
-
84  void write_averages (int lev);
+
83  // Write XZ planar positions
+
84  void write_xz_positions (int lev, int j);
85 
-
86  // Get pointer to the 2D mf of averages
-
87  [[nodiscard]] const amrex::MultiFab* get_average (int lev, int comp) const { return m_averages[lev][comp].get(); }
+
86  // Write averages on 2D mf
+
87  void write_averages (int lev);
88 
-
89  // Get z_ref (may be computed from specified k_indx)
-
90  [[nodiscard]] amrex::Real get_zref () const { return m_zref; }
-
91 
-
92  /**
-
93  * Function to compute trilinear interpolation with terrain.
-
94  *
-
95  * @param[in] xp X-position
-
96  * @param[in] yp Y-position
-
97  * @param[out] interp_vals Values interpolated
-
98  * @param[in] interp_array Array to interpolate on
-
99  * @param[in] z_arr Physical heights
-
100  * @param[in] plo Problem lower bounds
-
101  * @param[in] dxi Inverse cell size array
-
102  * @param[in] interp_comp Number of components to interpolate
-
103  */
-
104  AMREX_GPU_HOST_DEVICE AMREX_INLINE
-
105  static void trilinear_interp_T (const amrex::Real& xp,
-
106  const amrex::Real& yp,
-
107  const amrex::Real& zp,
-
108  amrex::Real* interp_vals,
-
109  amrex::Array4<amrex::Real const> const& interp_array,
-
110  amrex::Array4<amrex::Real const> const& z_arr,
-
111  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& plo,
-
112  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& dxi,
-
113  const int interp_comp)
-
114  {
-
115  // Search to get z/k
-
116  bool found = false;
-
117  amrex::Real zval= 0.0;
-
118  int kmax = ubound(z_arr).z;
-
119  int i_new = (int) (xp * dxi[0] - 0.5);
-
120  int j_new = (int) (yp * dxi[1] - 0.5);
-
121  amrex::Real z_target = zp;
-
122  for (int lk(0); lk<kmax; ++lk) {
-
123  amrex::Real z_lo = 0.25 * ( z_arr(i_new,j_new ,lk ) + z_arr(i_new+1,j_new ,lk )
-
124  + z_arr(i_new,j_new+1,lk ) + z_arr(i_new+1,j_new+1,lk ) );
-
125  amrex::Real z_hi = 0.25 * ( z_arr(i_new,j_new ,lk+1) + z_arr(i_new+1,j_new ,lk+1)
-
126  + z_arr(i_new,j_new+1,lk+1) + z_arr(i_new+1,j_new+1,lk+1) );
-
127  if (z_target > z_lo && z_target < z_hi){
-
128  found = true;
-
129  zval = (amrex::Real) lk + ((z_target - z_lo) / (z_hi - z_lo)) + 0.5;
-
130  break;
-
131  }
-
132  }
-
133 
-
134  amrex::ignore_unused(found);
-
135  AMREX_ASSERT_WITH_MESSAGE(found, "MOSTAverage: Height above terrain not found, try increasing z_ref!");
+
89  // Get pointer to the 2D mf of averages
+
90  [[nodiscard]] const amrex::MultiFab* get_average (int lev, int comp) const { return m_averages[lev][comp].get(); }
+
91 
+
92  // Get z_ref (may be computed from specified k_indx)
+
93  [[nodiscard]] amrex::Real get_zref () const { return m_zref; }
+
94 
+
95  /**
+
96  * Function to compute trilinear interpolation with terrain.
+
97  *
+
98  * @param[in] xp X-position
+
99  * @param[in] yp Y-position
+
100  * @param[out] interp_vals Values interpolated
+
101  * @param[in] interp_array Array to interpolate on
+
102  * @param[in] z_arr Physical heights
+
103  * @param[in] plo Problem lower bounds
+
104  * @param[in] dxi Inverse cell size array
+
105  * @param[in] interp_comp Number of components to interpolate
+
106  */
+
107  AMREX_GPU_HOST_DEVICE AMREX_INLINE
+
108  static void trilinear_interp_T (const amrex::Real& xp,
+
109  const amrex::Real& yp,
+
110  const amrex::Real& zp,
+
111  amrex::Real* interp_vals,
+
112  amrex::Array4<amrex::Real const> const& interp_array,
+
113  amrex::Array4<amrex::Real const> const& z_arr,
+
114  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& plo,
+
115  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& dxi,
+
116  const int interp_comp)
+
117  {
+
118  // Search to get z/k
+
119  bool found = false;
+
120  amrex::Real zval= 0.0;
+
121  int kmax = ubound(z_arr).z;
+
122  int i_new = (int) (xp * dxi[0] - 0.5);
+
123  int j_new = (int) (yp * dxi[1] - 0.5);
+
124  amrex::Real z_target = zp;
+
125  for (int lk(0); lk<kmax; ++lk) {
+
126  amrex::Real z_lo = 0.25 * ( z_arr(i_new,j_new ,lk ) + z_arr(i_new+1,j_new ,lk )
+
127  + z_arr(i_new,j_new+1,lk ) + z_arr(i_new+1,j_new+1,lk ) );
+
128  amrex::Real z_hi = 0.25 * ( z_arr(i_new,j_new ,lk+1) + z_arr(i_new+1,j_new ,lk+1)
+
129  + z_arr(i_new,j_new+1,lk+1) + z_arr(i_new+1,j_new+1,lk+1) );
+
130  if (z_target > z_lo && z_target < z_hi){
+
131  found = true;
+
132  zval = (amrex::Real) lk + ((z_target - z_lo) / (z_hi - z_lo)) + 0.5;
+
133  break;
+
134  }
+
135  }
136 
-
137  const amrex::RealVect lx((xp - plo[0])*dxi[0] + 0.5,
-
138  (yp - plo[1])*dxi[1] + 0.5,
-
139  zval);
-
140 
-
141  const amrex::IntVect ijk = lx.floor();
-
142 
-
143  int i = ijk[0]; int j = ijk[1]; int k = ijk[2];
-
144 
-
145  // Weights
-
146  const amrex::RealVect sx_hi = lx - ijk;
-
147  const amrex::RealVect sx_lo = 1.0 - sx_hi;
-
148 
-
149  for (int n = 0; n < interp_comp; n++)
-
150  interp_vals[n] = sx_lo[0]*sx_lo[1]*sx_lo[2]*interp_array(i-1, j-1, k-1,n) +
-
151  sx_lo[0]*sx_lo[1]*sx_hi[2]*interp_array(i-1, j-1, k ,n) +
-
152  sx_lo[0]*sx_hi[1]*sx_lo[2]*interp_array(i-1, j , k-1,n) +
-
153  sx_lo[0]*sx_hi[1]*sx_hi[2]*interp_array(i-1, j , k ,n) +
-
154  sx_hi[0]*sx_lo[1]*sx_lo[2]*interp_array(i , j-1, k-1,n) +
-
155  sx_hi[0]*sx_lo[1]*sx_hi[2]*interp_array(i , j-1, k ,n) +
-
156  sx_hi[0]*sx_hi[1]*sx_lo[2]*interp_array(i , j , k-1,n) +
-
157  sx_hi[0]*sx_hi[1]*sx_hi[2]*interp_array(i , j , k ,n);
-
158  }
-
159 
-
160 protected:
-
161 
-
162  // Passed through constructor
-
163  //--------------------------------------------
-
164  const amrex::Vector<amrex::Geometry> m_geom; // Geometry at each level
-
165  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_fields; // Ptr to fields to be averaged
-
166  amrex::Vector<amrex::MultiFab*> m_z_phys_nd; // Ptr to terrain height coords
-
167 
-
168  // General vars for multiple or all policies
-
169  //--------------------------------------------
-
170  int m_nvar{4}; // 4 fields for U/V/T/Qv
-
171  int m_navg{5}; // 5 averages for U/V/T/Qv/Umag
-
172  int m_maxlev{0}; // Total number of levels
-
173  int m_policy{0}; // Policy for type of averaging
-
174  amrex::Real m_zref{10.0}; // Height above surface for MOST BC
-
175  std::string m_pp_prefix {"erf"}; // ParmParse prefix
-
176  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_x_pos; // Ptr to 2D mf to hold x position (maxlev)
-
177  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_y_pos; // Ptr to 2D mf to hold y position (maxlev)
-
178  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_z_pos; // Ptr to 2D mf to hold z position (maxlev)
-
179  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_i_indx; // Ptr to 2D imf to hold i indices (maxlev)
-
180  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_j_indx; // Ptr to 2D imf to hold j indices (maxlev)
-
181  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_k_indx; // Ptr to 2D imf to hold k indices (maxlev)
-
182  amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab>>> m_averages; // Ptr to 2D mf to hold averages (maxlev,navg)
-
183 
-
184  // Vars for planar average policy
-
185  //--------------------------------------------
-
186  amrex::Vector<amrex::Vector<int>> m_ncell_plane; // Number of cells in plane (maxlev,navg)
-
187  amrex::Vector<amrex::Vector<amrex::Real>> m_plane_average; // Plane avgs (maxlev,navg)
+
137  amrex::ignore_unused(found);
+
138  AMREX_ASSERT_WITH_MESSAGE(found, "MOSTAverage: Height above terrain not found, try increasing z_ref!");
+
139 
+
140  const amrex::RealVect lx((xp - plo[0])*dxi[0] + 0.5,
+
141  (yp - plo[1])*dxi[1] + 0.5,
+
142  zval);
+
143 
+
144  const amrex::IntVect ijk = lx.floor();
+
145 
+
146  int i = ijk[0]; int j = ijk[1]; int k = ijk[2];
+
147 
+
148  // Weights
+
149  const amrex::RealVect sx_hi = lx - ijk;
+
150  const amrex::RealVect sx_lo = 1.0 - sx_hi;
+
151 
+
152  for (int n = 0; n < interp_comp; n++)
+
153  interp_vals[n] = sx_lo[0]*sx_lo[1]*sx_lo[2]*interp_array(i-1, j-1, k-1,n) +
+
154  sx_lo[0]*sx_lo[1]*sx_hi[2]*interp_array(i-1, j-1, k ,n) +
+
155  sx_lo[0]*sx_hi[1]*sx_lo[2]*interp_array(i-1, j , k-1,n) +
+
156  sx_lo[0]*sx_hi[1]*sx_hi[2]*interp_array(i-1, j , k ,n) +
+
157  sx_hi[0]*sx_lo[1]*sx_lo[2]*interp_array(i , j-1, k-1,n) +
+
158  sx_hi[0]*sx_lo[1]*sx_hi[2]*interp_array(i , j-1, k ,n) +
+
159  sx_hi[0]*sx_hi[1]*sx_lo[2]*interp_array(i , j , k-1,n) +
+
160  sx_hi[0]*sx_hi[1]*sx_hi[2]*interp_array(i , j , k ,n);
+
161  }
+
162 
+
163 protected:
+
164 
+
165  // Passed through constructor
+
166  //--------------------------------------------
+
167  const amrex::Vector<amrex::Geometry> m_geom; // Geometry at each level
+
168  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_fields; // Ptr to fields to be averaged
+
169  amrex::Vector<amrex::MultiFab*> m_z_phys_nd; // Ptr to terrain height coords
+
170 
+
171  // General vars for multiple or all policies
+
172  //--------------------------------------------
+
173  int m_nvar{5}; // 5 fields for U/V/T/Qv/W
+
174  int m_navg{5}; // 5 averages for U/V/T/Qv/Umag
+
175  int m_maxlev{0}; // Total number of levels
+
176  int m_policy{0}; // Policy for type of averaging
+
177  bool m_rotate{false}; // Do vector rotations for terrain?
+
178  amrex::Real m_zref{10.0}; // Height above surface for MOST BC
+
179  std::string m_pp_prefix {"erf"}; // ParmParse prefix
+
180  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_x_pos; // Ptr to 2D mf to hold x position (maxlev)
+
181  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_y_pos; // Ptr to 2D mf to hold y position (maxlev)
+
182  amrex::Vector<std::unique_ptr<amrex::MultiFab>> m_z_pos; // Ptr to 2D mf to hold z position (maxlev)
+
183  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_i_indx; // Ptr to 2D imf to hold i indices (maxlev)
+
184  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_j_indx; // Ptr to 2D imf to hold j indices (maxlev)
+
185  amrex::Vector<std::unique_ptr<amrex::iMultiFab>> m_k_indx; // Ptr to 2D imf to hold k indices (maxlev)
+
186  amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab>>> m_averages; // Ptr to 2D mf to hold averages (maxlev,navg)
+
187  amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab>>> m_rot_fields; // Rotated field data
188 
-
189  // Vars for point/region average policy
+
189  // Vars for planar average policy
190  //--------------------------------------------
-
191  int m_radius{0}; // Radius around k_index
-
192  int m_ncell_region{1}; // Number of cells in local region
-
193  amrex::Vector<int> m_k_in; // Specified k_index for region avg (maxlev)
-
194 
-
195  // Vars for normal vector policy
-
196  //--------------------------------------------
-
197  bool m_interp{false}; // Do interpolation on destination?
-
198  bool m_norm_vec{false}; // Use normal vector to find IJK?
+
191  amrex::Vector<amrex::Vector<int>> m_ncell_plane; // Number of cells in plane (maxlev,navg)
+
192  amrex::Vector<amrex::Vector<amrex::Real>> m_plane_average; // Plane avgs (maxlev,navg)
+
193 
+
194  // Vars for point/region average policy
+
195  //--------------------------------------------
+
196  int m_radius{0}; // Radius around k_index
+
197  int m_ncell_region{1}; // Number of cells in local region
+
198  amrex::Vector<int> m_k_in; // Specified k_index for region avg (maxlev)
199 
-
200  // Time average w/ exponential filter fun
+
200  // Vars for normal vector policy
201  //--------------------------------------------
-
202  bool m_t_avg{false}; // Flag to do moving average in time
-
203  amrex::Vector<int> m_t_init; // Flag to specify if averages are initialized
-
204  amrex::Real m_time_window{1.0e-16}; // Width of the exp filter function
-
205  amrex::Real m_fact_new, m_fact_old; // Time average factors for new and old means
-
206 };
-
207 #endif
+
202  bool m_interp{false}; // Do interpolation on destination?
+
203  bool m_norm_vec{false}; // Use normal vector to find IJK?
+
204 
+
205  // Time average w/ exponential filter fun
+
206  //--------------------------------------------
+
207  bool m_t_avg{false}; // Flag to do moving average in time
+
208  amrex::Vector<int> m_t_init; // Flag to specify if averages are initialized
+
209  amrex::Real m_time_window{1.0e-16}; // Width of the exp filter function
+
210  amrex::Real m_fact_new, m_fact_old; // Time average factors for new and old means
+
211 };
+
212 #endif
MOSTAverage
Definition: MOSTAverage.H:12
-
MOSTAverage::m_navg
int m_navg
Definition: MOSTAverage.H:171
-
MOSTAverage::m_t_avg
bool m_t_avg
Definition: MOSTAverage.H:202
-
MOSTAverage::m_policy
int m_policy
Definition: MOSTAverage.H:173
-
MOSTAverage::m_averages
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_averages
Definition: MOSTAverage.H:182
-
MOSTAverage::set_k_indices_T
void set_k_indices_T()
Definition: MOSTAverage.cpp:302
-
MOSTAverage::m_y_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_y_pos
Definition: MOSTAverage.H:177
-
MOSTAverage::set_region_normalization
void set_region_normalization()
Definition: MOSTAverage.H:47
-
MOSTAverage::write_xz_positions
void write_xz_positions(int lev, int j)
Definition: MOSTAverage.cpp:1066
-
MOSTAverage::set_norm_indices_T
void set_norm_indices_T()
Definition: MOSTAverage.cpp:359
-
MOSTAverage::m_radius
int m_radius
Definition: MOSTAverage.H:191
-
MOSTAverage::m_i_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_i_indx
Definition: MOSTAverage.H:179
-
MOSTAverage::m_z_phys_nd
amrex::Vector< amrex::MultiFab * > m_z_phys_nd
Definition: MOSTAverage.H:166
-
MOSTAverage::m_t_init
amrex::Vector< int > m_t_init
Definition: MOSTAverage.H:203
-
MOSTAverage::m_x_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_x_pos
Definition: MOSTAverage.H:176
-
MOSTAverage::set_plane_normalization
void set_plane_normalization()
Definition: MOSTAverage.cpp:198
-
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:90
-
MOSTAverage::write_k_indices
void write_k_indices(int lev)
Definition: MOSTAverage.cpp:978
+
MOSTAverage::m_navg
int m_navg
Definition: MOSTAverage.H:174
+
MOSTAverage::m_t_avg
bool m_t_avg
Definition: MOSTAverage.H:207
+
MOSTAverage::m_policy
int m_policy
Definition: MOSTAverage.H:176
+
MOSTAverage::m_averages
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_averages
Definition: MOSTAverage.H:186
+
MOSTAverage::set_k_indices_T
void set_k_indices_T()
Definition: MOSTAverage.cpp:390
+
MOSTAverage::m_y_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_y_pos
Definition: MOSTAverage.H:181
+
MOSTAverage::set_region_normalization
void set_region_normalization()
Definition: MOSTAverage.H:50
+
MOSTAverage::write_xz_positions
void write_xz_positions(int lev, int j)
Definition: MOSTAverage.cpp:1164
+
MOSTAverage::set_norm_indices_T
void set_norm_indices_T()
Definition: MOSTAverage.cpp:447
+
MOSTAverage::m_radius
int m_radius
Definition: MOSTAverage.H:196
+
MOSTAverage::m_i_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_i_indx
Definition: MOSTAverage.H:183
+
MOSTAverage::set_rotated_fields
void set_rotated_fields(int lev)
Definition: MOSTAverage.cpp:227
+
MOSTAverage::m_z_phys_nd
amrex::Vector< amrex::MultiFab * > m_z_phys_nd
Definition: MOSTAverage.H:169
+
MOSTAverage::m_t_init
amrex::Vector< int > m_t_init
Definition: MOSTAverage.H:208
+
MOSTAverage::m_x_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_x_pos
Definition: MOSTAverage.H:180
+
MOSTAverage::set_plane_normalization
void set_plane_normalization()
Definition: MOSTAverage.cpp:286
+
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:93
+
MOSTAverage::write_k_indices
void write_k_indices(int lev)
Definition: MOSTAverage.cpp:1076
MOSTAverage::MOSTAverage
MOSTAverage(amrex::Vector< amrex::Geometry > geom, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd)
-
MOSTAverage::set_norm_positions_T
void set_norm_positions_T()
Definition: MOSTAverage.cpp:478
-
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: MOSTAverage.cpp:540
-
MOSTAverage::m_plane_average
amrex::Vector< amrex::Vector< amrex::Real > > m_plane_average
Definition: MOSTAverage.H:187
-
MOSTAverage::m_z_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_z_pos
Definition: MOSTAverage.H:178
-
MOSTAverage::set_k_indices_N
void set_k_indices_N()
Definition: MOSTAverage.cpp:243
-
MOSTAverage::m_ncell_plane
amrex::Vector< amrex::Vector< int > > m_ncell_plane
Definition: MOSTAverage.H:186
-
MOSTAverage::m_pp_prefix
std::string m_pp_prefix
Definition: MOSTAverage.H:175
-
MOSTAverage::m_norm_vec
bool m_norm_vec
Definition: MOSTAverage.H:198
-
MOSTAverage::m_nvar
int m_nvar
Definition: MOSTAverage.H:170
-
MOSTAverage::m_fact_new
amrex::Real m_fact_new
Definition: MOSTAverage.H:205
-
MOSTAverage::set_z_positions_T
void set_z_positions_T()
Definition: MOSTAverage.cpp:432
-
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:87
-
MOSTAverage::compute_region_averages
void compute_region_averages(int lev)
Definition: MOSTAverage.cpp:754
-
MOSTAverage::m_ncell_region
int m_ncell_region
Definition: MOSTAverage.H:192
-
MOSTAverage::compute_plane_averages
void compute_plane_averages(int lev)
Definition: MOSTAverage.cpp:564
-
MOSTAverage::write_norm_indices
void write_norm_indices(int lev)
Definition: MOSTAverage.cpp:1017
-
MOSTAverage::m_maxlev
int m_maxlev
Definition: MOSTAverage.H:172
-
MOSTAverage::write_averages
void write_averages(int lev)
Definition: MOSTAverage.cpp:1096
+
MOSTAverage::set_norm_positions_T
void set_norm_positions_T()
Definition: MOSTAverage.cpp:566
+
MOSTAverage::m_rot_fields
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_rot_fields
Definition: MOSTAverage.H:187
+
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: MOSTAverage.cpp:628
+
MOSTAverage::m_rotate
bool m_rotate
Definition: MOSTAverage.H:177
+
MOSTAverage::m_plane_average
amrex::Vector< amrex::Vector< amrex::Real > > m_plane_average
Definition: MOSTAverage.H:192
+
MOSTAverage::m_z_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_z_pos
Definition: MOSTAverage.H:182
+
MOSTAverage::set_k_indices_N
void set_k_indices_N()
Definition: MOSTAverage.cpp:331
+
MOSTAverage::m_ncell_plane
amrex::Vector< amrex::Vector< int > > m_ncell_plane
Definition: MOSTAverage.H:191
+
MOSTAverage::m_pp_prefix
std::string m_pp_prefix
Definition: MOSTAverage.H:179
+
MOSTAverage::m_norm_vec
bool m_norm_vec
Definition: MOSTAverage.H:203
+
MOSTAverage::m_nvar
int m_nvar
Definition: MOSTAverage.H:173
+
MOSTAverage::m_fact_new
amrex::Real m_fact_new
Definition: MOSTAverage.H:210
+
MOSTAverage::set_z_positions_T
void set_z_positions_T()
Definition: MOSTAverage.cpp:520
+
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:90
+
MOSTAverage::compute_region_averages
void compute_region_averages(int lev)
Definition: MOSTAverage.cpp:848
+
MOSTAverage::m_ncell_region
int m_ncell_region
Definition: MOSTAverage.H:197
+
MOSTAverage::compute_plane_averages
void compute_plane_averages(int lev)
Definition: MOSTAverage.cpp:654
+
MOSTAverage::write_norm_indices
void write_norm_indices(int lev)
Definition: MOSTAverage.cpp:1115
+
MOSTAverage::m_maxlev
int m_maxlev
Definition: MOSTAverage.H:175
+
MOSTAverage::write_averages
void write_averages(int lev)
Definition: MOSTAverage.cpp:1194
MOSTAverage::~MOSTAverage
~MOSTAverage()
Definition: MOSTAverage.H:21
-
MOSTAverage::m_time_window
amrex::Real m_time_window
Definition: MOSTAverage.H:204
-
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:181
-
MOSTAverage::m_j_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_j_indx
Definition: MOSTAverage.H:180
+
MOSTAverage::m_time_window
amrex::Real m_time_window
Definition: MOSTAverage.H:209
+
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:209
+
MOSTAverage::m_j_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_j_indx
Definition: MOSTAverage.H:184
MOSTAverage::MOSTAverage
MOSTAverage(MOSTAverage &&) noexcept=default
-
MOSTAverage::m_fields
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_fields
Definition: MOSTAverage.H:165
-
MOSTAverage::m_k_in
amrex::Vector< int > m_k_in
Definition: MOSTAverage.H:193
-
MOSTAverage::m_fact_old
amrex::Real m_fact_old
Definition: MOSTAverage.H:205
-
MOSTAverage::m_interp
bool m_interp
Definition: MOSTAverage.H:197
-
MOSTAverage::m_geom
const amrex::Vector< amrex::Geometry > m_geom
Definition: MOSTAverage.H:164
-
MOSTAverage::trilinear_interp_T
AMREX_GPU_HOST_DEVICE static AMREX_INLINE void trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)
Definition: MOSTAverage.H:105
-
MOSTAverage::m_zref
amrex::Real m_zref
Definition: MOSTAverage.H:174
-
MOSTAverage::m_k_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_k_indx
Definition: MOSTAverage.H:181
+
MOSTAverage::m_fields
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_fields
Definition: MOSTAverage.H:168
+
MOSTAverage::m_k_in
amrex::Vector< int > m_k_in
Definition: MOSTAverage.H:198
+
MOSTAverage::m_fact_old
amrex::Real m_fact_old
Definition: MOSTAverage.H:210
+
MOSTAverage::m_interp
bool m_interp
Definition: MOSTAverage.H:202
+
MOSTAverage::m_geom
const amrex::Vector< amrex::Geometry > m_geom
Definition: MOSTAverage.H:167
+
MOSTAverage::trilinear_interp_T
AMREX_GPU_HOST_DEVICE static AMREX_INLINE void trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)
Definition: MOSTAverage.H:108
+
MOSTAverage::m_zref
amrex::Real m_zref
Definition: MOSTAverage.H:178
+
MOSTAverage::m_k_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_k_indx
Definition: MOSTAverage.H:185
amrex
Definition: console_io.cpp:12

diff --git a/MOSTStress_8H_source.html b/MOSTStress_8H_source.html index 1a707baf4e..97a68f6a4d 100644 --- a/MOSTStress_8H_source.html +++ b/MOSTStress_8H_source.html @@ -919,13 +919,13 @@
831  AMREX_GPU_DEVICE
832  AMREX_FORCE_INLINE
833  amrex::Real
-
834  compute_q_flux (const int& i,
+
834  compute_q_flux (const int& i,
835  const int& j,
836  const int& k,
837  const int& n,
838  const int& icomp,
839  const amrex::Real& dz,
-
840  const amrex::Real& /*dz1*/,
+
840  const amrex::Real& dz1,
841  const bool& exp_most,
842  const amrex::Array4<const amrex::Real>& eta_arr,
843  const amrex::Array4<const amrex::Real>& cons_arr,
@@ -953,767 +953,782 @@
865  amrex::Real moflux = 0.0;
866  amrex::Real deltaz = dz * (zlo - k);
867 
-
868  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for Moeng moisture flux");
-
869 
-
870  int ie, je;
-
871  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
872  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
873  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
874  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
875  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
-
876  eta = amrex::max(eta,eta_eps);
-
877  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
-
878 
-
879  return moflux;
-
880  }
-
881 
-
882  AMREX_GPU_DEVICE
-
883  AMREX_FORCE_INLINE
-
884  amrex::Real
-
885  compute_t_flux (const int& i,
-
886  const int& j,
-
887  const int& k,
-
888  const int& n,
-
889  const int& icomp,
-
890  const amrex::Real& dz,
-
891  const amrex::Real& dz1,
-
892  const bool& exp_most,
-
893  const amrex::Array4<const amrex::Real>& eta_arr,
-
894  const amrex::Array4<const amrex::Real>& cons_arr,
-
895  const amrex::Array4<const amrex::Real>& velx_arr,
-
896  const amrex::Array4<const amrex::Real>& vely_arr,
-
897  const amrex::Array4<const amrex::Real>& umm_arr,
-
898  const amrex::Array4<const amrex::Real>& tm_arr,
-
899  const amrex::Array4<const amrex::Real>& u_star_arr,
-
900  const amrex::Array4<const amrex::Real>& t_star_arr,
-
901  const amrex::Array4<const amrex::Real>& t_surf_arr,
-
902  const amrex::Array4<amrex::Real>& dest_arr) const
-
903  {
-
904  amrex::Real velx, vely, rho, theta, eta;
-
905  int ix, jx, iy, jy, ic, jc;
-
906 
-
907  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
908  jx = j < lbound(velx_arr).y ? lbound(velx_arr).y : j;
-
909  ix = ix > ubound(velx_arr).x-1 ? ubound(velx_arr).x-1 : ix;
-
910  jx = jx > ubound(velx_arr).y ? ubound(velx_arr).y : jx;
+
868  if (exp_most) {
+
869  // surface gradient equal to gradient at first zface
+
870  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
+
871  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
+
872  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
+
873  } else {
+
874  int ie, je;
+
875  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
876  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
877  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
878  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
879  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
+
880  eta = amrex::max(eta,eta_eps);
+
881  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
+
882  }
+
883 
+
884  return moflux;
+
885  }
+
886 
+
887  AMREX_GPU_DEVICE
+
888  AMREX_FORCE_INLINE
+
889  amrex::Real
+
890  compute_t_flux (const int& i,
+
891  const int& j,
+
892  const int& k,
+
893  const int& n,
+
894  const int& icomp,
+
895  const amrex::Real& dz,
+
896  const amrex::Real& dz1,
+
897  const bool& exp_most,
+
898  const amrex::Array4<const amrex::Real>& eta_arr,
+
899  const amrex::Array4<const amrex::Real>& cons_arr,
+
900  const amrex::Array4<const amrex::Real>& velx_arr,
+
901  const amrex::Array4<const amrex::Real>& vely_arr,
+
902  const amrex::Array4<const amrex::Real>& umm_arr,
+
903  const amrex::Array4<const amrex::Real>& tm_arr,
+
904  const amrex::Array4<const amrex::Real>& u_star_arr,
+
905  const amrex::Array4<const amrex::Real>& t_star_arr,
+
906  const amrex::Array4<const amrex::Real>& t_surf_arr,
+
907  const amrex::Array4<amrex::Real>& dest_arr) const
+
908  {
+
909  amrex::Real velx, vely, rho, theta, eta;
+
910  int ix, jx, iy, jy, ic, jc;
911 
-
912  iy = i < lbound(vely_arr).x ? lbound(vely_arr).x : i;
-
913  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
914  iy = iy > ubound(vely_arr).x ? ubound(vely_arr).x : iy;
-
915  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
+
912  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
913  jx = j < lbound(velx_arr).y ? lbound(velx_arr).y : j;
+
914  ix = ix > ubound(velx_arr).x-1 ? ubound(velx_arr).x-1 : ix;
+
915  jx = jx > ubound(velx_arr).y ? ubound(velx_arr).y : jx;
916 
-
917  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
918  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
919  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
920  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
917  iy = i < lbound(vely_arr).x ? lbound(vely_arr).x : i;
+
918  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
919  iy = iy > ubound(vely_arr).x ? ubound(vely_arr).x : iy;
+
920  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
921 
-
922  velx = 0.5 *( velx_arr(ix,jx,zlo) + velx_arr(ix+1,jx ,zlo) );
-
923  vely = 0.5 *( vely_arr(iy,jy,zlo) + vely_arr(iy ,jy+1,zlo) );
-
924  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
925  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
+
922  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
923  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
924  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
925  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
926 
-
927  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
-
928  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
-
929  amrex::Real ustar = u_star_arr(ic,jc,zlo);
-
930  amrex::Real tstar = t_star_arr(ic,jc,zlo);
-
931  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
-
932 
-
933  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
934  amrex::Real num1 = wsp * (theta_mean-theta_surf);
-
935  amrex::Real num2 = wsp_mean * (theta-theta_mean);
-
936  amrex::Real moflux = (std::abs(tstar) > eps) ?
-
937  -tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
-
938  amrex::Real deltaz = dz * (zlo - k);
-
939 
-
940  if (exp_most) {
-
941  // surface gradient equal to gradient at first zface
-
942  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
-
943  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
-
944  } else {
-
945  int ie, je;
-
946  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
947  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
948  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
949  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
950  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
-
951  eta = amrex::max(eta,eta_eps);
-
952  // Note: Kh = eta/rho
-
953  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
-
954  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
-
955  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
-
956  }
-
957 
-
958  return moflux;
-
959  }
-
960 
-
961  AMREX_GPU_DEVICE
-
962  AMREX_FORCE_INLINE
-
963  amrex::Real
-
964  compute_u_flux (const int& i,
-
965  const int& j,
-
966  const int& k,
-
967  const int& icomp,
-
968  const amrex::Real& dz,
-
969  const amrex::Real& dz1,
-
970  const bool& exp_most,
-
971  const amrex::Array4<const amrex::Real>& eta_arr,
-
972  const amrex::Array4<const amrex::Real>& cons_arr,
-
973  const amrex::Array4<const amrex::Real>& velx_arr,
-
974  const amrex::Array4<const amrex::Real>& vely_arr,
-
975  const amrex::Array4<const amrex::Real>& umm_arr,
-
976  const amrex::Array4<const amrex::Real>& um_arr,
-
977  const amrex::Array4<const amrex::Real>& u_star_arr,
-
978  const amrex::Array4<amrex::Real>& dest_arr) const
-
979  {
-
980  amrex::Real velx, vely, rho, eta;
-
981  int jy, ic, jc;
-
982 
-
983  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
-
984  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
-
985 
-
986  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
987  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
-
988 
-
989  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
-
990  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
991  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
992  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
927  velx = 0.5 *( velx_arr(ix,jx,zlo) + velx_arr(ix+1,jx ,zlo) );
+
928  vely = 0.5 *( vely_arr(iy,jy,zlo) + vely_arr(iy ,jy+1,zlo) );
+
929  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
930  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
+
931 
+
932  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
+
933  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
+
934  amrex::Real ustar = u_star_arr(ic,jc,zlo);
+
935  amrex::Real tstar = t_star_arr(ic,jc,zlo);
+
936  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
+
937 
+
938  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
939  amrex::Real num1 = wsp * (theta_mean-theta_surf);
+
940  amrex::Real num2 = wsp_mean * (theta-theta_mean);
+
941  amrex::Real moflux = (std::abs(tstar) > eps) ?
+
942  -tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
+
943  amrex::Real deltaz = dz * (zlo - k);
+
944 
+
945  if (exp_most) {
+
946  // surface gradient equal to gradient at first zface
+
947  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
+
948  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
+
949  } else {
+
950  int ie, je;
+
951  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
952  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
953  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
954  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
955  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
+
956  eta = amrex::max(eta,eta_eps);
+
957  // Note: Kh = eta/rho
+
958  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
+
959  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
+
960  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
+
961  }
+
962 
+
963  return moflux;
+
964  }
+
965 
+
966  AMREX_GPU_DEVICE
+
967  AMREX_FORCE_INLINE
+
968  amrex::Real
+
969  compute_u_flux (const int& i,
+
970  const int& j,
+
971  const int& k,
+
972  const int& icomp,
+
973  const amrex::Real& dz,
+
974  const amrex::Real& dz1,
+
975  const bool& exp_most,
+
976  const amrex::Array4<const amrex::Real>& eta_arr,
+
977  const amrex::Array4<const amrex::Real>& cons_arr,
+
978  const amrex::Array4<const amrex::Real>& velx_arr,
+
979  const amrex::Array4<const amrex::Real>& vely_arr,
+
980  const amrex::Array4<const amrex::Real>& umm_arr,
+
981  const amrex::Array4<const amrex::Real>& um_arr,
+
982  const amrex::Array4<const amrex::Real>& u_star_arr,
+
983  const amrex::Array4<amrex::Real>& dest_arr) const
+
984  {
+
985  amrex::Real velx, vely, rho, eta;
+
986  int jy, ic, jc;
+
987 
+
988  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
+
989  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
+
990 
+
991  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
992  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
993 
-
994  velx = velx_arr(i,j,zlo);
-
995  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
-
996  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
-
997  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
-
998  + cons_arr(ic ,jc,zlo,Rho_comp) );
-
999 
-
1000  amrex::Real umean = um_arr(i,j,zlo);
-
1001  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
-
1002  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
-
1003 
-
1004  // Note: The surface mean shear stress is decomposed into tau_xz by
-
1005  // multiplying the modeled shear stress (rho*ustar^2) with
-
1006  // a factor of umean/wsp_mean for directionality; this factor
-
1007  // modifies the denominator from what is in Moeng 1984.
-
1008  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1009  amrex::Real num1 = wsp * umean;
-
1010  amrex::Real num2 = wsp_mean * (velx-umean);
-
1011  amrex::Real stressx = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
-
1012  amrex::Real deltaz = dz * (zlo - k);
-
1013 
-
1014  if (exp_most) {
-
1015  // surface gradient equal to gradient at first zface
-
1016  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
-
1017  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
-
1018  } else {
-
1019  int ie, je;
-
1020  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
-
1021  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1022  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1023  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1024  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
-
1025  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
-
1026  eta = amrex::max(eta,eta_eps);
-
1027  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
-
1028  }
-
1029 
-
1030  return stressx;
-
1031  }
-
1032 
-
1033  AMREX_GPU_DEVICE
-
1034  AMREX_FORCE_INLINE
-
1035  amrex::Real
-
1036  compute_v_flux (const int& i,
-
1037  const int& j,
-
1038  const int& k,
-
1039  const int& icomp,
-
1040  const amrex::Real& dz,
-
1041  const amrex::Real& dz1,
-
1042  const bool& exp_most,
-
1043  const amrex::Array4<const amrex::Real>& eta_arr,
-
1044  const amrex::Array4<const amrex::Real>& cons_arr,
-
1045  const amrex::Array4<const amrex::Real>& velx_arr,
-
1046  const amrex::Array4<const amrex::Real>& vely_arr,
-
1047  const amrex::Array4<const amrex::Real>& umm_arr,
-
1048  const amrex::Array4<const amrex::Real>& vm_arr,
-
1049  const amrex::Array4<const amrex::Real>& u_star_arr,
-
1050  const amrex::Array4<amrex::Real>& dest_arr) const
-
1051  {
-
1052  amrex::Real velx, vely, rho, eta;
-
1053  int ix, ic, jc;
-
1054 
-
1055  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
1056  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
-
1057 
-
1058  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
-
1059  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
-
1060 
-
1061  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1062  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
-
1063  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1064  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
994  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
+
995  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
996  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
997  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
998 
+
999  velx = velx_arr(i,j,zlo);
+
1000  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
+
1001  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
+
1002  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
+
1003  + cons_arr(ic ,jc,zlo,Rho_comp) );
+
1004 
+
1005  amrex::Real umean = um_arr(i,j,zlo);
+
1006  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
+
1007  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
+
1008 
+
1009  // Note: The surface mean shear stress is decomposed into tau_xz by
+
1010  // multiplying the modeled shear stress (rho*ustar^2) with
+
1011  // a factor of umean/wsp_mean for directionality; this factor
+
1012  // modifies the denominator from what is in Moeng 1984.
+
1013  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1014  amrex::Real num1 = wsp * umean;
+
1015  amrex::Real num2 = wsp_mean * (velx-umean);
+
1016  amrex::Real stressx = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
+
1017  amrex::Real deltaz = dz * (zlo - k);
+
1018 
+
1019  if (exp_most) {
+
1020  // surface gradient equal to gradient at first zface
+
1021  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
+
1022  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
+
1023  } else {
+
1024  int ie, je;
+
1025  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
+
1026  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1027  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1028  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1029  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
+
1030  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
+
1031  eta = amrex::max(eta,eta_eps);
+
1032  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
+
1033  }
+
1034 
+
1035  return stressx;
+
1036  }
+
1037 
+
1038  AMREX_GPU_DEVICE
+
1039  AMREX_FORCE_INLINE
+
1040  amrex::Real
+
1041  compute_v_flux (const int& i,
+
1042  const int& j,
+
1043  const int& k,
+
1044  const int& icomp,
+
1045  const amrex::Real& dz,
+
1046  const amrex::Real& dz1,
+
1047  const bool& exp_most,
+
1048  const amrex::Array4<const amrex::Real>& eta_arr,
+
1049  const amrex::Array4<const amrex::Real>& cons_arr,
+
1050  const amrex::Array4<const amrex::Real>& velx_arr,
+
1051  const amrex::Array4<const amrex::Real>& vely_arr,
+
1052  const amrex::Array4<const amrex::Real>& umm_arr,
+
1053  const amrex::Array4<const amrex::Real>& vm_arr,
+
1054  const amrex::Array4<const amrex::Real>& u_star_arr,
+
1055  const amrex::Array4<amrex::Real>& dest_arr) const
+
1056  {
+
1057  amrex::Real velx, vely, rho, eta;
+
1058  int ix, ic, jc;
+
1059 
+
1060  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
1061  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
+
1062 
+
1063  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
+
1064  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
1065 
-
1066  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
-
1067  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
-
1068  vely = vely_arr(i,j,zlo);
-
1069  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
-
1070  + cons_arr(ic,jc ,zlo,Rho_comp) );
-
1071 
-
1072  amrex::Real vmean = vm_arr(i,j,zlo);
-
1073  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
-
1074  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
-
1075 
-
1076  // Note: The surface mean shear stress is decomposed into tau_yz by
-
1077  // multiplying the modeled shear stress (rho*ustar^2) with
-
1078  // a factor of vmean/wsp_mean for directionality; this factor
-
1079  // modifies the denominator from what is in Moeng 1984.
-
1080  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1081  amrex::Real num1 = wsp * vmean;
-
1082  amrex::Real num2 = wsp_mean * (vely-vmean);
-
1083  amrex::Real stressy = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
-
1084  amrex::Real deltaz = dz * (zlo - k);
-
1085 
-
1086  if (exp_most) {
-
1087  // surface gradient equal to gradient at first zface
-
1088  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
-
1089  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
-
1090  } else {
-
1091  int ie, je;
-
1092  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1093  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
-
1094  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1095  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1096  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
-
1097  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
-
1098  eta = amrex::max(eta,eta_eps);
-
1099  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
-
1100  }
-
1101 
-
1102  return stressy;
-
1103  }
-
1104 
-
1105 private:
-
1106  int zlo;
-
1107  const amrex::Real eps = 1e-15;
-
1108  const amrex::Real eta_eps = 1e-8;
-
1109 };
-
1110 
-
1111 
-
1112 /**
-
1113  * Donelan flux formulation
-
1114  */
-
1115 struct donelan_flux
-
1116 {
-
1117  donelan_flux (int l_zlo)
-
1118  : zlo(l_zlo) {}
-
1119 
-
1120 
-
1121  AMREX_GPU_DEVICE
-
1122  AMREX_FORCE_INLINE
-
1123  amrex::Real
-
1124  compute_q_flux (const int& i,
-
1125  const int& j,
-
1126  const int& k,
-
1127  const int& n,
-
1128  const int& icomp,
-
1129  const amrex::Real& dz,
-
1130  const amrex::Real& /*dz1*/,
-
1131  const bool& exp_most,
-
1132  const amrex::Array4<const amrex::Real>& eta_arr,
-
1133  const amrex::Array4<const amrex::Real>& cons_arr,
-
1134  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
-
1135  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
-
1136  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
-
1137  const amrex::Array4<const amrex::Real>& /*qm_arr*/,
-
1138  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1139  const amrex::Array4<const amrex::Real>& /*q_star_arr*/,
-
1140  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
-
1141  const amrex::Array4<amrex::Real>& dest_arr) const
-
1142  {
-
1143  amrex::Real rho, eta, qv;
-
1144 
-
1145  int ic, jc;
-
1146  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1147  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1148  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1149  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1150 
-
1151  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
1152  qv = cons_arr(ic,jc,zlo,RhoQ1_comp) / rho;
-
1153 
-
1154  // TODO: Integrate MOST with moisture and DONELAN FLUX type
-
1155  amrex::Real moflux = 0.0;
-
1156  amrex::Real deltaz = dz * (zlo - k);
-
1157 
-
1158  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for Donelan moisture flux");
-
1159 
-
1160  int ie, je;
-
1161  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1162  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1163  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1164  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1165  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
-
1166  eta = amrex::max(eta,eta_eps);
-
1167  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
-
1168 
-
1169  return moflux;
-
1170  }
-
1171 
-
1172  AMREX_GPU_DEVICE
-
1173  AMREX_FORCE_INLINE
-
1174  amrex::Real
-
1175  compute_t_flux (const int& i,
-
1176  const int& j,
-
1177  const int& k,
-
1178  const int& n,
-
1179  const int& icomp,
-
1180  const amrex::Real& dz,
-
1181  const amrex::Real& dz1,
-
1182  const bool& exp_most,
-
1183  const amrex::Array4<const amrex::Real>& eta_arr,
-
1184  const amrex::Array4<const amrex::Real>& cons_arr,
-
1185  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
-
1186  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
-
1187  const amrex::Array4<const amrex::Real>& umm_arr,
-
1188  const amrex::Array4<const amrex::Real>& tm_arr,
-
1189  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1190  const amrex::Array4<const amrex::Real>& /*t_star_arr*/,
-
1191  const amrex::Array4<const amrex::Real>& t_surf_arr,
-
1192  const amrex::Array4<amrex::Real>& dest_arr) const
-
1193  {
-
1194  amrex::Real rho, theta, eta;
-
1195 
-
1196  int ic, jc;
-
1197  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1198  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1199  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1200  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1201 
-
1202  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
1203  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
-
1204 
-
1205  amrex::Real Cd = 0.0012;
-
1206  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
-
1207  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
-
1208  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
-
1209  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
-
1210  amrex::Real deltaz = dz * (zlo - k);
+
1066  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1067  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
+
1068  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1069  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1070 
+
1071  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
+
1072  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
+
1073  vely = vely_arr(i,j,zlo);
+
1074  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
+
1075  + cons_arr(ic,jc ,zlo,Rho_comp) );
+
1076 
+
1077  amrex::Real vmean = vm_arr(i,j,zlo);
+
1078  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
+
1079  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
+
1080 
+
1081  // Note: The surface mean shear stress is decomposed into tau_yz by
+
1082  // multiplying the modeled shear stress (rho*ustar^2) with
+
1083  // a factor of vmean/wsp_mean for directionality; this factor
+
1084  // modifies the denominator from what is in Moeng 1984.
+
1085  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1086  amrex::Real num1 = wsp * vmean;
+
1087  amrex::Real num2 = wsp_mean * (vely-vmean);
+
1088  amrex::Real stressy = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
+
1089  amrex::Real deltaz = dz * (zlo - k);
+
1090 
+
1091  if (exp_most) {
+
1092  // surface gradient equal to gradient at first zface
+
1093  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
+
1094  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
+
1095  } else {
+
1096  int ie, je;
+
1097  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1098  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
+
1099  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1100  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1101  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
+
1102  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
+
1103  eta = amrex::max(eta,eta_eps);
+
1104  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
+
1105  }
+
1106 
+
1107  return stressy;
+
1108  }
+
1109 
+
1110 private:
+
1111  int zlo;
+
1112  const amrex::Real eps = 1e-15;
+
1113  const amrex::Real eta_eps = 1e-8;
+
1114 };
+
1115 
+
1116 
+
1117 /**
+
1118  * Donelan flux formulation
+
1119  */
+
1120 struct donelan_flux
+
1121 {
+
1122  donelan_flux (int l_zlo)
+
1123  : zlo(l_zlo) {}
+
1124 
+
1125 
+
1126  AMREX_GPU_DEVICE
+
1127  AMREX_FORCE_INLINE
+
1128  amrex::Real
+
1129  compute_q_flux (const int& i,
+
1130  const int& j,
+
1131  const int& k,
+
1132  const int& n,
+
1133  const int& icomp,
+
1134  const amrex::Real& dz,
+
1135  const amrex::Real& dz1,
+
1136  const bool& exp_most,
+
1137  const amrex::Array4<const amrex::Real>& eta_arr,
+
1138  const amrex::Array4<const amrex::Real>& cons_arr,
+
1139  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
+
1140  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
+
1141  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
+
1142  const amrex::Array4<const amrex::Real>& /*qm_arr*/,
+
1143  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1144  const amrex::Array4<const amrex::Real>& /*q_star_arr*/,
+
1145  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
+
1146  const amrex::Array4<amrex::Real>& dest_arr) const
+
1147  {
+
1148  amrex::Real rho, eta, qv;
+
1149 
+
1150  int ic, jc;
+
1151  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1152  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1153  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1154  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1155 
+
1156  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
1157  qv = cons_arr(ic,jc,zlo,RhoQ1_comp) / rho;
+
1158 
+
1159  // TODO: Integrate MOST with moisture and DONELAN FLUX type
+
1160  amrex::Real moflux = 0.0;
+
1161  amrex::Real deltaz = dz * (zlo - k);
+
1162 
+
1163  if (exp_most) {
+
1164  // surface gradient equal to gradient at first zface
+
1165  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
+
1166  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
+
1167  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
+
1168  } else {
+
1169  int ie, je;
+
1170  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1171  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1172  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1173  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1174  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
+
1175  eta = amrex::max(eta,eta_eps);
+
1176  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
+
1177  }
+
1178 
+
1179  return moflux;
+
1180  }
+
1181 
+
1182  AMREX_GPU_DEVICE
+
1183  AMREX_FORCE_INLINE
+
1184  amrex::Real
+
1185  compute_t_flux (const int& i,
+
1186  const int& j,
+
1187  const int& k,
+
1188  const int& n,
+
1189  const int& icomp,
+
1190  const amrex::Real& dz,
+
1191  const amrex::Real& dz1,
+
1192  const bool& exp_most,
+
1193  const amrex::Array4<const amrex::Real>& eta_arr,
+
1194  const amrex::Array4<const amrex::Real>& cons_arr,
+
1195  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
+
1196  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
+
1197  const amrex::Array4<const amrex::Real>& umm_arr,
+
1198  const amrex::Array4<const amrex::Real>& tm_arr,
+
1199  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1200  const amrex::Array4<const amrex::Real>& /*t_star_arr*/,
+
1201  const amrex::Array4<const amrex::Real>& t_surf_arr,
+
1202  const amrex::Array4<amrex::Real>& dest_arr) const
+
1203  {
+
1204  amrex::Real rho, theta, eta;
+
1205 
+
1206  int ic, jc;
+
1207  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1208  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1209  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1210  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
1211 
-
1212  if (exp_most) {
-
1213  // surface gradient equal to gradient at first zface
-
1214  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
-
1215  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
-
1216  } else {
-
1217  int ie, je;
-
1218  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1219  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1220  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1221  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1222  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
-
1223  eta = amrex::max(eta,eta_eps);
-
1224  // Note: Kh = eta/rho
-
1225  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
-
1226  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
-
1227  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
-
1228  }
-
1229 
-
1230  return moflux;
-
1231  }
-
1232 
-
1233  AMREX_GPU_DEVICE
-
1234  AMREX_FORCE_INLINE
-
1235  amrex::Real
-
1236  compute_u_flux (const int& i,
-
1237  const int& j,
-
1238  const int& k,
-
1239  const int& icomp,
-
1240  const amrex::Real& dz,
-
1241  const amrex::Real& dz1,
-
1242  const bool& exp_most,
-
1243  const amrex::Array4<const amrex::Real>& eta_arr,
-
1244  const amrex::Array4<const amrex::Real>& cons_arr,
-
1245  const amrex::Array4<const amrex::Real>& velx_arr,
-
1246  const amrex::Array4<const amrex::Real>& vely_arr,
-
1247  const amrex::Array4<const amrex::Real>& umm_arr,
-
1248  const amrex::Array4<const amrex::Real>& /*um_arr*/,
-
1249  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1250  const amrex::Array4<amrex::Real>& dest_arr) const
-
1251  {
-
1252  amrex::Real velx, vely, rho, eta;
-
1253  int jy, ic, jc;
-
1254 
-
1255  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
-
1256  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
-
1257 
-
1258  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
1259  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
-
1260 
-
1261  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
-
1262  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1263  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1264  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1265 
-
1266  velx = velx_arr(i,j,zlo);
-
1267  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
-
1268  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
-
1269  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
-
1270  + cons_arr(ic ,jc,zlo,Rho_comp) );
-
1271 
-
1272  amrex::Real Cd = 0.001;
-
1273  const amrex::Real c = 7e-5;
-
1274  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1275  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
-
1276  if (wsp_mean <= 5.0) {
-
1277  Cd = 0.001;
-
1278  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
-
1279  Cd = 0.001 + c * (wsp_mean - 5.0);
-
1280  } else {
-
1281  Cd = 0.0024;
-
1282  }
-
1283  amrex::Real stressx = rho * Cd * velx * wsp;
-
1284  amrex::Real deltaz = dz * (zlo - k);
-
1285 
-
1286  if (exp_most) {
-
1287  // surface gradient equal to gradient at first zface
-
1288  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
-
1289  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
+
1212  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
1213  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
+
1214 
+
1215  amrex::Real Cd = 0.0012;
+
1216  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
+
1217  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
+
1218  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
+
1219  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
+
1220  amrex::Real deltaz = dz * (zlo - k);
+
1221 
+
1222  if (exp_most) {
+
1223  // surface gradient equal to gradient at first zface
+
1224  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
+
1225  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
+
1226  } else {
+
1227  int ie, je;
+
1228  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1229  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1230  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1231  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1232  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
+
1233  eta = amrex::max(eta,eta_eps);
+
1234  // Note: Kh = eta/rho
+
1235  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
+
1236  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
+
1237  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
+
1238  }
+
1239 
+
1240  return moflux;
+
1241  }
+
1242 
+
1243  AMREX_GPU_DEVICE
+
1244  AMREX_FORCE_INLINE
+
1245  amrex::Real
+
1246  compute_u_flux (const int& i,
+
1247  const int& j,
+
1248  const int& k,
+
1249  const int& icomp,
+
1250  const amrex::Real& dz,
+
1251  const amrex::Real& dz1,
+
1252  const bool& exp_most,
+
1253  const amrex::Array4<const amrex::Real>& eta_arr,
+
1254  const amrex::Array4<const amrex::Real>& cons_arr,
+
1255  const amrex::Array4<const amrex::Real>& velx_arr,
+
1256  const amrex::Array4<const amrex::Real>& vely_arr,
+
1257  const amrex::Array4<const amrex::Real>& umm_arr,
+
1258  const amrex::Array4<const amrex::Real>& /*um_arr*/,
+
1259  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1260  const amrex::Array4<amrex::Real>& dest_arr) const
+
1261  {
+
1262  amrex::Real velx, vely, rho, eta;
+
1263  int jy, ic, jc;
+
1264 
+
1265  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
+
1266  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
+
1267 
+
1268  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
1269  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
+
1270 
+
1271  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
+
1272  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1273  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1274  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1275 
+
1276  velx = velx_arr(i,j,zlo);
+
1277  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
+
1278  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
+
1279  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
+
1280  + cons_arr(ic ,jc,zlo,Rho_comp) );
+
1281 
+
1282  amrex::Real Cd = 0.001;
+
1283  const amrex::Real c = 7e-5;
+
1284  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1285  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
+
1286  if (wsp_mean <= 5.0) {
+
1287  Cd = 0.001;
+
1288  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
+
1289  Cd = 0.001 + c * (wsp_mean - 5.0);
1290  } else {
-
1291  int ie, je;
-
1292  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
-
1293  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1294  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1295  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1296  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
-
1297  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
-
1298  eta = amrex::max(eta,eta_eps);
-
1299  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
-
1300  }
-
1301 
-
1302  return stressx;
-
1303  }
-
1304 
-
1305  AMREX_GPU_DEVICE
-
1306  AMREX_FORCE_INLINE
-
1307  amrex::Real
-
1308  compute_v_flux (const int& i,
-
1309  const int& j,
-
1310  const int& k,
-
1311  const int& icomp,
-
1312  const amrex::Real& dz,
-
1313  const amrex::Real& dz1,
-
1314  const bool& exp_most,
-
1315  const amrex::Array4<const amrex::Real>& eta_arr,
-
1316  const amrex::Array4<const amrex::Real>& cons_arr,
-
1317  const amrex::Array4<const amrex::Real>& velx_arr,
-
1318  const amrex::Array4<const amrex::Real>& vely_arr,
-
1319  const amrex::Array4<const amrex::Real>& umm_arr,
-
1320  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
-
1321  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1322  const amrex::Array4<amrex::Real>& dest_arr) const
-
1323  {
-
1324  amrex::Real velx, vely, rho, eta;
-
1325  int ix, ic, jc;
-
1326 
-
1327  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
1328  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
-
1329 
-
1330  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
-
1331  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
-
1332 
-
1333  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1334  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
-
1335  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1336  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1337 
-
1338  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
-
1339  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
-
1340  vely = vely_arr(i,j,zlo);
-
1341  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
-
1342  + cons_arr(ic,jc ,zlo,Rho_comp) );
-
1343 
-
1344  amrex::Real Cd = 0.001;
-
1345  const amrex::Real c = 7e-5;
-
1346  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1347  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
-
1348  if (wsp_mean <= 5.0) {
-
1349  Cd = 0.001;
-
1350  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
-
1351  Cd = 0.001 + c * (wsp_mean - 5.0);
-
1352  } else {
-
1353  Cd = 0.0024;
-
1354  }
-
1355  amrex::Real stressy = rho * Cd * vely * wsp;
-
1356  amrex::Real deltaz = dz * (zlo - k);
-
1357 
-
1358  if (exp_most) {
-
1359  // surface gradient equal to gradient at first zface
-
1360  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
-
1361  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
+
1291  Cd = 0.0024;
+
1292  }
+
1293  amrex::Real stressx = rho * Cd * velx * wsp;
+
1294  amrex::Real deltaz = dz * (zlo - k);
+
1295 
+
1296  if (exp_most) {
+
1297  // surface gradient equal to gradient at first zface
+
1298  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
+
1299  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
+
1300  } else {
+
1301  int ie, je;
+
1302  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
+
1303  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1304  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1305  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1306  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
+
1307  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
+
1308  eta = amrex::max(eta,eta_eps);
+
1309  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
+
1310  }
+
1311 
+
1312  return stressx;
+
1313  }
+
1314 
+
1315  AMREX_GPU_DEVICE
+
1316  AMREX_FORCE_INLINE
+
1317  amrex::Real
+
1318  compute_v_flux (const int& i,
+
1319  const int& j,
+
1320  const int& k,
+
1321  const int& icomp,
+
1322  const amrex::Real& dz,
+
1323  const amrex::Real& dz1,
+
1324  const bool& exp_most,
+
1325  const amrex::Array4<const amrex::Real>& eta_arr,
+
1326  const amrex::Array4<const amrex::Real>& cons_arr,
+
1327  const amrex::Array4<const amrex::Real>& velx_arr,
+
1328  const amrex::Array4<const amrex::Real>& vely_arr,
+
1329  const amrex::Array4<const amrex::Real>& umm_arr,
+
1330  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
+
1331  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1332  const amrex::Array4<amrex::Real>& dest_arr) const
+
1333  {
+
1334  amrex::Real velx, vely, rho, eta;
+
1335  int ix, ic, jc;
+
1336 
+
1337  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
1338  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
+
1339 
+
1340  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
+
1341  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
+
1342 
+
1343  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1344  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
+
1345  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1346  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1347 
+
1348  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
+
1349  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
+
1350  vely = vely_arr(i,j,zlo);
+
1351  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
+
1352  + cons_arr(ic,jc ,zlo,Rho_comp) );
+
1353 
+
1354  amrex::Real Cd = 0.001;
+
1355  const amrex::Real c = 7e-5;
+
1356  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1357  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
+
1358  if (wsp_mean <= 5.0) {
+
1359  Cd = 0.001;
+
1360  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
+
1361  Cd = 0.001 + c * (wsp_mean - 5.0);
1362  } else {
-
1363  int ie, je;
-
1364  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1365  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
-
1366  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1367  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1368  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
-
1369  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
-
1370  eta = amrex::max(eta,eta_eps);
-
1371  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
-
1372  }
-
1373 
-
1374  return stressy;
-
1375  }
-
1376 
-
1377 private:
-
1378  int zlo;
-
1379  const amrex::Real eta_eps = 1e-8;
-
1380 };
-
1381 
-
1382 
-
1383 /**
-
1384  * Custom flux formulation
-
1385  */
-
1386 struct custom_flux
-
1387 {
-
1388  custom_flux (int l_zlo)
-
1389  : zlo(l_zlo) {}
-
1390 
+
1363  Cd = 0.0024;
+
1364  }
+
1365  amrex::Real stressy = rho * Cd * vely * wsp;
+
1366  amrex::Real deltaz = dz * (zlo - k);
+
1367 
+
1368  if (exp_most) {
+
1369  // surface gradient equal to gradient at first zface
+
1370  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
+
1371  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
+
1372  } else {
+
1373  int ie, je;
+
1374  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1375  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
+
1376  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1377  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1378  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
+
1379  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
+
1380  eta = amrex::max(eta,eta_eps);
+
1381  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
+
1382  }
+
1383 
+
1384  return stressy;
+
1385  }
+
1386 
+
1387 private:
+
1388  int zlo;
+
1389  const amrex::Real eta_eps = 1e-8;
+
1390 };
1391 
-
1392  AMREX_GPU_DEVICE
-
1393  AMREX_FORCE_INLINE
-
1394  amrex::Real
-
1395  compute_q_flux (const int& i,
-
1396  const int& j,
-
1397  const int& k,
-
1398  const int& n,
-
1399  const int& icomp,
-
1400  const amrex::Real& dz,
-
1401  const amrex::Real& /*dz1*/,
-
1402  const bool& exp_most,
-
1403  const amrex::Array4<const amrex::Real>& eta_arr,
-
1404  const amrex::Array4<const amrex::Real>& cons_arr,
-
1405  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
-
1406  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
-
1407  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
-
1408  const amrex::Array4<const amrex::Real>& /*qm_arr*/,
-
1409  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1410  const amrex::Array4<const amrex::Real>& q_star_arr,
-
1411  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
-
1412  const amrex::Array4<amrex::Real>& dest_arr) const
-
1413  {
-
1414  amrex::Real rho, eta;
-
1415 
-
1416  int ic, jc;
-
1417  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1418  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1419  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1420  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1421 
-
1422  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
1423 
-
1424  amrex::Real qstar = q_star_arr(ic,jc,zlo);
-
1425  amrex::Real moflux = (std::abs(qstar) > eps) ? -rho * qstar : 0.0;
-
1426  amrex::Real deltaz = dz * (zlo - k);
-
1427 
-
1428  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for custom moisture flux");
-
1429 
-
1430  int ie, je;
-
1431  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1432  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1433  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1434  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1435  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
-
1436  eta = amrex::max(eta,eta_eps);
-
1437  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
-
1438 
-
1439  return moflux;
-
1440  }
-
1441 
-
1442  AMREX_GPU_DEVICE
-
1443  AMREX_FORCE_INLINE
-
1444  amrex::Real
-
1445  compute_t_flux (const int& i,
-
1446  const int& j,
-
1447  const int& k,
-
1448  const int& n,
-
1449  const int& icomp,
-
1450  const amrex::Real& dz,
-
1451  const amrex::Real& dz1,
-
1452  const bool& exp_most,
-
1453  const amrex::Array4<const amrex::Real>& eta_arr,
-
1454  const amrex::Array4<const amrex::Real>& cons_arr,
-
1455  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
-
1456  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
-
1457  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
-
1458  const amrex::Array4<const amrex::Real>& /*tm_arr*/,
-
1459  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
1460  const amrex::Array4<const amrex::Real>& t_star_arr,
-
1461  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
-
1462  const amrex::Array4<amrex::Real>& dest_arr) const
-
1463  {
-
1464  amrex::Real rho, eta;
-
1465 
-
1466  int ic, jc;
-
1467  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1468  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1469  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1470  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1471 
-
1472  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
1473 
-
1474  amrex::Real tstar = t_star_arr(ic,jc,zlo);
-
1475  amrex::Real moflux = (std::abs(tstar) > eps) ? -rho * tstar : 0.0;
-
1476  amrex::Real deltaz = dz * (zlo - k);
-
1477 
-
1478  if (exp_most) {
-
1479  // surface gradient equal to gradient at first zface
-
1480  amrex::Real thetagrad = ( cons_arr(ic,jc,zlo+1,RhoTheta_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
-
1481  - cons_arr(ic,jc,zlo ,RhoTheta_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
-
1482  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - rho*thetagrad * deltaz;
-
1483  } else {
-
1484  int ie, je;
-
1485  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1486  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1487  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1488  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1489  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
-
1490  eta = amrex::max(eta,eta_eps);
-
1491  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
-
1492  }
-
1493 
-
1494  return moflux;
-
1495  }
-
1496 
-
1497  AMREX_GPU_DEVICE
-
1498  AMREX_FORCE_INLINE
-
1499  amrex::Real
-
1500  compute_u_flux (const int& i,
-
1501  const int& j,
-
1502  const int& k,
-
1503  const int& icomp,
-
1504  const amrex::Real& dz,
-
1505  const amrex::Real& dz1,
-
1506  const bool& exp_most,
-
1507  const amrex::Array4<const amrex::Real>& eta_arr,
-
1508  const amrex::Array4<const amrex::Real>& cons_arr,
-
1509  const amrex::Array4<const amrex::Real>& velx_arr,
-
1510  const amrex::Array4<const amrex::Real>& vely_arr,
-
1511  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
-
1512  const amrex::Array4<const amrex::Real>& /*um_arr*/,
-
1513  const amrex::Array4<const amrex::Real>& u_star_arr,
-
1514  const amrex::Array4<amrex::Real>& dest_arr) const
-
1515  {
-
1516  amrex::Real velx, vely, rho, eta;
-
1517  int jy, ic, jc;
-
1518 
-
1519  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
-
1520  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
-
1521 
-
1522  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
1523  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
-
1524 
-
1525  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
-
1526  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
1527  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1528  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1529 
-
1530  velx = velx_arr(i,j,zlo);
-
1531  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
-
1532  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
-
1533  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
-
1534  + cons_arr(ic ,jc,zlo,Rho_comp) );
-
1535 
-
1536  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
-
1537  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1538  amrex::Real stressx = rho * ustar * ustar * velx / wsp;
-
1539  amrex::Real deltaz = dz * (zlo - k);
-
1540 
-
1541  if (exp_most) {
-
1542  // surface gradient equal to gradient at first zface
-
1543  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
-
1544  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
-
1545  } else {
-
1546  int ie, je;
-
1547  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
-
1548  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
1549  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1550  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1551  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
-
1552  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
-
1553  eta = amrex::max(eta,eta_eps);
-
1554  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
-
1555  }
-
1556 
-
1557  return stressx;
-
1558  }
-
1559 
-
1560  AMREX_GPU_DEVICE
-
1561  AMREX_FORCE_INLINE
-
1562  amrex::Real
-
1563  compute_v_flux (const int& i,
-
1564  const int& j,
-
1565  const int& k,
-
1566  const int& icomp,
-
1567  const amrex::Real& dz,
-
1568  const amrex::Real& dz1,
-
1569  const bool& exp_most,
-
1570  const amrex::Array4<const amrex::Real>& eta_arr,
-
1571  const amrex::Array4<const amrex::Real>& cons_arr,
-
1572  const amrex::Array4<const amrex::Real>& velx_arr,
-
1573  const amrex::Array4<const amrex::Real>& vely_arr,
-
1574  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
-
1575  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
-
1576  const amrex::Array4<const amrex::Real>& u_star_arr,
-
1577  const amrex::Array4<amrex::Real>& dest_arr) const
-
1578  {
-
1579  amrex::Real velx, vely, rho, eta;
-
1580  int ix, ic, jc;
-
1581 
-
1582  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
1583  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
-
1584 
-
1585  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
-
1586  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
-
1587 
-
1588  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
1589  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
-
1590  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
1591  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
1592 
-
1593  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
-
1594  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
-
1595  vely = vely_arr(i,j,zlo);
-
1596  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
-
1597  + cons_arr(ic,jc ,zlo,Rho_comp) );
-
1598 
-
1599  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
-
1600  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
1601  amrex::Real stressy = rho * ustar * ustar * vely / wsp;
-
1602  amrex::Real deltaz = dz * (zlo - k);
-
1603 
-
1604  if (exp_most) {
-
1605  // surface gradient equal to gradient at first zface
-
1606  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
-
1607  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
-
1608  } else {
-
1609  int ie, je;
-
1610  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
1611  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
-
1612  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
1613  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
1614  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
-
1615  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
-
1616  eta = amrex::max(eta,eta_eps);
-
1617  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
-
1618  }
-
1619 
-
1620  return stressy;
-
1621  }
-
1622 
-
1623 private:
-
1624  int zlo;
-
1625  const amrex::Real eps = 1e-15;
-
1626  const amrex::Real eta_eps = 1e-8;
-
1627 };
-
1628 #endif
+
1392 
+
1393 /**
+
1394  * Custom flux formulation
+
1395  */
+
1396 struct custom_flux
+
1397 {
+
1398  custom_flux (int l_zlo)
+
1399  : zlo(l_zlo) {}
+
1400 
+
1401 
+
1402  AMREX_GPU_DEVICE
+
1403  AMREX_FORCE_INLINE
+
1404  amrex::Real
+
1405  compute_q_flux (const int& i,
+
1406  const int& j,
+
1407  const int& k,
+
1408  const int& n,
+
1409  const int& icomp,
+
1410  const amrex::Real& dz,
+
1411  const amrex::Real& dz1,
+
1412  const bool& exp_most,
+
1413  const amrex::Array4<const amrex::Real>& eta_arr,
+
1414  const amrex::Array4<const amrex::Real>& cons_arr,
+
1415  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
+
1416  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
+
1417  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
+
1418  const amrex::Array4<const amrex::Real>& /*qm_arr*/,
+
1419  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1420  const amrex::Array4<const amrex::Real>& q_star_arr,
+
1421  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
+
1422  const amrex::Array4<amrex::Real>& dest_arr) const
+
1423  {
+
1424  amrex::Real rho, eta;
+
1425 
+
1426  int ic, jc;
+
1427  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1428  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1429  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1430  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1431 
+
1432  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
1433 
+
1434  amrex::Real qstar = q_star_arr(ic,jc,zlo);
+
1435  amrex::Real moflux = (std::abs(qstar) > eps) ? -rho * qstar : 0.0;
+
1436  amrex::Real deltaz = dz * (zlo - k);
+
1437 
+
1438  if (exp_most) {
+
1439  // surface gradient equal to gradient at first zface
+
1440  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
+
1441  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
+
1442  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
+
1443  } else {
+
1444  int ie, je;
+
1445  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1446  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1447  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1448  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1449  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
+
1450  eta = amrex::max(eta,eta_eps);
+
1451  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
+
1452  }
+
1453 
+
1454  return moflux;
+
1455  }
+
1456 
+
1457  AMREX_GPU_DEVICE
+
1458  AMREX_FORCE_INLINE
+
1459  amrex::Real
+
1460  compute_t_flux (const int& i,
+
1461  const int& j,
+
1462  const int& k,
+
1463  const int& n,
+
1464  const int& icomp,
+
1465  const amrex::Real& dz,
+
1466  const amrex::Real& dz1,
+
1467  const bool& exp_most,
+
1468  const amrex::Array4<const amrex::Real>& eta_arr,
+
1469  const amrex::Array4<const amrex::Real>& cons_arr,
+
1470  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
+
1471  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
+
1472  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
+
1473  const amrex::Array4<const amrex::Real>& /*tm_arr*/,
+
1474  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
1475  const amrex::Array4<const amrex::Real>& t_star_arr,
+
1476  const amrex::Array4<const amrex::Real>& /*t_surf_arr*/,
+
1477  const amrex::Array4<amrex::Real>& dest_arr) const
+
1478  {
+
1479  amrex::Real rho, eta;
+
1480 
+
1481  int ic, jc;
+
1482  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1483  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1484  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1485  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1486 
+
1487  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
1488 
+
1489  amrex::Real tstar = t_star_arr(ic,jc,zlo);
+
1490  amrex::Real moflux = (std::abs(tstar) > eps) ? -rho * tstar : 0.0;
+
1491  amrex::Real deltaz = dz * (zlo - k);
+
1492 
+
1493  if (exp_most) {
+
1494  // surface gradient equal to gradient at first zface
+
1495  amrex::Real thetagrad = ( cons_arr(ic,jc,zlo+1,RhoTheta_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
+
1496  - cons_arr(ic,jc,zlo ,RhoTheta_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
+
1497  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - rho*thetagrad * deltaz;
+
1498  } else {
+
1499  int ie, je;
+
1500  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1501  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1502  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1503  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1504  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
+
1505  eta = amrex::max(eta,eta_eps);
+
1506  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
+
1507  }
+
1508 
+
1509  return moflux;
+
1510  }
+
1511 
+
1512  AMREX_GPU_DEVICE
+
1513  AMREX_FORCE_INLINE
+
1514  amrex::Real
+
1515  compute_u_flux (const int& i,
+
1516  const int& j,
+
1517  const int& k,
+
1518  const int& icomp,
+
1519  const amrex::Real& dz,
+
1520  const amrex::Real& dz1,
+
1521  const bool& exp_most,
+
1522  const amrex::Array4<const amrex::Real>& eta_arr,
+
1523  const amrex::Array4<const amrex::Real>& cons_arr,
+
1524  const amrex::Array4<const amrex::Real>& velx_arr,
+
1525  const amrex::Array4<const amrex::Real>& vely_arr,
+
1526  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
+
1527  const amrex::Array4<const amrex::Real>& /*um_arr*/,
+
1528  const amrex::Array4<const amrex::Real>& u_star_arr,
+
1529  const amrex::Array4<amrex::Real>& dest_arr) const
+
1530  {
+
1531  amrex::Real velx, vely, rho, eta;
+
1532  int jy, ic, jc;
+
1533 
+
1534  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
+
1535  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
+
1536 
+
1537  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
1538  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
+
1539 
+
1540  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
+
1541  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
1542  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1543  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1544 
+
1545  velx = velx_arr(i,j,zlo);
+
1546  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
+
1547  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
+
1548  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
+
1549  + cons_arr(ic ,jc,zlo,Rho_comp) );
+
1550 
+
1551  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
+
1552  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1553  amrex::Real stressx = rho * ustar * ustar * velx / wsp;
+
1554  amrex::Real deltaz = dz * (zlo - k);
+
1555 
+
1556  if (exp_most) {
+
1557  // surface gradient equal to gradient at first zface
+
1558  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
+
1559  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
+
1560  } else {
+
1561  int ie, je;
+
1562  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
+
1563  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
1564  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1565  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1566  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
+
1567  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
+
1568  eta = amrex::max(eta,eta_eps);
+
1569  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
+
1570  }
+
1571 
+
1572  return stressx;
+
1573  }
+
1574 
+
1575  AMREX_GPU_DEVICE
+
1576  AMREX_FORCE_INLINE
+
1577  amrex::Real
+
1578  compute_v_flux (const int& i,
+
1579  const int& j,
+
1580  const int& k,
+
1581  const int& icomp,
+
1582  const amrex::Real& dz,
+
1583  const amrex::Real& dz1,
+
1584  const bool& exp_most,
+
1585  const amrex::Array4<const amrex::Real>& eta_arr,
+
1586  const amrex::Array4<const amrex::Real>& cons_arr,
+
1587  const amrex::Array4<const amrex::Real>& velx_arr,
+
1588  const amrex::Array4<const amrex::Real>& vely_arr,
+
1589  const amrex::Array4<const amrex::Real>& /*umm_arr*/,
+
1590  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
+
1591  const amrex::Array4<const amrex::Real>& u_star_arr,
+
1592  const amrex::Array4<amrex::Real>& dest_arr) const
+
1593  {
+
1594  amrex::Real velx, vely, rho, eta;
+
1595  int ix, ic, jc;
+
1596 
+
1597  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
1598  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
+
1599 
+
1600  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
+
1601  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
+
1602 
+
1603  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
1604  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
+
1605  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
1606  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
1607 
+
1608  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
+
1609  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
+
1610  vely = vely_arr(i,j,zlo);
+
1611  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
+
1612  + cons_arr(ic,jc ,zlo,Rho_comp) );
+
1613 
+
1614  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
+
1615  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
1616  amrex::Real stressy = rho * ustar * ustar * vely / wsp;
+
1617  amrex::Real deltaz = dz * (zlo - k);
+
1618 
+
1619  if (exp_most) {
+
1620  // surface gradient equal to gradient at first zface
+
1621  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
+
1622  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
+
1623  } else {
+
1624  int ie, je;
+
1625  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
1626  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
+
1627  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
1628  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
1629  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
+
1630  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
+
1631  eta = amrex::max(eta,eta_eps);
+
1632  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
+
1633  }
+
1634 
+
1635  return stressy;
+
1636  }
+
1637 
+
1638 private:
+
1639  int zlo;
+
1640  const amrex::Real eps = 1e-15;
+
1641  const amrex::Real eta_eps = 1e-8;
+
1642 };
+
1643 #endif
ERF_Constants.H
KAPPA
constexpr amrex::Real KAPPA
Definition: ERF_Constants.H:20
@@ -1755,32 +1770,32 @@
adiabatic::iterate_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void iterate_flux(const int &i, const int &j, const int &k, const int &, const amrex::Array4< const amrex::Real > &z0_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &t_star_arr, const amrex::Array4< amrex::Real > &, const amrex::Array4< amrex::Real > &olen_arr, const amrex::Array4< amrex::Real > &, const amrex::Array4< amrex::Real > &, const amrex::Array4< amrex::Real > &) const
Definition: MOSTStress.H:81
adiabatic::sfuns
similarity_funs sfuns
Definition: MOSTStress.H:103
adiabatic::mdata
most_data mdata
Definition: MOSTStress.H:102
-
custom_flux
Definition: MOSTStress.H:1387
-
custom_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1563
-
custom_flux::zlo
int zlo
Definition: MOSTStress.H:1624
-
custom_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1500
-
custom_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1626
-
custom_flux::custom_flux
custom_flux(int l_zlo)
Definition: MOSTStress.H:1388
-
custom_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1445
-
custom_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1395
-
custom_flux::eps
const amrex::Real eps
Definition: MOSTStress.H:1625
-
donelan_flux
Definition: MOSTStress.H:1116
-
donelan_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1236
-
donelan_flux::donelan_flux
donelan_flux(int l_zlo)
Definition: MOSTStress.H:1117
-
donelan_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1124
-
donelan_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1175
-
donelan_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1379
-
donelan_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1308
-
donelan_flux::zlo
int zlo
Definition: MOSTStress.H:1378
+
custom_flux
Definition: MOSTStress.H:1397
+
custom_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1578
+
custom_flux::zlo
int zlo
Definition: MOSTStress.H:1639
+
custom_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1515
+
custom_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1641
+
custom_flux::custom_flux
custom_flux(int l_zlo)
Definition: MOSTStress.H:1398
+
custom_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1460
+
custom_flux::eps
const amrex::Real eps
Definition: MOSTStress.H:1640
+
custom_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1405
+
donelan_flux
Definition: MOSTStress.H:1121
+
donelan_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1246
+
donelan_flux::donelan_flux
donelan_flux(int l_zlo)
Definition: MOSTStress.H:1122
+
donelan_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1185
+
donelan_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1389
+
donelan_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1318
+
donelan_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1129
+
donelan_flux::zlo
int zlo
Definition: MOSTStress.H:1388
moeng_flux
Definition: MOSTStress.H:826
-
moeng_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:964
+
moeng_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:969
moeng_flux::moeng_flux
moeng_flux(int l_zlo)
Definition: MOSTStress.H:827
-
moeng_flux::zlo
int zlo
Definition: MOSTStress.H:1106
-
moeng_flux::eps
const amrex::Real eps
Definition: MOSTStress.H:1107
-
moeng_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1036
-
moeng_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1108
-
moeng_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:885
-
moeng_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:834
+
moeng_flux::zlo
int zlo
Definition: MOSTStress.H:1111
+
moeng_flux::eps
const amrex::Real eps
Definition: MOSTStress.H:1112
+
moeng_flux::compute_q_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:834
+
moeng_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:1041
+
moeng_flux::eta_eps
const amrex::Real eta_eps
Definition: MOSTStress.H:1113
+
moeng_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:890
most_data
Definition: MOSTStress.H:11
most_data::zref
amrex::Real zref
Reference height (m)
Definition: MOSTStress.H:13
most_data::Cnk_b2
amrex::Real Cnk_b2
Modified Charnock Eq (4) https://doi.org/10.1175/JAMC-D-17-0137.1.
Definition: MOSTStress.H:20
diff --git a/TerrainMetrics_8H.html b/TerrainMetrics_8H.html index 4889ce9f83..d23c0f0661 100644 --- a/TerrainMetrics_8H.html +++ b/TerrainMetrics_8H.html @@ -611,19 +611,21 @@

159  return met_h_eta;
160 }
-

Referenced by DiffusionSrcForState_T(), erf_fast_rhs_MT(), erf_fast_rhs_T(), erf_slow_rhs_pre(), ERFPhysBCFunct_v::impose_vertical_yvel_bcs(), and ERF::WritePlotFile().

+

Referenced by DiffusionSrcForState_T(), erf_fast_rhs_MT(), erf_fast_rhs_T(), erf_slow_rhs_pre(), ERFPhysBCFunct_v::impose_vertical_yvel_bcs(), MOSTAverage::set_rotated_fields(), and ERF::WritePlotFile().

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@@ -1016,19 +1018,21 @@

102  return met_h_xi;
103 }
-

Referenced by DiffusionSrcForState_T(), erf_fast_rhs_MT(), erf_fast_rhs_T(), erf_slow_rhs_pre(), ERFPhysBCFunct_u::impose_vertical_xvel_bcs(), and ERF::WritePlotFile().

+

Referenced by DiffusionSrcForState_T(), erf_fast_rhs_MT(), erf_fast_rhs_T(), erf_slow_rhs_pre(), ERFPhysBCFunct_u::impose_vertical_xvel_bcs(), MOSTAverage::set_rotated_fields(), and ERF::WritePlotFile().

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diff --git a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.map b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.map index 167c503f82..450dddbe20 100644 --- a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.map +++ b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.map @@ -1,9 +1,11 @@ - - - - - - - + + + + + + + + + diff --git a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.md5 b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.md5 index e03040de8a..e0a5094892 100644 --- a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.md5 +++ b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.md5 @@ -1 +1 @@ -4c62bca02ed6bff40bd92f1ab1758b1b \ No newline at end of file +f04b5333f149f927fe4c741993e47d6e \ No newline at end of file diff --git a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.png b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.png index cc67ec35fa..390983aa14 100644 Binary files a/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.png and b/TerrainMetrics_8H_a2116df83b61a39fb50b9a2d7474c00d7_icgraph.png differ diff --git a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.map b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.map index 07a8db4535..50ebe40af3 100644 --- a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.map +++ b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.map @@ -1,9 +1,11 @@ - - - - - - - + + + + + + + + + diff --git a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.md5 b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.md5 index bde018135f..6b478b2605 100644 --- a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.md5 +++ b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.md5 @@ -1 +1 @@ -3864c9f3d027f102b8c0e21a379ac92f \ No newline at end of file +e636dabab953330c64b0bb29c83703f0 \ No newline at end of file diff --git a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.png b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.png index 0c17515f4d..0e30727590 100644 Binary files a/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.png and b/TerrainMetrics_8H_ae609a5c1f84347b66e9a8b712271c4ce_icgraph.png differ diff --git a/TileNoZ_8H.html b/TileNoZ_8H.html index d40b98f5b7..80721da38d 100644 --- a/TileNoZ_8H.html +++ b/TileNoZ_8H.html @@ -190,50 +190,51 @@

20  }
21 }
-

Referenced by add_thin_body_sources(), ERF::Advance(), ERF::advance_dycore(), TurbulentPerturbation::calc_tpi_meanMag_perBox(), MOSTAverage::compute_plane_averages(), MOSTAverage::compute_region_averages(), ComputeTurbulentViscosityLES(), ERF::erf_enforce_hse(), erf_fast_rhs_N(), erf_fast_rhs_T(), erf_init_dens_hse(), erf_make_tau_terms(), erf_slow_rhs_pre(), SAM::IceFall(), Kessler::Init(), SAM::Init(), ERF::init_custom(), ERF::init_from_hse(), make_fast_coeffs(), make_sources(), TurbulentPerturbation::netZeroBuoyantAdd(), TurbulentPerturbation::netZeroBuoyantAdjust(), SAM::PrecipFall(), TurbulentPerturbation::pseudoRandomPert(), MOSTAverage::set_k_indices_T(), MOSTAverage::set_norm_indices_T(), MOSTAverage::set_norm_positions_T(), MOSTAverage::set_z_positions_T(), ERF::turbPert_amplitude(), MOSTAverage::write_averages(), MOSTAverage::write_k_indices(), MOSTAverage::write_norm_indices(), and MOSTAverage::write_xz_positions().

+

Referenced by add_thin_body_sources(), ERF::Advance(), ERF::advance_dycore(), TurbulentPerturbation::calc_tpi_meanMag_perBox(), MOSTAverage::compute_plane_averages(), MOSTAverage::compute_region_averages(), ComputeTurbulentViscosityLES(), ERF::erf_enforce_hse(), erf_fast_rhs_N(), erf_fast_rhs_T(), erf_init_dens_hse(), erf_make_tau_terms(), erf_slow_rhs_pre(), SAM::IceFall(), Kessler::Init(), SAM::Init(), ERF::init_custom(), ERF::init_from_hse(), make_fast_coeffs(), make_sources(), TurbulentPerturbation::netZeroBuoyantAdd(), TurbulentPerturbation::netZeroBuoyantAdjust(), SAM::PrecipFall(), TurbulentPerturbation::pseudoRandomPert(), MOSTAverage::set_k_indices_T(), MOSTAverage::set_norm_indices_T(), MOSTAverage::set_norm_positions_T(), MOSTAverage::set_rotated_fields(), MOSTAverage::set_z_positions_T(), ERF::turbPert_amplitude(), MOSTAverage::write_averages(), MOSTAverage::write_k_indices(), MOSTAverage::write_norm_indices(), and MOSTAverage::write_xz_positions().

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diff --git a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map index cff86b5bc0..4526273b9a 100644 --- a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map +++ b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map @@ -1,40 +1,41 @@ - + - - + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - - - - - - - - - + + + + + + + + + + + diff --git a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 index 8809de52da..99e8d9a475 100644 --- a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 +++ b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 @@ -1 +1 @@ -4b060725b1136605aa9fc04a8da2903d \ No newline at end of file +ddba20e281b945a29dbd7c5f631a1823 \ No newline at end of file diff --git a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.png b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.png index 459f367137..2fa77cf8a7 100644 Binary files a/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.png and b/TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.png differ diff --git a/classABLMost-members.html b/classABLMost-members.html index c70130ab9f..67592a8617 100644 --- a/classABLMost-members.html +++ b/classABLMost-members.html @@ -92,8 +92,8 @@ ABLMost(const amrex::Vector< amrex::Geometry > &geom, bool &use_exp_most, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab >>> &sst_lev, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::iMultiFab >>> &lmask_lev, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_data, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_flux, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Hwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Lwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &eddyDiffs, amrex::Real start_bdy_time=0.0, amrex::Real bdy_time_interval=0.0)ABLMostinlineexplicit cnk_aABLMostprivate compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)ABLMost - compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)ABLMost - compute_most_bcs(const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *heat_flux, MultiFab *z_phys, const Real &dz_no_terrain, const FluxCalc &flux_comp)ABLMost + compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)ABLMost + compute_most_bcs(const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *heat_flux, MultiFab *qv_flux, MultiFab *z_phys, const Real &dz_no_terrain, const FluxCalc &flux_comp)ABLMost custom_qstarABLMostprivate custom_tstarABLMostprivate custom_ustarABLMostprivate @@ -108,7 +108,7 @@ get_u_star(const int &lev)ABLMostinline get_z0(const int &lev)ABLMostinline get_zref()ABLMostinline - impose_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys)ABLMost + impose_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys)ABLMost m_bdy_time_intervalABLMostprivate m_eddyDiffs_levABLMostprivate m_exp_mostABLMostprivate @@ -119,28 +119,29 @@ m_lsm_flux_levABLMostprivate m_Lwave_levABLMostprivate m_maABLMostprivate - m_sst_levABLMostprivate - m_start_bdy_timeABLMostprivate - olenABLMostprivate - q_starABLMostprivate - rough_type_landABLMost - rough_type_seaABLMost - RoughCalcType enum nameABLMost - surf_heating_rateABLMostprivate - surf_tempABLMostprivate - surf_temp_fluxABLMostprivate - t_starABLMostprivate - t_surfABLMostprivate - theta_typeABLMost - ThetaCalcType enum nameABLMost - time_interp_sst(const int &lev, const amrex::Real &time)ABLMost - u_starABLMostprivate - update_fluxes(const int &lev, const amrex::Real &time, int max_iters=25)ABLMost - update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)ABLMostinline - update_surf_temp(const amrex::Real &time)ABLMostinline - use_moistureABLMostprivate - z0_constABLMostprivate - z_0ABLMostprivate + m_rotateABLMostprivate + m_sst_levABLMostprivate + m_start_bdy_timeABLMostprivate + olenABLMostprivate + q_starABLMostprivate + rough_type_landABLMost + rough_type_seaABLMost + RoughCalcType enum nameABLMost + surf_heating_rateABLMostprivate + surf_tempABLMostprivate + surf_temp_fluxABLMostprivate + t_starABLMostprivate + t_surfABLMostprivate + theta_typeABLMost + ThetaCalcType enum nameABLMost + time_interp_sst(const int &lev, const amrex::Real &time)ABLMost + u_starABLMostprivate + update_fluxes(const int &lev, const amrex::Real &time, int max_iters=25)ABLMost + update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)ABLMostinline + update_surf_temp(const amrex::Real &time)ABLMostinline + use_moistureABLMostprivate + z0_constABLMostprivate + z_0ABLMostprivate diff --git a/classABLMost.html b/classABLMost.html index a489ba74a7..d083ce741d 100644 --- a/classABLMost.html +++ b/classABLMost.html @@ -99,27 +99,27 @@
Collaboration graph
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[legend]
@@ -151,11 +151,11 @@ - - - - - + + + + + @@ -178,9 +178,9 @@ - - - + + +
template<typename FluxIter >
void compute_fluxes (const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)
 
void impose_most_bcs (const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys)
 
template<typename FluxCalc >
void compute_most_bcs (const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
 
void impose_most_bcs (const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys)
 
template<typename FluxCalc >
void compute_most_bcs (const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
 
void time_interp_sst (const int &lev, const amrex::Real &time)
 
void get_lsm_tsurf (const int &lev)
 
const amrex::FArrayBox * get_z0 (const int &lev)
 
template<typename FluxCalc >
void compute_most_bcs (const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *heat_flux, MultiFab *z_phys, const Real &dz_no_terrain, const FluxCalc &flux_comp)
 
template<typename FluxCalc >
void compute_most_bcs (const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *heat_flux, MultiFab *qv_flux, MultiFab *z_phys, const Real &dz_no_terrain, const FluxCalc &flux_comp)
 
@@ -199,6 +199,8 @@ + + @@ -284,11 +286,11 @@

CUSTOM 

Public Attributes

 
bool m_exp_most = false
 
bool m_rotate = false
 
amrex::Real z0_const {0.1}
 
amrex::Real surf_temp

Custom constant flux functional form.

-
319  {
-
320  MOENG = 0, ///< Moeng functional form
-
321  DONELAN, ///< Donelan functional form
-
322  CUSTOM ///< Custom constant flux functional form
-
323  };
+
327  {
+
328  MOENG = 0, ///< Moeng functional form
+
329  DONELAN, ///< Donelan functional form
+
330  CUSTOM ///< Custom constant flux functional form
+
331  };
@@ -318,12 +320,12 @@

MODIFIED_CHARNOCK  WAVE_COUPLED  -
331  {
-
332  CONSTANT = 0, ///< Constant z0
-
333  CHARNOCK,
-
334  MODIFIED_CHARNOCK,
-
335  WAVE_COUPLED
-
336  };
+
339  {
+
340  CONSTANT = 0, ///< Constant z0
+
341  CHARNOCK,
+
342  MODIFIED_CHARNOCK,
+
343  WAVE_COUPLED
+
344  };
@@ -353,11 +355,11 @@

SURFACE_TEMPERATURE 

Surface temperature specified.

-
325  {
-
326  ADIABATIC = 0,
-
327  HEAT_FLUX, ///< Heat-flux specified
-
328  SURFACE_TEMPERATURE ///< Surface temperature specified
-
329  };
+
333  {
+
334  ADIABATIC = 0,
+
335  HEAT_FLUX, ///< Heat-flux specified
+
336  SURFACE_TEMPERATURE ///< Surface temperature specified
+
337  };
@@ -499,212 +501,217 @@

70  amrex::Abort("Undefined MOST flux type!");
71  }
72 
-
73  // Get surface temperature
-
74  auto erf_st = pp.query("most.surf_temp", surf_temp);
-
75 
-
76  // Custom type user must specify the fluxes
-
77  if (flux_type == FluxCalcType::CUSTOM) {
-
78  theta_type = ThetaCalcType::HEAT_FLUX;
-
79  pp.query("most.ustar", custom_ustar);
-
80  pp.query("most.tstar", custom_tstar);
-
81  pp.query("most.qstar", custom_qstar);
-
82  if (custom_qstar != 0) {
-
83  AMREX_ASSERT_WITH_MESSAGE(use_moisture, "Specified custom MOST qv flux without moisture model!");
-
84  }
-
85  amrex::Print() << "Using specified ustar, tstar, qstar for MOST = "
-
86  << custom_ustar << " "
-
87  << custom_tstar << " "
-
88  << custom_qstar << std::endl;
-
89 
-
90  // Specify surface temperature or surface flux
-
91  } else {
-
92  if (erf_st) {
-
93  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
94  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
-
95  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
-
96  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
-
97  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
-
98  }
-
99  } else {
-
100  pp.query("most.surf_temp_flux", surf_temp_flux);
-
101  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
-
102  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
-
103  }
-
104  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
-
105  theta_type = ThetaCalcType::HEAT_FLUX;
-
106  } else {
-
107  theta_type = ThetaCalcType::ADIABATIC;
-
108  }
-
109  }
-
110  }
-
111 
-
112  // Specify how to compute the surface flux over land (if there is any)
-
113  std::string rough_land_string{"constant"};
-
114  pp.query("most.roughness_type_land", rough_land_string);
-
115  if (rough_land_string == "constant") {
-
116  rough_type_land = RoughCalcType::CONSTANT;
-
117  } else {
-
118  amrex::Abort("Undefined MOST roughness type for land!");
-
119  }
-
120 
-
121  // Specify how to compute the surface flux over sea (if there is any)
-
122  std::string rough_sea_string{"charnock"};
-
123  pp.query("most.roughness_type_sea", rough_sea_string);
-
124  if (rough_sea_string == "charnock") {
-
125  rough_type_sea = RoughCalcType::CHARNOCK;
-
126  pp.query("most.charnock_constant",cnk_a);
-
127  } else if (rough_sea_string == "modified_charnock") {
-
128  rough_type_sea = RoughCalcType::MODIFIED_CHARNOCK;
-
129  pp.query("most.modified_charnock_depth",depth);
-
130  } else if (rough_sea_string == "wave_coupled") {
-
131  rough_type_sea = RoughCalcType::WAVE_COUPLED;
-
132  } else {
-
133  amrex::Abort("Undefined MOST roughness type for sea!");
-
134  }
-
135 
-
136  // Size the MOST params for all levels
-
137  int nlevs = m_geom.size();
-
138  z_0.resize(nlevs);
-
139  u_star.resize(nlevs);
-
140  t_star.resize(nlevs);
-
141  q_star.resize(nlevs);
-
142  t_surf.resize(nlevs);
-
143  olen.resize(nlevs);
-
144 
-
145  // Get pointers to SST and LANDMASK data
-
146  m_sst_lev.resize(nlevs);
-
147  m_lmask_lev.resize(nlevs);
+
73  // Check if we do stress rotations for terrain
+
74  pp.query("most.terrain_rotate",m_rotate);
+
75  if (m_rotate) AMREX_ASSERT_WITH_MESSAGE((z_phys_nd[0].get()), "Stress rotations are only valid with terrain!");
+
76 
+
77  // Get surface temperature
+
78  auto erf_st = pp.query("most.surf_temp", surf_temp);
+
79 
+
80  // Custom type user must specify the fluxes
+
81  if (flux_type == FluxCalcType::CUSTOM) {
+
82  theta_type = ThetaCalcType::HEAT_FLUX;
+
83  pp.query("most.ustar", custom_ustar);
+
84  pp.query("most.tstar", custom_tstar);
+
85  pp.query("most.qstar", custom_qstar);
+
86  if (custom_qstar != 0) {
+
87  AMREX_ASSERT_WITH_MESSAGE(use_moisture, "Specified custom MOST qv flux without moisture model!");
+
88  }
+
89  amrex::Print() << "Using specified ustar, tstar, qstar for MOST = "
+
90  << custom_ustar << " "
+
91  << custom_tstar << " "
+
92  << custom_qstar << std::endl;
+
93 
+
94  // Specify surface temperature or surface flux
+
95  } else {
+
96  if (erf_st) {
+
97  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
+
98  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
+
99  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
+
100  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
+
101  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
102  }
+
103  } else {
+
104  pp.query("most.surf_temp_flux", surf_temp_flux);
+
105  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
+
106  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
107  }
+
108  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
+
109  theta_type = ThetaCalcType::HEAT_FLUX;
+
110  } else {
+
111  theta_type = ThetaCalcType::ADIABATIC;
+
112  }
+
113  }
+
114  }
+
115 
+
116  // Specify how to compute the surface flux over land (if there is any)
+
117  std::string rough_land_string{"constant"};
+
118  pp.query("most.roughness_type_land", rough_land_string);
+
119  if (rough_land_string == "constant") {
+
120  rough_type_land = RoughCalcType::CONSTANT;
+
121  } else {
+
122  amrex::Abort("Undefined MOST roughness type for land!");
+
123  }
+
124 
+
125  // Specify how to compute the surface flux over sea (if there is any)
+
126  std::string rough_sea_string{"charnock"};
+
127  pp.query("most.roughness_type_sea", rough_sea_string);
+
128  if (rough_sea_string == "charnock") {
+
129  rough_type_sea = RoughCalcType::CHARNOCK;
+
130  pp.query("most.charnock_constant",cnk_a);
+
131  } else if (rough_sea_string == "modified_charnock") {
+
132  rough_type_sea = RoughCalcType::MODIFIED_CHARNOCK;
+
133  pp.query("most.modified_charnock_depth",depth);
+
134  } else if (rough_sea_string == "wave_coupled") {
+
135  rough_type_sea = RoughCalcType::WAVE_COUPLED;
+
136  } else {
+
137  amrex::Abort("Undefined MOST roughness type for sea!");
+
138  }
+
139 
+
140  // Size the MOST params for all levels
+
141  int nlevs = m_geom.size();
+
142  z_0.resize(nlevs);
+
143  u_star.resize(nlevs);
+
144  t_star.resize(nlevs);
+
145  q_star.resize(nlevs);
+
146  t_surf.resize(nlevs);
+
147  olen.resize(nlevs);
148 
-
149  for (int lev(0); lev<nlevs; ++lev) {
-
150  int nt_tot_sst = sst_lev[lev].size();
-
151  m_sst_lev[lev].resize(nt_tot_sst);
-
152  for (int nt(0); nt<nt_tot_sst; ++nt) {
-
153  m_sst_lev[lev][nt] = sst_lev[lev][nt].get();
-
154  }
-
155  int nt_tot_lmask = lmask_lev[lev].size();
-
156  m_lmask_lev[lev].resize(nt_tot_lmask);
-
157  for (int nt(0); nt<nt_tot_lmask; ++nt) {
-
158  m_lmask_lev[lev][nt] = lmask_lev[lev][nt].get();
-
159  }
-
160  } // lev
-
161 
-
162  // Get pointers to LSM data and Fluxes
-
163  m_lsm_data_lev.resize(nlevs);
-
164  m_lsm_flux_lev.resize(nlevs);
-
165  for (int lev(0); lev<nlevs; ++lev) {
-
166  int nvar = lsm_data[lev].size();
-
167  m_lsm_data_lev[lev].resize(nvar);
-
168  m_lsm_flux_lev[lev].resize(nvar);
-
169  for (int n(0); n<nvar; ++n) {
-
170  m_lsm_data_lev[lev][n] = lsm_data[lev][n];
-
171  m_lsm_flux_lev[lev][n] = lsm_flux[lev][n];
-
172  }
-
173  } // lev
-
174 
-
175  // Get pointers to wave data
-
176  m_Hwave_lev.resize(nlevs);
-
177  m_Lwave_lev.resize(nlevs);
-
178  m_eddyDiffs_lev.resize(nlevs);
-
179  for (int lev(0); lev<nlevs; ++lev) {
-
180  m_Hwave_lev[lev] = Hwave[lev].get();
-
181  m_Lwave_lev[lev] = Lwave[lev].get();
-
182  m_eddyDiffs_lev[lev] = eddyDiffs[lev].get();
-
183  }
-
184 
-
185  for (int lev = 0; lev < nlevs; lev++) {
-
186  // Attributes for MFs and FABs
-
187  //--------------------------------------------------------
-
188  auto& mf = vars_old[lev][Vars::cons];
-
189  // Create a 2D ba, dm, & ghost cells
-
190  amrex::BoxArray ba = mf.boxArray();
-
191  amrex::BoxList bl2d = ba.boxList();
-
192  for (auto& b : bl2d) {
-
193  b.setRange(2,0);
-
194  }
-
195  amrex::BoxArray ba2d(std::move(bl2d));
-
196  const amrex::DistributionMapping& dm = mf.DistributionMap();
-
197  const int ncomp = 1;
-
198  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
-
199 
-
200  // Z0 heights FAB
-
201  //--------------------------------------------------------
-
202  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng);
-
203  bx.setSmall(2,0);
-
204  bx.setBig(2,0);
-
205  z_0[lev].resize(bx,1);
-
206  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
-
207 
-
208  // 2D MFs for U*, T*, T_surf
-
209  //--------------------------------------------------------
-
210  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
211  u_star[lev]->setVal(1.E34);
-
212 
-
213  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
214  t_star[lev]->setVal(1.E34);
-
215 
-
216  q_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
217  q_star[lev]->setVal(1.E34);
-
218 
-
219  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
220  olen[lev]->setVal(1.E34);
-
221 
-
222  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
223 
-
224  // TODO: Do we want lsm_data to have theta at 0 index always?
-
225  // Do we want an external enum struct for indexing?
-
226  if (m_sst_lev[lev][0] || m_lsm_data_lev[lev][0]) {
-
227  // Valid SST or LSM data; t_surf set before computing fluxes (avoids extended lambda capture)
-
228  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
229  } else if (erf_st) {
-
230  t_surf[lev]->setVal(surf_temp);
-
231  } else {
-
232  t_surf[lev]->setVal(0.0);
-
233  }
-
234  }// lev
-
235  }
+
149  // Get pointers to SST and LANDMASK data
+
150  m_sst_lev.resize(nlevs);
+
151  m_lmask_lev.resize(nlevs);
+
152 
+
153  for (int lev(0); lev<nlevs; ++lev) {
+
154  int nt_tot_sst = sst_lev[lev].size();
+
155  m_sst_lev[lev].resize(nt_tot_sst);
+
156  for (int nt(0); nt<nt_tot_sst; ++nt) {
+
157  m_sst_lev[lev][nt] = sst_lev[lev][nt].get();
+
158  }
+
159  int nt_tot_lmask = lmask_lev[lev].size();
+
160  m_lmask_lev[lev].resize(nt_tot_lmask);
+
161  for (int nt(0); nt<nt_tot_lmask; ++nt) {
+
162  m_lmask_lev[lev][nt] = lmask_lev[lev][nt].get();
+
163  }
+
164  } // lev
+
165 
+
166  // Get pointers to LSM data and Fluxes
+
167  m_lsm_data_lev.resize(nlevs);
+
168  m_lsm_flux_lev.resize(nlevs);
+
169  for (int lev(0); lev<nlevs; ++lev) {
+
170  int nvar = lsm_data[lev].size();
+
171  m_lsm_data_lev[lev].resize(nvar);
+
172  m_lsm_flux_lev[lev].resize(nvar);
+
173  for (int n(0); n<nvar; ++n) {
+
174  m_lsm_data_lev[lev][n] = lsm_data[lev][n];
+
175  m_lsm_flux_lev[lev][n] = lsm_flux[lev][n];
+
176  }
+
177  } // lev
+
178 
+
179  // Get pointers to wave data
+
180  m_Hwave_lev.resize(nlevs);
+
181  m_Lwave_lev.resize(nlevs);
+
182  m_eddyDiffs_lev.resize(nlevs);
+
183  for (int lev(0); lev<nlevs; ++lev) {
+
184  m_Hwave_lev[lev] = Hwave[lev].get();
+
185  m_Lwave_lev[lev] = Lwave[lev].get();
+
186  m_eddyDiffs_lev[lev] = eddyDiffs[lev].get();
+
187  }
+
188 
+
189  for (int lev = 0; lev < nlevs; lev++) {
+
190  // Attributes for MFs and FABs
+
191  //--------------------------------------------------------
+
192  auto& mf = vars_old[lev][Vars::cons];
+
193  // Create a 2D ba, dm, & ghost cells
+
194  amrex::BoxArray ba = mf.boxArray();
+
195  amrex::BoxList bl2d = ba.boxList();
+
196  for (auto& b : bl2d) {
+
197  b.setRange(2,0);
+
198  }
+
199  amrex::BoxArray ba2d(std::move(bl2d));
+
200  const amrex::DistributionMapping& dm = mf.DistributionMap();
+
201  const int ncomp = 1;
+
202  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
+
203 
+
204  // Z0 heights FAB
+
205  //--------------------------------------------------------
+
206  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng);
+
207  bx.setSmall(2,0);
+
208  bx.setBig(2,0);
+
209  z_0[lev].resize(bx,1);
+
210  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
+
211 
+
212  // 2D MFs for U*, T*, T_surf
+
213  //--------------------------------------------------------
+
214  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
215  u_star[lev]->setVal(1.E34);
+
216 
+
217  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
218  t_star[lev]->setVal(1.E34);
+
219 
+
220  q_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
221  q_star[lev]->setVal(1.E34);
+
222 
+
223  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
224  olen[lev]->setVal(1.E34);
+
225 
+
226  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
227 
+
228  // TODO: Do we want lsm_data to have theta at 0 index always?
+
229  // Do we want an external enum struct for indexing?
+
230  if (m_sst_lev[lev][0] || m_lsm_data_lev[lev][0]) {
+
231  // Valid SST or LSM data; t_surf set before computing fluxes (avoids extended lambda capture)
+
232  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
+
233  } else if (erf_st) {
+
234  t_surf[lev]->setVal(surf_temp);
+
235  } else {
+
236  t_surf[lev]->setVal(0.0);
+
237  }
+
238  }// lev
+
239  }
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: Microphysics_Utils.H:219
-
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ABLMost.H:356
-
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ABLMost.H:373
-
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ABLMost.H:363
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:364
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:358
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:357
-
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ABLMost.H:350
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:365
-
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ABLMost.H:352
-
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:354
-
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:348
-
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ABLMost.H:370
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:360
+
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ABLMost.H:365
+
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ABLMost.H:382
+
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ABLMost.H:372
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:373
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:367
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:366
+
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ABLMost.H:359
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:374
+
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ABLMost.H:361
+
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:363
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:357
+
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ABLMost.H:379
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:369
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
-
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ABLMost.H:355
-
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ABLMost.H:371
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:347
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:353
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:339
+
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ABLMost.H:364
+
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ABLMost.H:380
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:356
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:362
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:347
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::CUSTOM
@ CUSTOM
Custom constant flux functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ABLMost.H:369
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:349
-
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ABLMost.H:368
-
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ABLMost.H:340
-
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ABLMost.H:372
-
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ABLMost.H:341
-
ABLMost::use_moisture
bool use_moisture
Definition: ABLMost.H:344
-
ABLMost::m_exp_most
bool m_exp_most
Definition: ABLMost.H:345
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:362
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:361
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:346
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:338
-
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ABLMost.H:367
+
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ABLMost.H:378
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:358
+
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ABLMost.H:377
+
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ABLMost.H:348
+
ABLMost::m_rotate
bool m_rotate
Definition: ABLMost.H:354
+
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ABLMost.H:381
+
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ABLMost.H:349
+
ABLMost::use_moisture
bool use_moisture
Definition: ABLMost.H:352
+
ABLMost::m_exp_most
bool m_exp_most
Definition: ABLMost.H:353
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:371
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:370
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:355
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:346
+
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ABLMost.H:376
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
-
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ABLMost.H:351
+
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ABLMost.H:360
Vars::cons
@ cons
Definition: IndexDefines.H:99
Here is the call graph for this function:
@@ -807,12 +814,12 @@

176  });
177  }
178 }
-
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:87
+
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:90
- -

◆ compute_most_bcs() [1/2]

+ +

◆ compute_most_bcs() [1/2]

@@ -861,6 +868,12 @@

amrex::MultiFab *  heat_flux, + + + + amrex::MultiFab *  + qv_flux, + @@ -889,8 +902,8 @@

-

◆ compute_most_bcs() [2/2]

+ +

◆ compute_most_bcs() [2/2]

@@ -939,6 +952,12 @@

MultiFab *  heat_flux, + + + + MultiFab *  + qv_flux, + @@ -974,148 +993,151 @@

240 {
-
241  const int klo = 0;
-
242  const int icomp = 0;
-
243  for (MFIter mfi(*mfs[0]); mfi.isValid(); ++mfi)
-
244  {
-
245  // TODO: No LSM lateral ghost cells, should this change?
-
246  // Valid CC box
-
247  Box vbx = mfi.validbox(); vbx.makeSlab(2,klo-1);
-
248 
-
249  Box vbxx = surroundingNodes(vbx,0);
-
250  Box vbxy = surroundingNodes(vbx,1);
-
251 
-
252  // Expose for GPU
-
253  bool exp_most = m_exp_most;
-
254 
-
255  // Get field arrays
-
256  const auto cons_arr = mfs[Vars::cons]->array(mfi);
-
257  const auto velx_arr = mfs[Vars::xvel]->array(mfi);
-
258  const auto vely_arr = mfs[Vars::yvel]->array(mfi);
-
259 
-
260  auto t13_arr = (m_exp_most) ? xzmom_flux->array(mfi) : Array4<Real>{};
-
261  auto t23_arr = (m_exp_most) ? yzmom_flux->array(mfi) : Array4<Real>{};
-
262  auto t31_arr = (zxmom_flux && m_exp_most) ? zxmom_flux->array(mfi) : Array4<Real>{};
-
263  auto t32_arr = (zymom_flux && m_exp_most) ? zymom_flux->array(mfi) : Array4<Real>{};
-
264  auto hfx_arr = (m_exp_most) ? heat_flux->array(mfi) : Array4<Real>{};
-
265 
-
266  const auto eta_arr = m_eddyDiffs_lev[lev]->array(mfi);
-
267 
-
268  const auto zphys_arr = (z_phys) ? z_phys->const_array(mfi) : Array4<const Real>{};
-
269 
-
270  // Get average arrays
-
271  const auto *const u_mean = m_ma.get_average(lev,0);
-
272  const auto *const v_mean = m_ma.get_average(lev,1);
-
273  const auto *const t_mean = m_ma.get_average(lev,2);
-
274  const auto *const q_mean = m_ma.get_average(lev,3);
-
275  const auto *const u_mag_mean = m_ma.get_average(lev,4);
-
276 
-
277  const auto um_arr = u_mean->array(mfi);
-
278  const auto vm_arr = v_mean->array(mfi);
-
279  const auto tm_arr = t_mean->array(mfi);
-
280  const auto qm_arr = q_mean->array(mfi);
-
281  const auto umm_arr = u_mag_mean->array(mfi);
-
282 
-
283  // Get derived arrays
-
284  const auto u_star_arr = u_star[lev]->array(mfi);
-
285  const auto t_star_arr = t_star[lev]->array(mfi);
-
286  const auto q_star_arr = q_star[lev]->array(mfi);
-
287  const auto t_surf_arr = t_surf[lev]->array(mfi);
-
288 
-
289  // Get LSM fluxes
-
290  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
-
291  Array4<int> {};
-
292  auto lsm_flux_arr = (m_lsm_flux_lev[lev][0]) ? m_lsm_flux_lev[lev][0]->array(mfi) :
-
293  Array4<Real> {};
-
294 
-
295  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx)
-
296  {
-
297  const Box& bx = (*mfs[var_idx])[mfi].box();
-
298  auto dest_arr = (*mfs[var_idx])[mfi].array();
-
299 
-
300  if (var_idx == Vars::cons) {
-
301  Box b2d = bx;
-
302  b2d.setBig(2,klo-1);
-
303  int n = RhoTheta_comp;
-
304  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
305  {
-
306  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
-
307  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
-
308  Real Tflux = flux_comp.compute_t_flux(i, j, k, n, icomp, dz, dz1, exp_most, eta_arr,
-
309  cons_arr, velx_arr, vely_arr,
-
310  umm_arr, tm_arr, u_star_arr, t_star_arr, t_surf_arr,
-
311  dest_arr);
-
312 
-
313 
-
314  // TODO: make sure not to double-count surface heat flux if using a LSM
-
315  int is_land = (lmask_arr) ? lmask_arr(i,j,klo) : 1;
-
316  if (is_land && lsm_flux_arr && vbx.contains(i,j,k)) {
-
317  lsm_flux_arr(i,j,klo) = Tflux;
-
318  }
-
319  else if ((k == klo-1) && vbx.contains(i,j,k) && exp_most) {
-
320  hfx_arr(i,j,klo) = Tflux;
+
242 {
+
243  const int klo = 0;
+
244  const int icomp = 0;
+
245  for (MFIter mfi(*mfs[0]); mfi.isValid(); ++mfi)
+
246  {
+
247  // TODO: No LSM lateral ghost cells, should this change?
+
248  // Valid CC box
+
249  Box vbx = mfi.validbox(); vbx.makeSlab(2,klo-1);
+
250 
+
251  Box vbxx = surroundingNodes(vbx,0);
+
252  Box vbxy = surroundingNodes(vbx,1);
+
253 
+
254  // Expose for GPU
+
255  bool exp_most = m_exp_most;
+
256 
+
257  // Get field arrays
+
258  const auto cons_arr = mfs[Vars::cons]->array(mfi);
+
259  const auto velx_arr = mfs[Vars::xvel]->array(mfi);
+
260  const auto vely_arr = mfs[Vars::yvel]->array(mfi);
+
261 
+
262  auto t13_arr = (m_exp_most) ? xzmom_flux->array(mfi) : Array4<Real>{};
+
263  auto t23_arr = (m_exp_most) ? yzmom_flux->array(mfi) : Array4<Real>{};
+
264  auto t31_arr = (zxmom_flux && m_exp_most) ? zxmom_flux->array(mfi) : Array4<Real>{};
+
265  auto t32_arr = (zymom_flux && m_exp_most) ? zymom_flux->array(mfi) : Array4<Real>{};
+
266  auto hfx_arr = (m_exp_most) ? heat_flux->array(mfi) : Array4<Real>{};
+
267  auto qfx_arr = (m_exp_most && qv_flux) ? qv_flux->array(mfi) : Array4<Real>{};
+
268 
+
269  const auto eta_arr = m_eddyDiffs_lev[lev]->array(mfi);
+
270 
+
271  const auto zphys_arr = (z_phys) ? z_phys->const_array(mfi) : Array4<const Real>{};
+
272 
+
273  // Get average arrays
+
274  const auto *const u_mean = m_ma.get_average(lev,0);
+
275  const auto *const v_mean = m_ma.get_average(lev,1);
+
276  const auto *const t_mean = m_ma.get_average(lev,2);
+
277  const auto *const q_mean = m_ma.get_average(lev,3);
+
278  const auto *const u_mag_mean = m_ma.get_average(lev,4);
+
279 
+
280  const auto um_arr = u_mean->array(mfi);
+
281  const auto vm_arr = v_mean->array(mfi);
+
282  const auto tm_arr = t_mean->array(mfi);
+
283  const auto qm_arr = q_mean->array(mfi);
+
284  const auto umm_arr = u_mag_mean->array(mfi);
+
285 
+
286  // Get derived arrays
+
287  const auto u_star_arr = u_star[lev]->array(mfi);
+
288  const auto t_star_arr = t_star[lev]->array(mfi);
+
289  const auto q_star_arr = q_star[lev]->array(mfi);
+
290  const auto t_surf_arr = t_surf[lev]->array(mfi);
+
291 
+
292  // Get LSM fluxes
+
293  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
+
294  Array4<int> {};
+
295  auto lsm_flux_arr = (m_lsm_flux_lev[lev][0]) ? m_lsm_flux_lev[lev][0]->array(mfi) :
+
296  Array4<Real> {};
+
297 
+
298  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx)
+
299  {
+
300  const Box& bx = (*mfs[var_idx])[mfi].box();
+
301  auto dest_arr = (*mfs[var_idx])[mfi].array();
+
302 
+
303  if (var_idx == Vars::cons) {
+
304  Box b2d = bx;
+
305  b2d.setBig(2,klo-1);
+
306  int n = RhoTheta_comp;
+
307  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
308  {
+
309  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
+
310  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
+
311  Real Tflux = flux_comp.compute_t_flux(i, j, k, n, icomp, dz, dz1, exp_most, eta_arr,
+
312  cons_arr, velx_arr, vely_arr,
+
313  umm_arr, tm_arr, u_star_arr, t_star_arr, t_surf_arr,
+
314  dest_arr);
+
315 
+
316 
+
317  // TODO: make sure not to double-count surface heat flux if using a LSM
+
318  int is_land = (lmask_arr) ? lmask_arr(i,j,klo) : 1;
+
319  if (is_land && lsm_flux_arr && vbx.contains(i,j,k)) {
+
320  lsm_flux_arr(i,j,klo) = Tflux;
321  }
-
322  });
-
323 
-
324  // TODO: Generalize MOST q flux with MOENG & DONELAN flux types
-
325  if ((flux_type == FluxCalcType::CUSTOM) && use_moisture) {
-
326  n = RhoQ1_comp;
-
327  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
328  {
-
329  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
-
330  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
-
331  Real Qflux = flux_comp.compute_q_flux(i, j, k, n, icomp, dz, dz1, exp_most, eta_arr,
-
332  cons_arr, velx_arr, vely_arr,
-
333  umm_arr, qm_arr, u_star_arr, q_star_arr, t_surf_arr,
-
334  dest_arr);
-
335  amrex::ignore_unused(Qflux);
-
336  });
-
337  }
-
338 
-
339  } else if (var_idx == Vars::xvel) {
-
340 
-
341  Box xb2d = surroundingNodes(bx,0);
-
342  xb2d.setBig(2,klo-1);
+
322  else if ((k == klo-1) && vbx.contains(i,j,k) && exp_most) {
+
323  hfx_arr(i,j,klo) = Tflux;
+
324  }
+
325  });
+
326 
+
327  // TODO: Generalize MOST q flux with MOENG & DONELAN flux types
+
328  if ((flux_type == FluxCalcType::CUSTOM) && use_moisture) {
+
329  n = RhoQ1_comp;
+
330  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
331  {
+
332  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
+
333  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
+
334  Real Qflux = flux_comp.compute_q_flux(i, j, k, n, icomp, dz, dz1, exp_most, eta_arr,
+
335  cons_arr, velx_arr, vely_arr,
+
336  umm_arr, qm_arr, u_star_arr, q_star_arr, t_surf_arr,
+
337  dest_arr);
+
338  if ((k == klo-1) && vbx.contains(i,j,k) && exp_most) {
+
339  qfx_arr(i,j,klo) = Qflux;
+
340  }
+
341  });
+
342  }
343 
-
344  ParallelFor(xb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
345  {
-
346  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
-
347  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
-
348  Real stressx = flux_comp.compute_u_flux(i, j, k, icomp, dz, dz1, exp_most, eta_arr,
-
349  cons_arr, velx_arr, vely_arr,
-
350  umm_arr, um_arr, u_star_arr,
-
351  dest_arr);
-
352  if ((k == klo-1) && vbxx.contains(i,j,k) && exp_most) {
-
353  t13_arr(i,j,klo) = -stressx;
-
354  if (t31_arr) t31_arr(i,j,klo) = -stressx;
-
355  }
-
356  amrex::ignore_unused(stressx);
-
357  });
-
358 
-
359  } else if (var_idx == Vars::yvel) {
-
360 
-
361  Box yb2d = surroundingNodes(bx,1);
-
362  yb2d.setBig(2,klo-1);
+
344  } else if (var_idx == Vars::xvel) {
+
345 
+
346  Box xb2d = surroundingNodes(bx,0);
+
347  xb2d.setBig(2,klo-1);
+
348 
+
349  ParallelFor(xb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
350  {
+
351  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
+
352  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
+
353  Real stressx = flux_comp.compute_u_flux(i, j, k, icomp, dz, dz1, exp_most, eta_arr,
+
354  cons_arr, velx_arr, vely_arr,
+
355  umm_arr, um_arr, u_star_arr,
+
356  dest_arr);
+
357  if ((k == klo-1) && vbxx.contains(i,j,k) && exp_most) {
+
358  t13_arr(i,j,klo) = -stressx;
+
359  if (t31_arr) t31_arr(i,j,klo) = -stressx;
+
360  }
+
361  amrex::ignore_unused(stressx);
+
362  });
363 
-
364  ParallelFor(yb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
365  {
-
366  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
-
367  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
-
368  Real stressy = flux_comp.compute_v_flux(i, j, k, icomp, dz, dz1, exp_most, eta_arr,
-
369  cons_arr, velx_arr, vely_arr,
-
370  umm_arr, vm_arr, u_star_arr,
-
371  dest_arr);
-
372  if ((k == klo-1) && vbxy.contains(i,j,k) && exp_most) {
-
373  t23_arr(i,j,klo) = -stressy;
-
374  if (t32_arr) t32_arr(i,j,klo) = -stressy;
-
375  }
-
376  amrex::ignore_unused(stressy);
-
377  });
-
378  }
-
379  } // var_idx
-
380  } // mfiter
-
381 }
+
364  } else if (var_idx == Vars::yvel) {
+
365 
+
366  Box yb2d = surroundingNodes(bx,1);
+
367  yb2d.setBig(2,klo-1);
+
368 
+
369  ParallelFor(yb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
370  {
+
371  Real dz = (zphys_arr) ? ( zphys_arr(i,j,klo ) - zphys_arr(i,j,klo-1) ) : dz_no_terrain;
+
372  Real dz1 = (zphys_arr) ? ( zphys_arr(i,j,klo+1) - zphys_arr(i,j,klo ) ) : dz_no_terrain;
+
373  Real stressy = flux_comp.compute_v_flux(i, j, k, icomp, dz, dz1, exp_most, eta_arr,
+
374  cons_arr, velx_arr, vely_arr,
+
375  umm_arr, vm_arr, u_star_arr,
+
376  dest_arr);
+
377  if ((k == klo-1) && vbxy.contains(i,j,k) && exp_most) {
+
378  t23_arr(i,j,klo) = -stressy;
+
379  if (t32_arr) t32_arr(i,j,klo) = -stressy;
+
380  }
+
381  amrex::ignore_unused(stressy);
+
382  });
+
383  }
+
384  } // var_idx
+
385  } // mfiter
+
386 }
RhoTheta_comp
#define RhoTheta_comp
Definition: IndexDefines.H:13
RhoQ1_comp
#define RhoQ1_comp
Definition: IndexDefines.H:17
Vars::xvel
@ xvel
Definition: IndexDefines.H:100
@@ -1139,36 +1161,36 @@

-
420 {
-
421  for (MFIter mfi(*t_surf[lev]); mfi.isValid(); ++mfi)
-
422  {
-
423  Box gtbx = mfi.growntilebox();
-
424 
-
425  // TODO: LSM does not carry lateral ghost cells.
-
426  // This copies the valid box into the ghost cells.
-
427  // Fillboundary is called after this to pick up the
-
428  // interior ghost and periodic directions. Is there
-
429  // a better approach?
-
430  Box vbx = mfi.validbox();
-
431  int i_lo = vbx.smallEnd(0); int i_hi = vbx.bigEnd(0);
-
432  int j_lo = vbx.smallEnd(1); int j_hi = vbx.bigEnd(1);
-
433 
-
434  auto t_surf_arr = t_surf[lev]->array(mfi);
-
435  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
-
436  Array4<int> {};
-
437  const auto lsm_arr = m_lsm_data_lev[lev][0]->const_array(mfi);
+
425 {
+
426  for (MFIter mfi(*t_surf[lev]); mfi.isValid(); ++mfi)
+
427  {
+
428  Box gtbx = mfi.growntilebox();
+
429 
+
430  // TODO: LSM does not carry lateral ghost cells.
+
431  // This copies the valid box into the ghost cells.
+
432  // Fillboundary is called after this to pick up the
+
433  // interior ghost and periodic directions. Is there
+
434  // a better approach?
+
435  Box vbx = mfi.validbox();
+
436  int i_lo = vbx.smallEnd(0); int i_hi = vbx.bigEnd(0);
+
437  int j_lo = vbx.smallEnd(1); int j_hi = vbx.bigEnd(1);
438 
-
439  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
440  {
-
441  int is_land = (lmask_arr) ? lmask_arr(i,j,k) : 1;
-
442  if (is_land) {
-
443  int li = amrex::min(amrex::max(i, i_lo), i_hi);
-
444  int lj = amrex::min(amrex::max(j, j_lo), j_hi);
-
445  t_surf_arr(i,j,k) = lsm_arr(li,lj,k);
-
446  }
-
447  });
-
448  }
-
449 }
+
439  auto t_surf_arr = t_surf[lev]->array(mfi);
+
440  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
+
441  Array4<int> {};
+
442  const auto lsm_arr = m_lsm_data_lev[lev][0]->const_array(mfi);
+
443 
+
444  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
445  {
+
446  int is_land = (lmask_arr) ? lmask_arr(i,j,k) : 1;
+
447  if (is_land) {
+
448  int li = amrex::min(amrex::max(i, i_lo), i_hi);
+
449  int lj = amrex::min(amrex::max(j, j_lo), j_hi);
+
450  t_surf_arr(i,j,k) = lsm_arr(li,lj,k);
+
451  }
+
452  });
+
453  }
+
454 }

@@ -1205,7 +1227,7 @@

-
308 { return m_ma.get_average(lev,comp); }
+
314 { return m_ma.get_average(lev,comp); }
Here is the call graph for this function:
@@ -1241,7 +1263,7 @@

-
305 { return olen[lev].get(); }
+
311 { return olen[lev].get(); }

@@ -1268,7 +1290,7 @@

-
302 { return t_star[lev].get(); }
+
308 { return t_star[lev].get(); }

@@ -1295,7 +1317,7 @@

-
311 { return t_surf[lev].get(); }
+
317 { return t_surf[lev].get(); }

@@ -1322,7 +1344,7 @@

-
299 { return u_star[lev].get(); }
+
305 { return u_star[lev].get(); }

@@ -1349,7 +1371,7 @@

-
317 {return &z_0[lev];}
+
323 {return &z_0[lev];}

@@ -1375,8 +1397,8 @@

-
314 {return m_ma.get_zref();}
-
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:90
+
320 {return m_ma.get_zref();}
+
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:93
Here is the call graph for this function:
@@ -1389,8 +1411,8 @@

-

◆ impose_most_bcs()

+ +

◆ impose_most_bcs()

@@ -1437,6 +1459,12 @@

amrex::MultiFab *  heat_flux, + + + + amrex::MultiFab *  + qv_flux, + @@ -1459,34 +1487,34 @@

195 {
-
196  const int klo = 0;
-
197  if (flux_type == FluxCalcType::MOENG) {
-
198  moeng_flux flux_comp(klo);
-
199  compute_most_bcs(lev, mfs,
-
200  xzmom_flux, zxmom_flux,
-
201  yzmom_flux, zymom_flux,
-
202  heat_flux,
-
203  z_phys, m_geom[lev].CellSize(2), flux_comp);
-
204  } else if (flux_type == FluxCalcType::DONELAN) {
-
205  donelan_flux flux_comp(klo);
-
206  compute_most_bcs(lev, mfs,
-
207  xzmom_flux, zxmom_flux,
-
208  yzmom_flux, zymom_flux,
-
209  heat_flux,
-
210  z_phys, m_geom[lev].CellSize(2), flux_comp);
-
211  } else {
-
212  custom_flux flux_comp(klo);
-
213  compute_most_bcs(lev, mfs,
-
214  xzmom_flux, zxmom_flux,
-
215  yzmom_flux, zymom_flux,
-
216  heat_flux,
-
217  z_phys, m_geom[lev].CellSize(2), flux_comp);
-
218  }
-
219 }
-
ABLMost::compute_most_bcs
void compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
-
custom_flux
Definition: MOSTStress.H:1387
-
donelan_flux
Definition: MOSTStress.H:1116
+
196 {
+
197  const int klo = 0;
+
198  if (flux_type == FluxCalcType::MOENG) {
+
199  moeng_flux flux_comp(klo);
+
200  compute_most_bcs(lev, mfs,
+
201  xzmom_flux, zxmom_flux,
+
202  yzmom_flux, zymom_flux,
+
203  heat_flux, qv_flux,
+
204  z_phys, m_geom[lev].CellSize(2), flux_comp);
+
205  } else if (flux_type == FluxCalcType::DONELAN) {
+
206  donelan_flux flux_comp(klo);
+
207  compute_most_bcs(lev, mfs,
+
208  xzmom_flux, zxmom_flux,
+
209  yzmom_flux, zymom_flux,
+
210  heat_flux, qv_flux,
+
211  z_phys, m_geom[lev].CellSize(2), flux_comp);
+
212  } else {
+
213  custom_flux flux_comp(klo);
+
214  compute_most_bcs(lev, mfs,
+
215  xzmom_flux, zxmom_flux,
+
216  yzmom_flux, zymom_flux,
+
217  heat_flux, qv_flux,
+
218  z_phys, m_geom[lev].CellSize(2), flux_comp);
+
219  }
+
220 }
+
ABLMost::compute_most_bcs
void compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *heat_flux, amrex::MultiFab *qv_flux, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
+
custom_flux
Definition: MOSTStress.H:1397
+
donelan_flux
Definition: MOSTStress.H:1121
moeng_flux
Definition: MOSTStress.H:826

@@ -1516,37 +1544,37 @@

-
386 {
-
387  // Time interpolation
-
388  Real dT = m_bdy_time_interval;
-
389  Real time_since_start = time - m_start_bdy_time;
-
390  int n_time = static_cast<int>( time_since_start / dT);
-
391  Real alpha = (time_since_start - n_time * dT) / dT;
-
392  AMREX_ALWAYS_ASSERT( alpha >= 0. && alpha <= 1.0);
-
393  Real oma = 1.0 - alpha;
-
394  AMREX_ALWAYS_ASSERT( (n_time >= 0) && (n_time < (m_sst_lev[lev].size()-1)));
-
395 
-
396  // Populate t_surf
-
397  for (MFIter mfi(*t_surf[lev]); mfi.isValid(); ++mfi)
-
398  {
-
399  Box gtbx = mfi.growntilebox();
+
391 {
+
392  // Time interpolation
+
393  Real dT = m_bdy_time_interval;
+
394  Real time_since_start = time - m_start_bdy_time;
+
395  int n_time = static_cast<int>( time_since_start / dT);
+
396  Real alpha = (time_since_start - n_time * dT) / dT;
+
397  AMREX_ALWAYS_ASSERT( alpha >= 0. && alpha <= 1.0);
+
398  Real oma = 1.0 - alpha;
+
399  AMREX_ALWAYS_ASSERT( (n_time >= 0) && (n_time < (m_sst_lev[lev].size()-1)));
400 
-
401  auto t_surf_arr = t_surf[lev]->array(mfi);
-
402  const auto sst_hi_arr = m_sst_lev[lev][n_time+1]->const_array(mfi);
-
403  const auto sst_lo_arr = m_sst_lev[lev][n_time ]->const_array(mfi);
-
404  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
-
405  Array4<int> {};
-
406 
-
407  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
408  {
-
409  int is_land = (lmask_arr) ? lmask_arr(i,j,k) : 1;
-
410  if (!is_land) {
-
411  t_surf_arr(i,j,k) = oma * sst_lo_arr(i,j,k)
-
412  + alpha * sst_hi_arr(i,j,k);
-
413  }
-
414  });
-
415  }
-
416 }
+
401  // Populate t_surf
+
402  for (MFIter mfi(*t_surf[lev]); mfi.isValid(); ++mfi)
+
403  {
+
404  Box gtbx = mfi.growntilebox();
+
405 
+
406  auto t_surf_arr = t_surf[lev]->array(mfi);
+
407  const auto sst_hi_arr = m_sst_lev[lev][n_time+1]->const_array(mfi);
+
408  const auto sst_lo_arr = m_sst_lev[lev][n_time ]->const_array(mfi);
+
409  auto lmask_arr = (m_lmask_lev[lev][0]) ? m_lmask_lev[lev][0]->array(mfi) :
+
410  Array4<int> {};
+
411 
+
412  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
413  {
+
414  int is_land = (lmask_arr) ? lmask_arr(i,j,k) : 1;
+
415  if (!is_land) {
+
416  t_surf_arr(i,j,k) = oma * sst_lo_arr(i,j,k)
+
417  + alpha * sst_hi_arr(i,j,k);
+
418  }
+
419  });
+
420  }
+
421 }

@@ -1699,10 +1727,10 @@

123  }

124 }
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)
Definition: ABLMost.cpp:135
-
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ABLMost.cpp:384
-
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ABLMost.H:276
-
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ABLMost.cpp:419
-
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: MOSTAverage.cpp:540
+
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ABLMost.cpp:389
+
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ABLMost.H:282
+
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ABLMost.cpp:424
+
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: MOSTAverage.cpp:628
adiabatic_charnock
Definition: MOSTStress.H:111
adiabatic_mod_charnock
Definition: MOSTStress.H:166
adiabatic_wave_coupled
Definition: MOSTStress.H:222
@@ -1763,8 +1791,8 @@

-
296  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim); }
-
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:181
+
302  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim); }
+
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
Definition: MOSTAverage.cpp:209
Here is the call graph for this function:
@@ -1800,19 +1828,19 @@

-
277  {
-
278  if (surf_heating_rate != 0) {
-
279  int nlevs = m_geom.size();
-
280  for (int lev = 0; lev < nlevs; lev++)
-
281  {
-
282  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
-
283  amrex::Print() << "Surface temp at t=" << time
-
284  << ": "
-
285  << surf_temp + surf_heating_rate*time
-
286  << std::endl;
-
287  }
-
288  }
-
289  }
+
283  {
+
284  if (surf_heating_rate != 0) {
+
285  int nlevs = m_geom.size();
+
286  for (int lev = 0; lev < nlevs; lev++)
+
287  {
+
288  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
+
289  amrex::Print() << "Surface temp at t=" << time
+
290  << ": "
+
291  << surf_temp + surf_heating_rate*time
+
292  << std::endl;
+
293  }
+
294  }
+
295  }

@@ -2187,6 +2215,30 @@

Referenced by get_mac_avg(), get_zref(), and update_mac_ptrs().

+

+

+ +

◆ m_rotate

+ +
+
+ + + + + +
+ + + + +
bool ABLMost::m_rotate = false
+ 		+private
+
+ +

Referenced by ABLMost().

+
diff --git a/classABLMost.js b/classABLMost.js index 0be9d584ae..84af2e4ae5 100644 --- a/classABLMost.js +++ b/classABLMost.js @@ -18,8 +18,8 @@ var classABLMost = ] ], [ "ABLMost", "classABLMost.html#a4ee786860369e5a42ba353308590b372", null ], [ "compute_fluxes", "classABLMost.html#a829339fc8e70a5dff8b7c85f3c2e4138", null ], - [ "compute_most_bcs", "classABLMost.html#a67df60526193cba93df934a540f7a258", null ], - [ "compute_most_bcs", "classABLMost.html#a0c33b98848bdb3beb8249d5b60ec1a83", null ], + [ "compute_most_bcs", "classABLMost.html#afb930118bc66bba7376f0fe2abd85be3", null ], + [ "compute_most_bcs", "classABLMost.html#a64b906be4c2e1328177633f682fab5dd", null ], [ "get_lsm_tsurf", "classABLMost.html#ae28fd8a21f4b514875c24fe4b8e85081", null ], [ "get_mac_avg", "classABLMost.html#af26cdc6b8c162c14b2db32eb395f0565", null ], [ "get_olen", "classABLMost.html#aef7480dbb43cafff3be93a95240c1ec3", null ], @@ -28,7 +28,7 @@ var classABLMost = [ "get_u_star", "classABLMost.html#a0890b6ae8c80d8888effa040af808df0", null ], [ "get_z0", "classABLMost.html#a626a97f944cb297c966a2ff7ce0bad97", null ], [ "get_zref", "classABLMost.html#ae638411093a2d3cc6cc525d4d7efa7ed", null ], - [ "impose_most_bcs", "classABLMost.html#a8e0510d69090549d147c9ebf31f24e5a", null ], + [ "impose_most_bcs", "classABLMost.html#ab3ac1c161450930085ef74208b7f3dcb", null ], [ "time_interp_sst", "classABLMost.html#aaeef06eb7d0ab7e3d100e583337121cc", null ], [ "update_fluxes", "classABLMost.html#af82057d4fbaaf1d8347cf18c7efd7b53", null ], [ "update_mac_ptrs", "classABLMost.html#a6a3e64fcdbe709a947131d31cd0e347b", null ], @@ -49,6 +49,7 @@ var classABLMost = [ "m_lsm_flux_lev", "classABLMost.html#a422336bc908d29f98dafb3b745b4f060", null ], [ "m_Lwave_lev", "classABLMost.html#ab12af4a41dbc189d69850a81447434f7", null ], [ "m_ma", "classABLMost.html#a466bfcda8ae4337d9c8781ab28e3f6fe", null ], + [ "m_rotate", "classABLMost.html#ab107efa0b6bdf80ee44d232919f6a7ad", null ], [ "m_sst_lev", "classABLMost.html#ad8f1957bba407e17edb0a84ace515cde", null ], [ "m_start_bdy_time", "classABLMost.html#a4fb97b28e44e9ff6930f18083923343a", null ], [ "olen", "classABLMost.html#a0d6aa5a113a45ae1e56c0284241cfd01", null ], diff --git a/classABLMost__coll__graph.map b/classABLMost__coll__graph.map index 33275bcbe4..10fed01373 100644 --- a/classABLMost__coll__graph.map +++ b/classABLMost__coll__graph.map @@ -1,23 +1,23 @@ - + - + - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + diff --git a/classABLMost__coll__graph.md5 b/classABLMost__coll__graph.md5 index 4b3b57b0fc..2a8437fca4 100644 --- a/classABLMost__coll__graph.md5 +++ b/classABLMost__coll__graph.md5 @@ -1 +1 @@ -51a92484cf447ef77eb689ee8cc0d465 \ No newline at end of file +1dff4da35b8c746af168fd89a90dc174 \ No newline at end of file diff --git a/classABLMost__coll__graph.png b/classABLMost__coll__graph.png index 6f01352c3e..b462aea58b 100644 Binary files a/classABLMost__coll__graph.png and b/classABLMost__coll__graph.png differ diff --git a/classERF-members.html b/classERF-members.html index b0a228bd47..e0475f29e6 100644 --- a/classERF-members.html +++ b/classERF-members.html @@ -211,7 +211,7 @@ init_Dirichlet_bc_data(const std::string input_file)ERFprivate init_from_hse(int lev)ERF init_from_input_sounding(int lev)ERF - init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &geom, const amrex::Vector< amrex::Real > &zlev_stag)ERFprivate + init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &lgeom, const amrex::Vector< amrex::Real > &zlev_stag)ERFprivate init_only(int lev, amrex::Real time)ERF init_shrinkERFprivatestatic init_sounding_idealERFprivatestatic diff --git a/classERF.html b/classERF.html index eb09a81777..eec2d3954b 100644 --- a/classERF.html +++ b/classERF.html @@ -368,8 +368,8 @@   void fill_rhs (amrex::MultiFab &rhs_mf, const amrex::MultiFab &state_mf, amrex::Real time, const amrex::Geometry &geom)   -void init_geo_wind_profile (const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &geom, const amrex::Vector< amrex::Real > &zlev_stag) -  +void init_geo_wind_profile (const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &lgeom, const amrex::Vector< amrex::Real > &zlev_stag) +  void refinement_criteria_setup ()   AMREX_FORCE_INLINE amrex::YAFluxRegister * getAdvFluxReg (int lev) @@ -5366,95 +5366,95 @@

-
579 {
-
580  // Impose bc's at domain boundaries
-
581  for (int lev = 0; lev <= finest_level; ++lev)
-
582  {
-
583  Box domain(Geom(lev).Domain());
-
584 
-
585  int ihi = domain.bigEnd(0);
-
586  int jhi = domain.bigEnd(1);
-
587  int khi = domain.bigEnd(2);
-
588 
-
589  // Impose periodicity first
-
590  mf_cc_vel[lev].FillBoundary(geom[lev].periodicity());
-
591 
-
592  for (MFIter mfi(mf_cc_vel[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
-
593  {
-
594  // Note that we don't fill corners here -- only the cells that share a face
-
595  // with interior cells -- this is all that is needed to calculate vorticity
-
596  const Box& bx = mfi.tilebox();
-
597  const Array4<Real>& vel_arr = mf_cc_vel[lev].array(mfi);
-
598 
-
599  if (!Geom(lev).isPeriodic(0)) {
-
600  // Low-x side
-
601  if (bx.smallEnd(0) <= domain.smallEnd(0)) {
-
602  Real mult = (phys_bc_type[0] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
603  ParallelFor(makeSlab(bx,0,0), [=] AMREX_GPU_DEVICE(int , int j, int k) noexcept
-
604  {
-
605  vel_arr(-1,j,k,1) = mult*vel_arr(0,j,k,1); // v
-
606  vel_arr(-1,j,k,2) = mult*vel_arr(0,j,k,2); // w
-
607  });
-
608  }
-
609 
-
610  // High-x side
-
611  if (bx.bigEnd(0) >= domain.bigEnd(0)) {
-
612  Real mult = (phys_bc_type[3] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
613  ParallelFor(makeSlab(bx,0,0), [=] AMREX_GPU_DEVICE(int , int j, int k) noexcept
-
614  {
-
615  vel_arr(ihi+1,j,k,1) = mult*vel_arr(ihi,j,k,1); // v
-
616  vel_arr(ihi+1,j,k,2) = mult*vel_arr(ihi,j,k,2); // w
-
617  });
-
618  }
-
619  } // !periodic
-
620 
-
621  if (!Geom(lev).isPeriodic(1)) {
-
622  // Low-y side
-
623  if (bx.smallEnd(1) <= domain.smallEnd(1)) {
-
624  Real mult = (phys_bc_type[1] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
625  ParallelFor(makeSlab(bx,1,0), [=] AMREX_GPU_DEVICE(int i, int , int k) noexcept
-
626  {
-
627  vel_arr(i,-1,k,0) = mult*vel_arr(i,0,k,0); // u
-
628  vel_arr(i,-1,k,2) = mult*vel_arr(i,0,k,2); // w
-
629  });
-
630  }
-
631 
-
632  // High-y side
-
633  if (bx.bigEnd(1) >= domain.bigEnd(1)) {
-
634  Real mult = (phys_bc_type[4] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
635  ParallelFor(makeSlab(bx,1,0), [=] AMREX_GPU_DEVICE(int i, int , int k) noexcept
-
636  {
-
637  vel_arr(i,jhi+1,k,0) = mult*vel_arr(i,jhi,k,0); // u
-
638  vel_arr(i,jhi+1,k,2) = mult*-vel_arr(i,jhi,k,2); // w
-
639  });
-
640  }
-
641  } // !periodic
-
642 
-
643  if (!Geom(lev).isPeriodic(2)) {
-
644  // Low-z side
-
645  if (bx.smallEnd(2) <= domain.smallEnd(2)) {
-
646  Real mult = (phys_bc_type[2] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
647  ParallelFor(makeSlab(bx,2,0), [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
-
648  {
-
649  vel_arr(i,j,-1,0) = mult*vel_arr(i,j,0,0); // u
-
650  vel_arr(i,j,-1,1) = mult*vel_arr(i,j,0,1); // v
-
651  });
-
652  }
-
653 
-
654  // High-z side
-
655  if (bx.bigEnd(2) >= domain.bigEnd(2)) {
-
656  Real mult = (phys_bc_type[5] == ERF_BC::no_slip_wall) ? -1. : 1.;
-
657  ParallelFor(makeSlab(bx,2,0), [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
-
658  {
-
659  vel_arr(i,j,khi+1,0) = mult*vel_arr(i,j,khi,0); // u
-
660  vel_arr(i,j,khi+1,1) = mult*vel_arr(i,j,khi,1); // v
-
661  });
-
662  }
-
663  } // !periodic
-
664  } // MFIter
-
665 
-
666  } // lev
-
667 }
+
580 {
+
581  // Impose bc's at domain boundaries
+
582  for (int lev = 0; lev <= finest_level; ++lev)
+
583  {
+
584  Box domain(Geom(lev).Domain());
+
585 
+
586  int ihi = domain.bigEnd(0);
+
587  int jhi = domain.bigEnd(1);
+
588  int khi = domain.bigEnd(2);
+
589 
+
590  // Impose periodicity first
+
591  mf_cc_vel[lev].FillBoundary(geom[lev].periodicity());
+
592 
+
593  for (MFIter mfi(mf_cc_vel[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
+
594  {
+
595  // Note that we don't fill corners here -- only the cells that share a face
+
596  // with interior cells -- this is all that is needed to calculate vorticity
+
597  const Box& bx = mfi.tilebox();
+
598  const Array4<Real>& vel_arr = mf_cc_vel[lev].array(mfi);
+
599 
+
600  if (!Geom(lev).isPeriodic(0)) {
+
601  // Low-x side
+
602  if (bx.smallEnd(0) <= domain.smallEnd(0)) {
+
603  Real mult = (phys_bc_type[0] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
604  ParallelFor(makeSlab(bx,0,0), [=] AMREX_GPU_DEVICE(int , int j, int k) noexcept
+
605  {
+
606  vel_arr(-1,j,k,1) = mult*vel_arr(0,j,k,1); // v
+
607  vel_arr(-1,j,k,2) = mult*vel_arr(0,j,k,2); // w
+
608  });
+
609  }
+
610 
+
611  // High-x side
+
612  if (bx.bigEnd(0) >= domain.bigEnd(0)) {
+
613  Real mult = (phys_bc_type[3] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
614  ParallelFor(makeSlab(bx,0,0), [=] AMREX_GPU_DEVICE(int , int j, int k) noexcept
+
615  {
+
616  vel_arr(ihi+1,j,k,1) = mult*vel_arr(ihi,j,k,1); // v
+
617  vel_arr(ihi+1,j,k,2) = mult*vel_arr(ihi,j,k,2); // w
+
618  });
+
619  }
+
620  } // !periodic
+
621 
+
622  if (!Geom(lev).isPeriodic(1)) {
+
623  // Low-y side
+
624  if (bx.smallEnd(1) <= domain.smallEnd(1)) {
+
625  Real mult = (phys_bc_type[1] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
626  ParallelFor(makeSlab(bx,1,0), [=] AMREX_GPU_DEVICE(int i, int , int k) noexcept
+
627  {
+
628  vel_arr(i,-1,k,0) = mult*vel_arr(i,0,k,0); // u
+
629  vel_arr(i,-1,k,2) = mult*vel_arr(i,0,k,2); // w
+
630  });
+
631  }
+
632 
+
633  // High-y side
+
634  if (bx.bigEnd(1) >= domain.bigEnd(1)) {
+
635  Real mult = (phys_bc_type[4] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
636  ParallelFor(makeSlab(bx,1,0), [=] AMREX_GPU_DEVICE(int i, int , int k) noexcept
+
637  {
+
638  vel_arr(i,jhi+1,k,0) = mult*vel_arr(i,jhi,k,0); // u
+
639  vel_arr(i,jhi+1,k,2) = mult*-vel_arr(i,jhi,k,2); // w
+
640  });
+
641  }
+
642  } // !periodic
+
643 
+
644  if (!Geom(lev).isPeriodic(2)) {
+
645  // Low-z side
+
646  if (bx.smallEnd(2) <= domain.smallEnd(2)) {
+
647  Real mult = (phys_bc_type[2] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
648  ParallelFor(makeSlab(bx,2,0), [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
+
649  {
+
650  vel_arr(i,j,-1,0) = mult*vel_arr(i,j,0,0); // u
+
651  vel_arr(i,j,-1,1) = mult*vel_arr(i,j,0,1); // v
+
652  });
+
653  }
+
654 
+
655  // High-z side
+
656  if (bx.bigEnd(2) >= domain.bigEnd(2)) {
+
657  Real mult = (phys_bc_type[5] == ERF_BC::no_slip_wall) ? -1. : 1.;
+
658  ParallelFor(makeSlab(bx,2,0), [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
+
659  {
+
660  vel_arr(i,j,khi+1,0) = mult*vel_arr(i,j,khi,0); // u
+
661  vel_arr(i,j,khi+1,1) = mult*vel_arr(i,j,khi,1); // v
+
662  });
+
663  }
+
664  } // !periodic
+
665  } // MFIter
+
666 
+
667  } // lev
+
668 }
ERF_BC::no_slip_wall
@ no_slip_wall
@@ -5492,122 +5492,122 @@

-
461 {
-
462  BL_PROFILE_VAR("FillCoarsePatch()",FillCoarsePatch);
-
463  AMREX_ASSERT(lev > 0);
-
464 
-
465  //
-
466  // First fill density at the COARSE level so we can convert velocity to momenta at the COARSE level
-
467  //
-
468  bool cons_only = true;
-
469  FillPatch(lev-1, time, {&vars_new[lev-1][Vars::cons], &vars_new[lev-1][Vars::xvel],
-
470  &vars_new[lev-1][Vars::yvel], &vars_new[lev-1][Vars::zvel]},
-
471  {&vars_new[lev-1][Vars::cons],
-
472  &rU_new[lev-1], &rV_new[lev-1], &rW_new[lev-1]},
-
473  false, cons_only);
-
474 
-
475  //
-
476  // Convert velocity to momentum at the COARSE level
-
477  //
-
478  IntVect ngu = IntVect(0,0,0);
-
479  IntVect ngv = IntVect(0,0,0);
-
480  IntVect ngw = IntVect(0,0,0);
-
481 
-
482  VelocityToMomentum(vars_new[lev-1][Vars::xvel], ngu,
-
483  vars_new[lev-1][Vars::yvel], ngv,
-
484  vars_new[lev-1][Vars::zvel], ngw,
-
485  vars_new[lev-1][Vars::cons],
-
486  rU_new[lev-1],
-
487  rV_new[lev-1],
-
488  rW_new[lev-1],
-
489  Geom(lev).Domain(),
-
490  domain_bcs_type);
-
491 
+
462 {
+
463  BL_PROFILE_VAR("FillCoarsePatch()",FillCoarsePatch);
+
464  AMREX_ASSERT(lev > 0);
+
465 
+
466  //
+
467  // First fill density at the COARSE level so we can convert velocity to momenta at the COARSE level
+
468  //
+
469  bool cons_only = true;
+
470  FillPatch(lev-1, time, {&vars_new[lev-1][Vars::cons], &vars_new[lev-1][Vars::xvel],
+
471  &vars_new[lev-1][Vars::yvel], &vars_new[lev-1][Vars::zvel]},
+
472  {&vars_new[lev-1][Vars::cons],
+
473  &rU_new[lev-1], &rV_new[lev-1], &rW_new[lev-1]},
+
474  false, cons_only);
+
475 
+
476  //
+
477  // Convert velocity to momentum at the COARSE level
+
478  //
+
479  IntVect ngu = IntVect(0,0,0);
+
480  IntVect ngv = IntVect(0,0,0);
+
481  IntVect ngw = IntVect(0,0,0);
+
482 
+
483  VelocityToMomentum(vars_new[lev-1][Vars::xvel], ngu,
+
484  vars_new[lev-1][Vars::yvel], ngv,
+
485  vars_new[lev-1][Vars::zvel], ngw,
+
486  vars_new[lev-1][Vars::cons],
+
487  rU_new[lev-1],
+
488  rV_new[lev-1],
+
489  rW_new[lev-1],
+
490  Geom(lev).Domain(),
+
491  domain_bcs_type);
492 
-
493  //
-
494  // Interpolate all cell-centered variables from coarse to fine level
-
495  //
-
496  Interpolater* mapper_c = &cell_cons_interp;
-
497  Interpolater* mapper_f = &face_cons_linear_interp;
-
498 
-
499  int icomp = 0;
-
500  int bccomp = BCVars::cons_bc;
-
501  InterpFromCoarseLevel(vars_new[lev][Vars::cons], time, vars_new[lev-1][Vars::cons],
-
502  icomp, icomp, vars_new[lev][Vars::cons].nComp(),
-
503  geom[lev-1], geom[lev],
-
504  *physbcs_cons[lev-1], BCVars::cons_bc,
-
505  *physbcs_cons[lev ], BCVars::cons_bc,
-
506  refRatio(lev-1), mapper_c, domain_bcs_type, bccomp);
-
507 
-
508  //
-
509  // Interpolate x-momentum from coarse to fine level
-
510  //
-
511  InterpFromCoarseLevel(rU_new[lev], time, rU_new[lev-1],
-
512  0, 0, 1, geom[lev-1], geom[lev],
-
513  *physbcs_u[lev-1], BCVars::xvel_bc,
-
514  *physbcs_u[lev ], BCVars::xvel_bc,
-
515  refRatio(lev-1), mapper_f,
-
516  domain_bcs_type, BCVars::xvel_bc);
-
517 
-
518  //
-
519  // Interpolate y-momentum from coarse to fine level
-
520  //
-
521  bccomp = BCVars::yvel_bc;
-
522  InterpFromCoarseLevel(rV_new[lev], time, rV_new[lev-1],
-
523  0, 0, 1, geom[lev-1], geom[lev],
-
524  *physbcs_v[lev-1], BCVars::yvel_bc,
-
525  *physbcs_v[lev ], BCVars::yvel_bc,
-
526  refRatio(lev-1), mapper_f,
-
527  domain_bcs_type, BCVars::yvel_bc);
-
528 
-
529  //
-
530  // Interpolate z-momentum from coarse to fine level
-
531  //
-
532 
-
533  InterpFromCoarseLevel(rW_new[lev], time, rW_new[lev-1],
-
534  0, 0, 1, geom[lev-1], geom[lev],
-
535  *physbcs_w_no_terrain[lev-1], BCVars::zvel_bc,
-
536  *physbcs_w_no_terrain[lev ], BCVars::zvel_bc,
-
537  refRatio(lev-1), mapper_f,
-
538  domain_bcs_type, BCVars::zvel_bc);
-
539 
-
540  for (int which_lev = lev-1; which_lev <= lev; which_lev++)
-
541  {
-
542  MomentumToVelocity(vars_new[which_lev][Vars::xvel],
-
543  vars_new[which_lev][Vars::yvel],
-
544  vars_new[which_lev][Vars::zvel],
-
545  vars_new[which_lev][Vars::cons],
-
546  rU_new[which_lev],
-
547  rV_new[which_lev],
-
548  rW_new[which_lev],
-
549  Geom(lev).Domain(),
-
550  domain_bcs_type);
-
551  }
-
552 
-
553  vars_new[lev][Vars::cons].FillBoundary(geom[lev].periodicity());
-
554  vars_new[lev][Vars::xvel].FillBoundary(geom[lev].periodicity());
-
555  vars_new[lev][Vars::yvel].FillBoundary(geom[lev].periodicity());
-
556  vars_new[lev][Vars::zvel].FillBoundary(geom[lev].periodicity());
-
557 
-
558  // ***************************************************************************
-
559  // Physical bc's at domain boundary
-
560  // ***************************************************************************
-
561  IntVect ngvect_cons = vars_new[lev][Vars::cons].nGrowVect();
-
562  IntVect ngvect_vels = vars_new[lev][Vars::xvel].nGrowVect();
-
563 
-
564  int ncomp_cons = vars_new[lev][Vars::cons].nComp();
-
565 
-
566  (*physbcs_cons[lev])(vars_new[lev][Vars::cons],0,ncomp_cons,ngvect_cons,time,BCVars::cons_bc);
-
567  ( *physbcs_u[lev])(vars_new[lev][Vars::xvel],0,1 ,ngvect_vels,time,BCVars::xvel_bc);
-
568  ( *physbcs_v[lev])(vars_new[lev][Vars::yvel],0,1 ,ngvect_vels,time,BCVars::yvel_bc);
-
569  ( *physbcs_w[lev])(vars_new[lev][Vars::zvel],vars_new[lev][Vars::xvel],vars_new[lev][Vars::yvel],
-
570  ngvect_vels,time,BCVars::zvel_bc);
-
571 
-
572  // ***************************************************************************
-
573  // Since lev > 0 here we don't worry about m_r2d or wrfbdy data
-
574  // ***************************************************************************
-
575 }
-
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time)
Definition: ERF_FillPatch.cpp:460
+
493 
+
494  //
+
495  // Interpolate all cell-centered variables from coarse to fine level
+
496  //
+
497  Interpolater* mapper_c = &cell_cons_interp;
+
498  Interpolater* mapper_f = &face_cons_linear_interp;
+
499 
+
500  int icomp = 0;
+
501  int bccomp = BCVars::cons_bc;
+
502  InterpFromCoarseLevel(vars_new[lev][Vars::cons], time, vars_new[lev-1][Vars::cons],
+
503  icomp, icomp, vars_new[lev][Vars::cons].nComp(),
+
504  geom[lev-1], geom[lev],
+
505  *physbcs_cons[lev-1], BCVars::cons_bc,
+
506  *physbcs_cons[lev ], BCVars::cons_bc,
+
507  refRatio(lev-1), mapper_c, domain_bcs_type, bccomp);
+
508 
+
509  //
+
510  // Interpolate x-momentum from coarse to fine level
+
511  //
+
512  InterpFromCoarseLevel(rU_new[lev], time, rU_new[lev-1],
+
513  0, 0, 1, geom[lev-1], geom[lev],
+
514  *physbcs_u[lev-1], BCVars::xvel_bc,
+
515  *physbcs_u[lev ], BCVars::xvel_bc,
+
516  refRatio(lev-1), mapper_f,
+
517  domain_bcs_type, BCVars::xvel_bc);
+
518 
+
519  //
+
520  // Interpolate y-momentum from coarse to fine level
+
521  //
+
522  bccomp = BCVars::yvel_bc;
+
523  InterpFromCoarseLevel(rV_new[lev], time, rV_new[lev-1],
+
524  0, 0, 1, geom[lev-1], geom[lev],
+
525  *physbcs_v[lev-1], BCVars::yvel_bc,
+
526  *physbcs_v[lev ], BCVars::yvel_bc,
+
527  refRatio(lev-1), mapper_f,
+
528  domain_bcs_type, BCVars::yvel_bc);
+
529 
+
530  //
+
531  // Interpolate z-momentum from coarse to fine level
+
532  //
+
533 
+
534  InterpFromCoarseLevel(rW_new[lev], time, rW_new[lev-1],
+
535  0, 0, 1, geom[lev-1], geom[lev],
+
536  *physbcs_w_no_terrain[lev-1], BCVars::zvel_bc,
+
537  *physbcs_w_no_terrain[lev ], BCVars::zvel_bc,
+
538  refRatio(lev-1), mapper_f,
+
539  domain_bcs_type, BCVars::zvel_bc);
+
540 
+
541  for (int which_lev = lev-1; which_lev <= lev; which_lev++)
+
542  {
+
543  MomentumToVelocity(vars_new[which_lev][Vars::xvel],
+
544  vars_new[which_lev][Vars::yvel],
+
545  vars_new[which_lev][Vars::zvel],
+
546  vars_new[which_lev][Vars::cons],
+
547  rU_new[which_lev],
+
548  rV_new[which_lev],
+
549  rW_new[which_lev],
+
550  Geom(lev).Domain(),
+
551  domain_bcs_type);
+
552  }
+
553 
+
554  vars_new[lev][Vars::cons].FillBoundary(geom[lev].periodicity());
+
555  vars_new[lev][Vars::xvel].FillBoundary(geom[lev].periodicity());
+
556  vars_new[lev][Vars::yvel].FillBoundary(geom[lev].periodicity());
+
557  vars_new[lev][Vars::zvel].FillBoundary(geom[lev].periodicity());
+
558 
+
559  // ***************************************************************************
+
560  // Physical bc's at domain boundary
+
561  // ***************************************************************************
+
562  IntVect ngvect_cons = vars_new[lev][Vars::cons].nGrowVect();
+
563  IntVect ngvect_vels = vars_new[lev][Vars::xvel].nGrowVect();
+
564 
+
565  int ncomp_cons = vars_new[lev][Vars::cons].nComp();
+
566 
+
567  (*physbcs_cons[lev])(vars_new[lev][Vars::cons],0,ncomp_cons,ngvect_cons,time,BCVars::cons_bc);
+
568  ( *physbcs_u[lev])(vars_new[lev][Vars::xvel],0,1 ,ngvect_vels,time,BCVars::xvel_bc);
+
569  ( *physbcs_v[lev])(vars_new[lev][Vars::yvel],0,1 ,ngvect_vels,time,BCVars::yvel_bc);
+
570  ( *physbcs_w[lev])(vars_new[lev][Vars::zvel],vars_new[lev][Vars::xvel],vars_new[lev][Vars::yvel],
+
571  ngvect_vels,time,BCVars::zvel_bc);
+
572 
+
573  // ***************************************************************************
+
574  // Since lev > 0 here we don't worry about m_r2d or wrfbdy data
+
575  // ***************************************************************************
+
576 }
+
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time)
Definition: ERF_FillPatch.cpp:461
Here is the call graph for this function:
@@ -5877,31 +5877,32 @@

420  Tau13_lev[lev].get(), Tau31_lev[lev].get(),

421  Tau23_lev[lev].get(), Tau32_lev[lev].get(),
422  SFS_hfx3_lev[lev].get(),
-
423  z_phys_nd[lev].get());
-
424  }
-
425 
-
426  // We always come in to this call with momenta so we need to leave with momenta!
-
427  // We need to make sure we convert back on all ghost cells/faces because this is
-
428  // how velocity from fine-fine copies (as well as physical and interpolated bcs) will be filled
-
429  if (!cons_only) {
-
430  IntVect ngu = mfs_vel[Vars::xvel]->nGrowVect();
-
431  IntVect ngv = mfs_vel[Vars::yvel]->nGrowVect();
-
432  IntVect ngw = mfs_vel[Vars::zvel]->nGrowVect();
-
433 
-
434  if (!solverChoice.use_NumDiff) {
-
435  ngu = IntVect(1,1,1);
-
436  ngv = IntVect(1,1,1);
-
437  ngw = IntVect(1,1,0);
-
438  }
-
439  VelocityToMomentum(*mfs_vel[Vars::xvel], ngu,
-
440  *mfs_vel[Vars::yvel], ngv,
-
441  *mfs_vel[Vars::zvel], ngw,
-
442  *mfs_vel[Vars::cons],
-
443  *mfs_mom[IntVars::xmom], *mfs_mom[IntVars::ymom], *mfs_mom[IntVars::zmom],
-
444  Geom(lev).Domain(),
-
445  domain_bcs_type);
-
446  }
-
447 }
+
423  SFS_q1fx3_lev[lev].get(),
+
424  z_phys_nd[lev].get());
+
425  }
+
426 
+
427  // We always come in to this call with momenta so we need to leave with momenta!
+
428  // We need to make sure we convert back on all ghost cells/faces because this is
+
429  // how velocity from fine-fine copies (as well as physical and interpolated bcs) will be filled
+
430  if (!cons_only) {
+
431  IntVect ngu = mfs_vel[Vars::xvel]->nGrowVect();
+
432  IntVect ngv = mfs_vel[Vars::yvel]->nGrowVect();
+
433  IntVect ngw = mfs_vel[Vars::zvel]->nGrowVect();
+
434 
+
435  if (!solverChoice.use_NumDiff) {
+
436  ngu = IntVect(1,1,1);
+
437  ngv = IntVect(1,1,1);
+
438  ngw = IntVect(1,1,0);
+
439  }
+
440  VelocityToMomentum(*mfs_vel[Vars::xvel], ngu,
+
441  *mfs_vel[Vars::yvel], ngv,
+
442  *mfs_vel[Vars::zvel], ngw,
+
443  *mfs_vel[Vars::cons],
+
444  *mfs_mom[IntVars::xmom], *mfs_mom[IntVars::ymom], *mfs_mom[IntVars::zmom],
+
445  Geom(lev).Domain(),
+
446  domain_bcs_type);
+
447  }
+
448 }
null_bc
PhysBCFunctNoOp null_bc
Definition: ERF_FillPatch.cpp:10
ApplyMask
AMREX_GPU_HOST AMREX_FORCE_INLINE void ApplyMask(amrex::MultiFab &dst, const amrex::iMultiFab &imask, const int nghost=0)
Definition: Utils.H:351
ERF::fill_from_bndryregs
void fill_from_bndryregs(const amrex::Vector< amrex::MultiFab * > &mfs, amrex::Real time)
Definition: BoundaryConditions_bndryreg.cpp:13
@@ -7404,8 +7405,8 @@

-

◆ init_geo_wind_profile()

+ +

◆ init_geo_wind_profile()

@@ -7447,7 +7448,7 @@

const amrex::Geometry &  - geom, + lgeom, @@ -7469,12 +7470,12 @@

416 {
417  const int klo = 0;
-
418  const int khi = geom.Domain().bigEnd()[AMREX_SPACEDIM-1];
-
419  const amrex::Real dz = geom.CellSize()[AMREX_SPACEDIM-1];
+
418  const int khi = lgeom.Domain().bigEnd()[AMREX_SPACEDIM-1];
+
419  const amrex::Real dz = lgeom.CellSize()[AMREX_SPACEDIM-1];
420 
421  const bool grid_stretch = (zlev_stag.size() > 0);
-
422  const Real zbot = (grid_stretch) ? zlev_stag[klo] : geom.ProbLo(AMREX_SPACEDIM-1);
-
423  const Real ztop = (grid_stretch) ? zlev_stag[khi+1] : geom.ProbHi(AMREX_SPACEDIM-1);
+
422  const Real zbot = (grid_stretch) ? zlev_stag[klo] : lgeom.ProbLo(AMREX_SPACEDIM-1);
+
423  const Real ztop = (grid_stretch) ? zlev_stag[khi+1] : lgeom.ProbHi(AMREX_SPACEDIM-1);
424 
425  amrex::Print() << "Reading geostrophic wind profile from " << input_file << std::endl;
426  std::ifstream profile_reader(input_file);
@@ -7518,8 +7519,8 @@

Here is the call graph for this function:

-
- +
+ @@ -8309,7 +8310,7 @@

771  if (solverChoice.use_terrain > 0) {

772  amrex::Print() << "Note: 1-D geostrophic wind profile input is only defined for grid stretching, not real terrain" << std::endl;
773  }
-
774  init_geo_wind_profile(solverChoice.abl_geo_wind_table,
+
774  init_geo_wind_profile(solverChoice.abl_geo_wind_table,
775  h_u_geos[lev], d_u_geos[lev],
776  h_v_geos[lev], d_v_geos[lev],
777  geom[lev],
@@ -8683,7 +8684,7 @@

ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:1224

ERF::start_time
amrex::Real start_time
Definition: ERF.H:814
ERF::m_w2d
std::unique_ptr< WriteBndryPlanes > m_w2d
Definition: ERF.H:1026
-
ERF::init_geo_wind_profile
void init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &geom, const amrex::Vector< amrex::Real > &zlev_stag)
Definition: ERF_init1d.cpp:409
+
ERF::init_geo_wind_profile
void init_geo_wind_profile(const std::string input_file, amrex::Vector< amrex::Real > &u_geos, amrex::Gpu::DeviceVector< amrex::Real > &u_geos_d, amrex::Vector< amrex::Real > &v_geos, amrex::Gpu::DeviceVector< amrex::Real > &v_geos_d, const amrex::Geometry &lgeom, const amrex::Vector< amrex::Real > &zlev_stag)
Definition: ERF_init1d.cpp:409
ERF::initSponge
void initSponge()
Initialize sponge profiles.
Definition: ERF_init1d.cpp:124
ERF::is_it_time_for_action
static bool is_it_time_for_action(int nstep, amrex::Real time, amrex::Real dt, int action_interval, amrex::Real action_per)
Definition: ERF_WriteScalarProfiles.cpp:464
ERF::InitData
void InitData()
Definition: ERF.cpp:556
@@ -16119,7 +16120,7 @@

Compute_h_zeta_AtIface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtIface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:80

Compute_h_zeta_AtJface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:123
Compute_h_eta_AtJface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_eta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:151
-
ERF::FillBdyCCVels
void FillBdyCCVels(amrex::Vector< amrex::MultiFab > &mf_cc_vel)
Definition: ERF_FillPatch.cpp:578
+
ERF::FillBdyCCVels
void FillBdyCCVels(amrex::Vector< amrex::MultiFab > &mf_cc_vel)
Definition: ERF_FillPatch.cpp:579
ERF::PlotFileVarNames
static amrex::Vector< std::string > PlotFileVarNames(amrex::Vector< std::string > plot_var_names)
Definition: Plotfile.cpp:154
ERF::WriteMultiLevelPlotfileWithTerrain
void WriteMultiLevelPlotfileWithTerrain(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const
Definition: Plotfile.cpp:1423
ERF::writeJobInfo
void writeJobInfo(const std::string &dir) const
Definition: writeJobInfo.cpp:9
diff --git a/classERF.js b/classERF.js index d992ef60b3..9a0948475a 100644 --- a/classERF.js +++ b/classERF.js @@ -46,7 +46,7 @@ var classERF = [ "init_Dirichlet_bc_data", "classERF.html#a3079a30cce7e1a01d5c9705f393b5a63", null ], [ "init_from_hse", "classERF.html#a857a8f76768ec4451b995cbf4f4ac176", null ], [ "init_from_input_sounding", "classERF.html#a2908bcd920ab5e3fef171a37302853ec", null ], - [ "init_geo_wind_profile", "classERF.html#aacc932516cb277301951a8258545873c", null ], + [ "init_geo_wind_profile", "classERF.html#aab564dd3009ef83466b50db6d997b563", null ], [ "init_only", "classERF.html#a80981e20939a6a38ba17478da2253ff1", null ], [ "init_stuff", "classERF.html#a976799d747d046615ccbf27f366a8b96", null ], [ "init_uniform", "classERF.html#ae618963cf90e247b72fbd71d5b13599d", null ], diff --git a/classERF_aacc932516cb277301951a8258545873c_cgraph.map b/classERF_aab564dd3009ef83466b50db6d997b563_cgraph.map similarity index 100% rename from classERF_aacc932516cb277301951a8258545873c_cgraph.map rename to classERF_aab564dd3009ef83466b50db6d997b563_cgraph.map diff --git a/classERF_aacc932516cb277301951a8258545873c_cgraph.md5 b/classERF_aab564dd3009ef83466b50db6d997b563_cgraph.md5 similarity index 100% rename from classERF_aacc932516cb277301951a8258545873c_cgraph.md5 rename to classERF_aab564dd3009ef83466b50db6d997b563_cgraph.md5 diff --git a/classERF_aacc932516cb277301951a8258545873c_cgraph.png b/classERF_aab564dd3009ef83466b50db6d997b563_cgraph.png similarity index 100% rename from classERF_aacc932516cb277301951a8258545873c_cgraph.png rename to classERF_aab564dd3009ef83466b50db6d997b563_cgraph.png diff --git a/classMOSTAverage-members.html b/classMOSTAverage-members.html index 5a17b47b72..15a6d42e37 100644 --- a/classMOSTAverage-members.html +++ b/classMOSTAverage-members.html @@ -114,6 +114,8 @@ m_policyMOSTAverageprotected m_pp_prefixMOSTAverageprotected m_radiusMOSTAverageprotected + m_rot_fieldsMOSTAverageprotected + m_rotateMOSTAverageprotected m_t_avgMOSTAverageprotected m_t_initMOSTAverageprotected m_time_windowMOSTAverageprotected @@ -133,14 +135,15 @@ set_norm_positions_T()MOSTAverage set_plane_normalization()MOSTAverage set_region_normalization()MOSTAverageinline - set_z_positions_T()MOSTAverage - trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)MOSTAverageinlinestatic - update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)MOSTAverage - write_averages(int lev)MOSTAverage - write_k_indices(int lev)MOSTAverage - write_norm_indices(int lev)MOSTAverage - write_xz_positions(int lev, int j)MOSTAverage - ~MOSTAverage()MOSTAverageinline + set_rotated_fields(int lev)MOSTAverage + set_z_positions_T()MOSTAverage + trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)MOSTAverageinlinestatic + update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)MOSTAverage + write_averages(int lev)MOSTAverage + write_k_indices(int lev)MOSTAverage + write_norm_indices(int lev)MOSTAverage + write_xz_positions(int lev, int j)MOSTAverage + ~MOSTAverage()MOSTAverageinline

diff --git a/classMOSTAverage.html b/classMOSTAverage.html index 97024a93eb..f2be80ef7e 100644 --- a/classMOSTAverage.html +++ b/classMOSTAverage.html @@ -98,21 +98,21 @@
Collaboration graph
- - - - - - - - - - - - - - - + + + + + + + + + + + + + + +
[legend]
@@ -132,6 +132,8 @@ + + @@ -178,7 +180,7 @@ - + @@ -186,6 +188,8 @@ + + @@ -204,6 +208,8 @@ + + @@ -385,37 +391,44 @@

541 {
-
542  switch(m_policy) {
-
543  case 0: // Standard plane average
-
544  compute_plane_averages(lev);
-
545  break;
-
546  case 1: // Local region/point
-
547  compute_region_averages(lev);
-
548  break;
-
549  default:
-
550  AMREX_ASSERT_WITH_MESSAGE(false, "Unknown policy for MOSTAverage!");
-
551  }
-
552 
-
553  // We have initialized the averages
-
554  if (m_t_avg) m_t_init[lev] = 1;
-
555 }
-
MOSTAverage::m_t_avg
bool m_t_avg
Definition: MOSTAverage.H:202
-
MOSTAverage::m_policy
int m_policy
Definition: MOSTAverage.H:173
-
MOSTAverage::m_t_init
amrex::Vector< int > m_t_init
Definition: MOSTAverage.H:203
-
MOSTAverage::compute_region_averages
void compute_region_averages(int lev)
Definition: MOSTAverage.cpp:754
-
MOSTAverage::compute_plane_averages
void compute_plane_averages(int lev)
Definition: MOSTAverage.cpp:564
+
629 {
+
630  if (m_rotate) set_rotated_fields(lev);
+
631 
+
632  switch(m_policy) {
+
633  case 0: // Standard plane average
+
634  compute_plane_averages(lev);
+
635  break;
+
636  case 1: // Local region/point
+
637  compute_region_averages(lev);
+
638  break;
+
639  default:
+
640  AMREX_ASSERT_WITH_MESSAGE(false, "Unknown policy for MOSTAverage!");
+
641  }
+
642 
+
643  // We have initialized the averages
+
644  if (m_t_avg) m_t_init[lev] = 1;
+
645 }
+
MOSTAverage::m_t_avg
bool m_t_avg
Definition: MOSTAverage.H:207
+
MOSTAverage::m_policy
int m_policy
Definition: MOSTAverage.H:176
+
MOSTAverage::set_rotated_fields
void set_rotated_fields(int lev)
Definition: MOSTAverage.cpp:227
+
MOSTAverage::m_t_init
amrex::Vector< int > m_t_init
Definition: MOSTAverage.H:208
+
MOSTAverage::m_rotate
bool m_rotate
Definition: MOSTAverage.H:177
+
MOSTAverage::compute_region_averages
void compute_region_averages(int lev)
Definition: MOSTAverage.cpp:848
+
MOSTAverage::compute_plane_averages
void compute_plane_averages(int lev)
Definition: MOSTAverage.cpp:654
Here is the call graph for this function:
- - - - - - + + + + + + + + +
@@ -443,206 +456,211 @@

565 {
-
566  // Peel back the level
-
567  auto& fields = m_fields[lev];
-
568  auto& averages = m_averages[lev];
-
569  const auto & geom = m_geom[lev];
-
570 
-
571  auto& z_phys = m_z_phys_nd[lev];
-
572  auto& x_pos = m_x_pos[lev];
-
573  auto& y_pos = m_y_pos[lev];
-
574  auto& z_pos = m_z_pos[lev];
-
575 
-
576  auto& i_indx = m_i_indx[lev];
-
577  auto& j_indx = m_j_indx[lev];
-
578  auto& k_indx = m_k_indx[lev];
-
579 
-
580  auto& ncell_plane = m_ncell_plane[lev];
-
581  auto& plane_average = m_plane_average[lev];
-
582 
-
583  // Set factors for time averaging
-
584  Real d_fact_new, d_fact_old;
-
585  if (m_t_avg && m_t_init[lev]) {
-
586  d_fact_new = m_fact_new;
-
587  d_fact_old = m_fact_old;
-
588  } else {
-
589  d_fact_new = 1.0;
-
590  d_fact_old = 0.0;
-
591  }
-
592 
-
593  // GPU array to accumulate averages into
-
594  Gpu::DeviceVector<Real> pavg(plane_average.size(), 0.0);
-
595  Real* plane_avg = pavg.data();
-
596 
-
597  // Vectors for normalization and buffer storage
-
598  Vector<Real> denom(plane_average.size(),0.0);
-
599  Vector<Real> val_old(plane_average.size(),0.0);
-
600 
-
601  // Averages over all the fields
-
602  //----------------------------------------------------------
-
603  Box domain = geom.Domain();
-
604 
-
605  Array<int,AMREX_SPACEDIM> is_per = {0,0,0};
-
606  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
-
607  if (geom.isPeriodic(idim)) is_per[idim] = 1;
-
608  }
-
609 
-
610  for (int imf(0); imf < m_nvar; ++imf) {
-
611 
-
612  // Continue if no valid Qv pointer
-
613  if (!fields[imf]) continue;
-
614 
-
615  denom[imf] = 1.0 / (Real)ncell_plane[imf];
-
616  val_old[imf] = plane_average[imf]*d_fact_old;
-
617 
-
618 #ifdef _OPENMP
-
619 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
620 #endif
-
621  for (MFIter mfi(*fields[imf], TileNoZ()); mfi.isValid(); ++mfi) {
-
622  Box vbx = mfi.validbox(); // This is the grid (not tile)
-
623  Box pbx = mfi.tilebox(); // This is the tile (not grid)
-
624  pbx.setSmall(2,0); pbx.setBig(2,0);
-
625 
-
626  // Avoid double counting nodal data by changing the high end when we are
-
627  // at the high side of the grid (not just of the tile)
-
628  IndexType ixt = averages[imf]->boxArray().ixType();
-
629  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
-
630  if ( ixt.nodeCentered(idim) && (pbx.bigEnd(idim) == vbx.bigEnd(idim)) ) {
-
631  int dom_hi = domain.bigEnd(idim)+1;
-
632  if (pbx.bigEnd(idim) < dom_hi || is_per[idim]) {
-
633  pbx.growHi(idim,-1);
-
634  }
-
635  }
-
636  }
-
637 
-
638  auto mf_arr = fields[imf]->const_array(mfi);
-
639 
-
640  if (m_interp) {
-
641  const auto plo = geom.ProbLoArray();
-
642  const auto dxInv = geom.InvCellSizeArray();
-
643  const auto z_phys_arr = z_phys->const_array(mfi);
-
644  auto x_pos_arr = x_pos->array(mfi);
-
645  auto y_pos_arr = y_pos->array(mfi);
-
646  auto z_pos_arr = z_pos->array(mfi);
-
647  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
-
648  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
-
649  {
-
650  Real interp{0};
-
651  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
-
652  &interp, mf_arr, z_phys_arr, plo, dxInv, 1);
-
653  Real val = interp;
-
654  Gpu::deviceReduceSum(&plane_avg[imf], val, handler);
-
655  });
-
656  } else {
-
657  auto k_arr = k_indx->const_array(mfi);
-
658  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
-
659  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
-
660  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
-
661  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
-
662  {
-
663  int mk = k_arr(i,j,k);
-
664  int mj = j_arr ? j_arr(i,j,k) : j;
-
665  int mi = i_arr ? i_arr(i,j,k) : i;
-
666  Real val = mf_arr(mi,mj,mk);
-
667  Gpu::deviceReduceSum(&plane_avg[imf], val, handler);
-
668  });
-
669  }
-
670  }
-
671  }
-
672 
-
673  //
-
674  //------------------------------------------------------------------------
-
675  // Averages for the tangential velocity magnitude
-
676  // (This is cell-centered so we don't need to worry about double-counting)
-
677  //------------------------------------------------------------------------
-
678  //
-
679  {
-
680  int imf = 0;
-
681  int iavg = m_navg - 1;
-
682  denom[iavg] = 1.0 / (Real)ncell_plane[iavg];
-
683  val_old[iavg] = plane_average[iavg]*d_fact_old;
-
684 
-
685 #ifdef _OPENMP
-
686 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
687 #endif
-
688  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi)
-
689  {
-
690  Box pbx = mfi.tilebox();
-
691  pbx.setSmall(2,0); pbx.setBig(2,0);
-
692 
-
693  // Last element is Umag and always cell centered
-
694  auto u_mf_arr = fields[imf ]->const_array(mfi);
-
695  auto v_mf_arr = fields[imf+1]->const_array(mfi);
-
696 
-
697  if (m_interp) {
-
698  const auto plo = m_geom[lev].ProbLoArray();
-
699  const auto dxInv = m_geom[lev].InvCellSizeArray();
-
700  const auto z_phys_arr = z_phys->const_array(mfi);
-
701  auto x_pos_arr = x_pos->array(mfi);
-
702  auto y_pos_arr = y_pos->array(mfi);
-
703  auto z_pos_arr = z_pos->array(mfi);
-
704  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
-
705  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
-
706  {
-
707  Real u_interp{0};
-
708  Real v_interp{0};
-
709  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
-
710  &u_interp, u_mf_arr, z_phys_arr, plo, dxInv, 1);
-
711  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
-
712  &v_interp, v_mf_arr, z_phys_arr, plo, dxInv, 1);
-
713  const Real val = std::sqrt(u_interp*u_interp + v_interp*v_interp);
-
714  Gpu::deviceReduceSum(&plane_avg[iavg], val, handler);
-
715  });
-
716  } else {
-
717  auto k_arr = k_indx->const_array(mfi);
-
718  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
-
719  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
-
720  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
-
721  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
-
722  {
-
723  int mk = k_arr(i,j,k);
-
724  int mj = j_arr ? j_arr(i,j,k) : j;
-
725  int mi = i_arr ? i_arr(i,j,k) : i;
-
726  const Real u_val = 0.5 * (u_mf_arr(mi,mj,mk) + u_mf_arr(mi+1,mj ,mk));
-
727  const Real v_val = 0.5 * (v_mf_arr(mi,mj,mk) + v_mf_arr(mi ,mj+1,mk));
-
728  const Real val = std::sqrt(u_val*u_val + v_val*v_val);
-
729  Gpu::deviceReduceSum(&plane_avg[iavg], val, handler);
-
730  });
-
731  }
-
732  }
-
733  }
-
734 
-
735  // Copy to host and sum across procs
-
736  Gpu::copy(Gpu::deviceToHost, pavg.begin(), pavg.end(), plane_average.begin());
-
737  ParallelDescriptor::ReduceRealSum(plane_average.data(), plane_average.size());
-
738 
-
739  // No spatial variation with plane averages
-
740  for (int iavg(0); iavg < m_navg; ++iavg){
-
741  plane_average[iavg] *= denom[iavg]*d_fact_new;
-
742  plane_average[iavg] += val_old[iavg];
-
743  averages[iavg]->setVal(plane_average[iavg]);
-
744  }
-
745 }
+
655 {
+
656  // Peel back the level
+
657  auto& fields = m_fields[lev];
+
658  auto& rot_fields = m_rot_fields[lev];
+
659  auto& averages = m_averages[lev];
+
660  const auto & geom = m_geom[lev];
+
661 
+
662  auto& z_phys = m_z_phys_nd[lev];
+
663  auto& x_pos = m_x_pos[lev];
+
664  auto& y_pos = m_y_pos[lev];
+
665  auto& z_pos = m_z_pos[lev];
+
666 
+
667  auto& i_indx = m_i_indx[lev];
+
668  auto& j_indx = m_j_indx[lev];
+
669  auto& k_indx = m_k_indx[lev];
+
670 
+
671  auto& ncell_plane = m_ncell_plane[lev];
+
672  auto& plane_average = m_plane_average[lev];
+
673 
+
674  // Set factors for time averaging
+
675  Real d_fact_new, d_fact_old;
+
676  if (m_t_avg && m_t_init[lev]) {
+
677  d_fact_new = m_fact_new;
+
678  d_fact_old = m_fact_old;
+
679  } else {
+
680  d_fact_new = 1.0;
+
681  d_fact_old = 0.0;
+
682  }
+
683 
+
684  // GPU array to accumulate averages into
+
685  Gpu::DeviceVector<Real> pavg(plane_average.size(), 0.0);
+
686  Real* plane_avg = pavg.data();
+
687 
+
688  // Vectors for normalization and buffer storage
+
689  Vector<Real> denom(plane_average.size(),0.0);
+
690  Vector<Real> val_old(plane_average.size(),0.0);
+
691 
+
692  // Averages over all the fields
+
693  //----------------------------------------------------------
+
694  Box domain = geom.Domain();
+
695 
+
696  Array<int,AMREX_SPACEDIM> is_per = {0,0,0};
+
697  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
+
698  if (geom.isPeriodic(idim)) is_per[idim] = 1;
+
699  }
+
700 
+
701  for (int imf(0); imf < (m_nvar-1); ++imf) {
+
702 
+
703  // Continue if no valid Qv pointer
+
704  if (!fields[imf]) continue;
+
705 
+
706  denom[imf] = 1.0 / (Real)ncell_plane[imf];
+
707  val_old[imf] = plane_average[imf]*d_fact_old;
+
708 
+
709 #ifdef _OPENMP
+
710 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
711 #endif
+
712  for (MFIter mfi(*fields[imf], TileNoZ()); mfi.isValid(); ++mfi) {
+
713  Box vbx = mfi.validbox(); // This is the grid (not tile)
+
714  Box pbx = mfi.tilebox(); // This is the tile (not grid)
+
715  pbx.setSmall(2,0); pbx.setBig(2,0);
+
716 
+
717  // Avoid double counting nodal data by changing the high end when we are
+
718  // at the high side of the grid (not just of the tile)
+
719  IndexType ixt = averages[imf]->boxArray().ixType();
+
720  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
+
721  if ( ixt.nodeCentered(idim) && (pbx.bigEnd(idim) == vbx.bigEnd(idim)) ) {
+
722  int dom_hi = domain.bigEnd(idim)+1;
+
723  if (pbx.bigEnd(idim) < dom_hi || is_per[idim]) {
+
724  pbx.growHi(idim,-1);
+
725  }
+
726  }
+
727  }
+
728 
+
729  auto mf_arr = (m_rotate) ? rot_fields[imf]->const_array(mfi) :
+
730  fields[imf]->const_array(mfi);
+
731 
+
732  if (m_interp) {
+
733  const auto plo = geom.ProbLoArray();
+
734  const auto dxInv = geom.InvCellSizeArray();
+
735  const auto z_phys_arr = z_phys->const_array(mfi);
+
736  auto x_pos_arr = x_pos->array(mfi);
+
737  auto y_pos_arr = y_pos->array(mfi);
+
738  auto z_pos_arr = z_pos->array(mfi);
+
739  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
+
740  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
+
741  {
+
742  Real interp{0};
+
743  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
+
744  &interp, mf_arr, z_phys_arr, plo, dxInv, 1);
+
745  Real val = interp;
+
746  Gpu::deviceReduceSum(&plane_avg[imf], val, handler);
+
747  });
+
748  } else {
+
749  auto k_arr = k_indx->const_array(mfi);
+
750  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
+
751  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
+
752  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
+
753  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
+
754  {
+
755  int mk = k_arr(i,j,k);
+
756  int mj = j_arr ? j_arr(i,j,k) : j;
+
757  int mi = i_arr ? i_arr(i,j,k) : i;
+
758  Real val = mf_arr(mi,mj,mk);
+
759  Gpu::deviceReduceSum(&plane_avg[imf], val, handler);
+
760  });
+
761  }
+
762  }
+
763  }
+
764 
+
765  //
+
766  //------------------------------------------------------------------------
+
767  // Averages for the tangential velocity magnitude
+
768  // (This is cell-centered so we don't need to worry about double-counting)
+
769  //------------------------------------------------------------------------
+
770  //
+
771  {
+
772  int imf = 0;
+
773  int iavg = m_navg - 1;
+
774  denom[iavg] = 1.0 / (Real)ncell_plane[iavg];
+
775  val_old[iavg] = plane_average[iavg]*d_fact_old;
+
776 
+
777 #ifdef _OPENMP
+
778 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
779 #endif
+
780  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi)
+
781  {
+
782  Box pbx = mfi.tilebox();
+
783  pbx.setSmall(2,0); pbx.setBig(2,0);
+
784 
+
785  // Last element is Umag and always cell centered
+
786  auto u_mf_arr = (m_rotate) ? rot_fields[imf ]->const_array(mfi) :
+
787  fields[imf ]->const_array(mfi);
+
788  auto v_mf_arr = (m_rotate) ? rot_fields[imf+1]->const_array(mfi) :
+
789  fields[imf+1]->const_array(mfi);
+
790 
+
791  if (m_interp) {
+
792  const auto plo = m_geom[lev].ProbLoArray();
+
793  const auto dxInv = m_geom[lev].InvCellSizeArray();
+
794  const auto z_phys_arr = z_phys->const_array(mfi);
+
795  auto x_pos_arr = x_pos->array(mfi);
+
796  auto y_pos_arr = y_pos->array(mfi);
+
797  auto z_pos_arr = z_pos->array(mfi);
+
798  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
+
799  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
+
800  {
+
801  Real u_interp{0};
+
802  Real v_interp{0};
+
803  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
+
804  &u_interp, u_mf_arr, z_phys_arr, plo, dxInv, 1);
+
805  trilinear_interp_T(x_pos_arr(i,j,k), y_pos_arr(i,j,k), z_pos_arr(i,j,k),
+
806  &v_interp, v_mf_arr, z_phys_arr, plo, dxInv, 1);
+
807  const Real val = std::sqrt(u_interp*u_interp + v_interp*v_interp);
+
808  Gpu::deviceReduceSum(&plane_avg[iavg], val, handler);
+
809  });
+
810  } else {
+
811  auto k_arr = k_indx->const_array(mfi);
+
812  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
+
813  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
+
814  ParallelFor(Gpu::KernelInfo().setReduction(true), pbx, [=]
+
815  AMREX_GPU_DEVICE(int i, int j, int k, Gpu::Handler const& handler) noexcept
+
816  {
+
817  int mk = k_arr(i,j,k);
+
818  int mj = j_arr ? j_arr(i,j,k) : j;
+
819  int mi = i_arr ? i_arr(i,j,k) : i;
+
820  const Real u_val = 0.5 * (u_mf_arr(mi,mj,mk) + u_mf_arr(mi+1,mj ,mk));
+
821  const Real v_val = 0.5 * (v_mf_arr(mi,mj,mk) + v_mf_arr(mi ,mj+1,mk));
+
822  const Real val = std::sqrt(u_val*u_val + v_val*v_val);
+
823  Gpu::deviceReduceSum(&plane_avg[iavg], val, handler);
+
824  });
+
825  }
+
826  }
+
827  }
+
828 
+
829  // Copy to host and sum across procs
+
830  Gpu::copy(Gpu::deviceToHost, pavg.begin(), pavg.end(), plane_average.begin());
+
831  ParallelDescriptor::ReduceRealSum(plane_average.data(), plane_average.size());
+
832 
+
833  // No spatial variation with plane averages
+
834  for (int iavg(0); iavg < m_navg; ++iavg){
+
835  plane_average[iavg] *= denom[iavg]*d_fact_new;
+
836  plane_average[iavg] += val_old[iavg];
+
837  averages[iavg]->setVal(plane_average[iavg]);
+
838  }
+
839 }
TileNoZ
AMREX_FORCE_INLINE amrex::IntVect TileNoZ()
Definition: TileNoZ.H:11
-
MOSTAverage::m_navg
int m_navg
Definition: MOSTAverage.H:171
-
MOSTAverage::m_averages
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_averages
Definition: MOSTAverage.H:182
-
MOSTAverage::m_y_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_y_pos
Definition: MOSTAverage.H:177
-
MOSTAverage::m_i_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_i_indx
Definition: MOSTAverage.H:179
-
MOSTAverage::m_z_phys_nd
amrex::Vector< amrex::MultiFab * > m_z_phys_nd
Definition: MOSTAverage.H:166
-
MOSTAverage::m_x_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_x_pos
Definition: MOSTAverage.H:176
-
MOSTAverage::m_plane_average
amrex::Vector< amrex::Vector< amrex::Real > > m_plane_average
Definition: MOSTAverage.H:187
-
MOSTAverage::m_z_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_z_pos
Definition: MOSTAverage.H:178
-
MOSTAverage::m_ncell_plane
amrex::Vector< amrex::Vector< int > > m_ncell_plane
Definition: MOSTAverage.H:186
-
MOSTAverage::m_nvar
int m_nvar
Definition: MOSTAverage.H:170
-
MOSTAverage::m_fact_new
amrex::Real m_fact_new
Definition: MOSTAverage.H:205
-
MOSTAverage::m_j_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_j_indx
Definition: MOSTAverage.H:180
-
MOSTAverage::m_fields
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_fields
Definition: MOSTAverage.H:165
-
MOSTAverage::m_fact_old
amrex::Real m_fact_old
Definition: MOSTAverage.H:205
-
MOSTAverage::m_interp
bool m_interp
Definition: MOSTAverage.H:197
-
MOSTAverage::m_geom
const amrex::Vector< amrex::Geometry > m_geom
Definition: MOSTAverage.H:164
-
MOSTAverage::trilinear_interp_T
AMREX_GPU_HOST_DEVICE static AMREX_INLINE void trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)
Definition: MOSTAverage.H:105
-
MOSTAverage::m_k_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_k_indx
Definition: MOSTAverage.H:181
+
MOSTAverage::m_navg
int m_navg
Definition: MOSTAverage.H:174
+
MOSTAverage::m_averages
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_averages
Definition: MOSTAverage.H:186
+
MOSTAverage::m_y_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_y_pos
Definition: MOSTAverage.H:181
+
MOSTAverage::m_i_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_i_indx
Definition: MOSTAverage.H:183
+
MOSTAverage::m_z_phys_nd
amrex::Vector< amrex::MultiFab * > m_z_phys_nd
Definition: MOSTAverage.H:169
+
MOSTAverage::m_x_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_x_pos
Definition: MOSTAverage.H:180
+
MOSTAverage::m_rot_fields
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_rot_fields
Definition: MOSTAverage.H:187
+
MOSTAverage::m_plane_average
amrex::Vector< amrex::Vector< amrex::Real > > m_plane_average
Definition: MOSTAverage.H:192
+
MOSTAverage::m_z_pos
amrex::Vector< std::unique_ptr< amrex::MultiFab > > m_z_pos
Definition: MOSTAverage.H:182
+
MOSTAverage::m_ncell_plane
amrex::Vector< amrex::Vector< int > > m_ncell_plane
Definition: MOSTAverage.H:191
+
MOSTAverage::m_nvar
int m_nvar
Definition: MOSTAverage.H:173
+
MOSTAverage::m_fact_new
amrex::Real m_fact_new
Definition: MOSTAverage.H:210
+
MOSTAverage::m_j_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_j_indx
Definition: MOSTAverage.H:184
+
MOSTAverage::m_fields
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_fields
Definition: MOSTAverage.H:168
+
MOSTAverage::m_fact_old
amrex::Real m_fact_old
Definition: MOSTAverage.H:210
+
MOSTAverage::m_interp
bool m_interp
Definition: MOSTAverage.H:202
+
MOSTAverage::m_geom
const amrex::Vector< amrex::Geometry > m_geom
Definition: MOSTAverage.H:167
+
MOSTAverage::trilinear_interp_T
AMREX_GPU_HOST_DEVICE static AMREX_INLINE void trilinear_interp_T(const amrex::Real &xp, const amrex::Real &yp, const amrex::Real &zp, amrex::Real *interp_vals, amrex::Array4< amrex::Real const > const &interp_array, amrex::Array4< amrex::Real const > const &z_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &plo, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxi, const int interp_comp)
Definition: MOSTAverage.H:108
+
MOSTAverage::m_k_indx
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > m_k_indx
Definition: MOSTAverage.H:185

Referenced by compute_averages().

@@ -689,224 +707,228 @@

755 {
-
756  // Peel back the level
-
757  auto& fields = m_fields[lev];
-
758  auto& averages = m_averages[lev];
-
759  const auto & geom = m_geom[lev];
-
760 
-
761  auto& z_phys = m_z_phys_nd[lev];
-
762  auto& x_pos = m_x_pos[lev];
-
763  auto& y_pos = m_y_pos[lev];
-
764  auto& z_pos = m_z_pos[lev];
-
765 
-
766  auto& i_indx = m_i_indx[lev];
-
767  auto& j_indx = m_j_indx[lev];
-
768  auto& k_indx = m_k_indx[lev];
-
769 
-
770  // Set factors for time averaging
-
771  Real d_fact_new, d_fact_old;
-
772  if (m_t_avg && m_t_init[lev]) {
-
773  d_fact_new = m_fact_new;
-
774  d_fact_old = m_fact_old;
-
775  } else {
-
776  d_fact_new = 1.0;
-
777  d_fact_old = 0.0;
-
778  }
-
779 
-
780  // Number of cells contained in the local average
-
781  const Real denom = 1.0 / (Real) m_ncell_region;
-
782 
-
783  // Capture radius for device
-
784  int d_radius = m_radius;
-
785 
-
786  // Averages over all the fields
-
787  //----------------------------------------------------------
-
788  for (int imf(0); imf < m_nvar; ++imf) {
-
789 
-
790  // Continue if no valid Qv pointer
-
791  if (!fields[imf]) continue;
-
792 
-
793 #ifdef _OPENMP
-
794 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
795 #endif
-
796  for (MFIter mfi(*fields[imf], TileNoZ()); mfi.isValid(); ++mfi) {
-
797  Box pbx = mfi.tilebox(); pbx.setSmall(2,0); pbx.setBig(2,0);
-
798 
-
799  auto mf_arr = fields[imf]->const_array(mfi);
-
800  auto ma_arr = averages[imf]->array(mfi);
-
801 
-
802  if (m_interp) {
-
803  const auto plo = geom.ProbLoArray();
-
804  const auto dx = geom.CellSizeArray();
-
805  const auto dxInv = geom.InvCellSizeArray();
-
806  const auto z_phys_arr = z_phys->const_array(mfi);
-
807  auto x_pos_arr = x_pos->array(mfi);
-
808  auto y_pos_arr = y_pos->array(mfi);
-
809  auto z_pos_arr = z_pos->array(mfi);
-
810  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
811  {
-
812  ma_arr(i,j,k) *= d_fact_old;
-
813 
-
814  Real met_h_zeta = Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
-
815  for (int lk(-d_radius); lk <= (d_radius); ++lk) {
-
816  for (int lj(-d_radius); lj <= (d_radius); ++lj) {
-
817  for (int li(-d_radius); li <= (d_radius); ++li) {
-
818  Real interp{0};
-
819  Real xp = x_pos_arr(i+li,j+lj,k);
-
820  Real yp = y_pos_arr(i+li,j+lj,k);
-
821  Real zp = z_pos_arr(i+li,j+lj,k) + met_h_zeta*lk*dx[2];
-
822  trilinear_interp_T(xp, yp, zp, &interp, mf_arr, z_phys_arr, plo, dxInv, 1);
-
823  Real val = denom * interp * d_fact_new;
-
824  ma_arr(i,j,k) += val;
-
825  }
-
826  }
-
827  }
-
828  });
-
829  } else {
-
830  auto k_arr = k_indx->const_array(mfi);
-
831  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
-
832  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
-
833  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
834  {
-
835  ma_arr(i,j,k) *= d_fact_old;
-
836 
-
837  int mk = k_arr(i,j,k);
-
838  int mj = j_arr ? j_arr(i,j,k) : j;
-
839  int mi = i_arr ? i_arr(i,j,k) : i;
-
840  for (int lk(mk-d_radius); lk <= (mk+d_radius); ++lk) {
-
841  for (int lj(mj-d_radius); lj <= (mj+d_radius); ++lj) {
-
842  for (int li(mi-d_radius); li <= (mi+d_radius); ++li) {
-
843  Real val = denom * mf_arr(li, lj, lk) * d_fact_new;
-
844  ma_arr(i,j,k) += val;
-
845  }
-
846  }
-
847  }
-
848  });
-
849  }
-
850  }
-
851 
-
852  // Fill interior ghost cells and any ghost cells outside a periodic domain
-
853  //***********************************************************************************
-
854  averages[imf]->FillBoundary(geom.periodicity());
-
855  }
-
856 
-
857  // Averages for the tangential velocity magnitude
-
858  //----------------------------------------------------------
-
859  {
-
860  int imf = 0;
-
861  int iavg = m_navg - 1;
-
862 
-
863 #ifdef _OPENMP
-
864 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
865 #endif
-
866  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi) {
-
867  Box pbx = mfi.tilebox(); pbx.setSmall(2,0); pbx.setBig(2,0);
-
868 
-
869  auto u_mf_arr = fields[imf]->const_array(mfi);
-
870  auto v_mf_arr = fields[imf+1]->const_array(mfi);
-
871  auto ma_arr = averages[iavg]->array(mfi);
-
872 
-
873  if (m_interp) {
-
874  const auto plo = geom.ProbLoArray();
-
875  const auto dx = geom.CellSizeArray();
-
876  const auto dxInv = geom.InvCellSizeArray();
-
877  const auto z_phys_arr = z_phys->const_array(mfi);
-
878  auto x_pos_arr = x_pos->array(mfi);
-
879  auto y_pos_arr = y_pos->array(mfi);
-
880  auto z_pos_arr = z_pos->array(mfi);
-
881  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
882  {
-
883  ma_arr(i,j,k) *= d_fact_old;
+
849 {
+
850  // Peel back the level
+
851  auto& fields = m_fields[lev];
+
852  auto& rot_fields = m_rot_fields[lev];
+
853  auto& averages = m_averages[lev];
+
854  const auto & geom = m_geom[lev];
+
855 
+
856  auto& z_phys = m_z_phys_nd[lev];
+
857  auto& x_pos = m_x_pos[lev];
+
858  auto& y_pos = m_y_pos[lev];
+
859  auto& z_pos = m_z_pos[lev];
+
860 
+
861  auto& i_indx = m_i_indx[lev];
+
862  auto& j_indx = m_j_indx[lev];
+
863  auto& k_indx = m_k_indx[lev];
+
864 
+
865  // Set factors for time averaging
+
866  Real d_fact_new, d_fact_old;
+
867  if (m_t_avg && m_t_init[lev]) {
+
868  d_fact_new = m_fact_new;
+
869  d_fact_old = m_fact_old;
+
870  } else {
+
871  d_fact_new = 1.0;
+
872  d_fact_old = 0.0;
+
873  }
+
874 
+
875  // Number of cells contained in the local average
+
876  const Real denom = 1.0 / (Real) m_ncell_region;
+
877 
+
878  // Capture radius for device
+
879  int d_radius = m_radius;
+
880 
+
881  // Averages over all the fields
+
882  //----------------------------------------------------------
+
883  for (int imf(0); imf < (m_nvar-1); ++imf) {
884 
-
885  Real met_h_zeta = Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
-
886  for (int lk(-d_radius); lk <= (d_radius); ++lk) {
-
887  for (int lj(-d_radius); lj <= (d_radius); ++lj) {
-
888  for (int li(-d_radius); li <= (d_radius); ++li) {
-
889  Real u_interp{0};
-
890  Real v_interp{0};
-
891  Real xp = x_pos_arr(i+li,j+lj,k);
-
892  Real yp = y_pos_arr(i+li,j+lj,k);
-
893  Real zp = z_pos_arr(i+li,j+lj,k) + met_h_zeta*lk*dx[2];
-
894  trilinear_interp_T(xp, yp, zp, &u_interp, u_mf_arr, z_phys_arr, plo, dxInv, 1);
-
895  trilinear_interp_T(xp, yp, zp, &v_interp, v_mf_arr, z_phys_arr, plo, dxInv, 1);
-
896  Real mag = std::sqrt(u_interp*u_interp + v_interp*v_interp);
-
897  Real val = denom * mag * d_fact_new;
-
898  ma_arr(i,j,k) += val;
-
899  }
-
900  }
-
901  }
-
902  });
-
903  } else {
-
904  auto k_arr = k_indx->const_array(mfi);
-
905  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
-
906  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
-
907  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
908  {
-
909  ma_arr(i,j,k) *= d_fact_old;
-
910 
-
911  int mk = k_arr(i,j,k);
-
912  int mj = j_arr ? j_arr(i,j,k) : j;
-
913  int mi = i_arr ? i_arr(i,j,k) : i;
-
914  for (int lk(mk-d_radius); lk <= (mk+d_radius); ++lk) {
-
915  for (int lj(mj-d_radius); lj <= (mj+d_radius); ++lj) {
-
916  for (int li(mi-d_radius); li <= (mi+d_radius); ++li) {
-
917  const Real u_val = 0.5 * (u_mf_arr(li,lj,lk) + u_mf_arr(li+1,lj ,lk));
-
918  const Real v_val = 0.5 * (v_mf_arr(li,lj,lk) + v_mf_arr(li ,lj+1,lk));
-
919  const Real mag = std::sqrt(u_val*u_val + v_val*v_val);
-
920  Real val = denom * mag * d_fact_new;
-
921  ma_arr(i,j,k) += val;
-
922  }
-
923  }
-
924  }
-
925  });
-
926  }
-
927 
-
928  // Fill interior ghost cells and any ghost cells outside a periodic domain
-
929  //***********************************************************************************
-
930  averages[iavg]->FillBoundary(geom.periodicity());
-
931  }
-
932  }
-
933 
-
934 
-
935  // Need to fill ghost cells outside the domain if not periodic
-
936  bool not_per_x = !(geom.periodicity().isPeriodic(0));
-
937  bool not_per_y = !(geom.periodicity().isPeriodic(1));
-
938  if (not_per_x || not_per_y) {
-
939  Box domain = geom.Domain();
-
940  for (int iavg(0); iavg < m_navg; ++iavg) {
-
941  IndexType ixt = averages[iavg]->boxArray().ixType();
-
942  Box ldomain = domain; ldomain.convert(ixt);
-
943  IntVect ng = averages[iavg]->nGrowVect(); ng[2]=0;
-
944 #ifdef _OPENMP
-
945 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
946 #endif
-
947  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi) {
-
948  Box gpbx = mfi.growntilebox(ng); gpbx.setSmall(2,0); gpbx.setBig(2,0);
-
949 
-
950  if (ldomain.contains(gpbx)) continue;
-
951 
-
952  auto ma_arr = averages[iavg]->array(mfi);
-
953 
-
954  int i_lo = ldomain.smallEnd(0); int i_hi = ldomain.bigEnd(0);
-
955  int j_lo = ldomain.smallEnd(1); int j_hi = ldomain.bigEnd(1);
-
956  ParallelFor(gpbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
957  {
-
958  int li, lj;
-
959  li = i < i_lo ? i_lo : i;
-
960  li = li > i_hi ? i_hi : li;
-
961  lj = j < j_lo ? j_lo : j;
-
962  lj = lj > j_hi ? j_hi : lj;
-
963 
-
964  ma_arr(i,j,k) = ma_arr(li,lj,k);
-
965  });
-
966  } // MFiter
-
967  } // iavg
-
968  } // Not periodic
-
969 }
+
885  // Continue if no valid Qv pointer
+
886  if (!fields[imf]) continue;
+
887 
+
888 #ifdef _OPENMP
+
889 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
890 #endif
+
891  for (MFIter mfi(*fields[imf], TileNoZ()); mfi.isValid(); ++mfi) {
+
892  Box pbx = mfi.tilebox(); pbx.setSmall(2,0); pbx.setBig(2,0);
+
893 
+
894  auto mf_arr = (m_rotate) ? rot_fields[imf]->const_array(mfi) :
+
895  fields[imf]->const_array(mfi);
+
896  auto ma_arr = averages[imf]->array(mfi);
+
897 
+
898  if (m_interp) {
+
899  const auto plo = geom.ProbLoArray();
+
900  const auto dx = geom.CellSizeArray();
+
901  const auto dxInv = geom.InvCellSizeArray();
+
902  const auto z_phys_arr = z_phys->const_array(mfi);
+
903  auto x_pos_arr = x_pos->array(mfi);
+
904  auto y_pos_arr = y_pos->array(mfi);
+
905  auto z_pos_arr = z_pos->array(mfi);
+
906  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
907  {
+
908  ma_arr(i,j,k) *= d_fact_old;
+
909 
+
910  Real met_h_zeta = Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
+
911  for (int lk(-d_radius); lk <= (d_radius); ++lk) {
+
912  for (int lj(-d_radius); lj <= (d_radius); ++lj) {
+
913  for (int li(-d_radius); li <= (d_radius); ++li) {
+
914  Real interp{0};
+
915  Real xp = x_pos_arr(i+li,j+lj,k);
+
916  Real yp = y_pos_arr(i+li,j+lj,k);
+
917  Real zp = z_pos_arr(i+li,j+lj,k) + met_h_zeta*lk*dx[2];
+
918  trilinear_interp_T(xp, yp, zp, &interp, mf_arr, z_phys_arr, plo, dxInv, 1);
+
919  Real val = denom * interp * d_fact_new;
+
920  ma_arr(i,j,k) += val;
+
921  }
+
922  }
+
923  }
+
924  });
+
925  } else {
+
926  auto k_arr = k_indx->const_array(mfi);
+
927  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
+
928  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
+
929  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
930  {
+
931  ma_arr(i,j,k) *= d_fact_old;
+
932 
+
933  int mk = k_arr(i,j,k);
+
934  int mj = j_arr ? j_arr(i,j,k) : j;
+
935  int mi = i_arr ? i_arr(i,j,k) : i;
+
936  for (int lk(mk-d_radius); lk <= (mk+d_radius); ++lk) {
+
937  for (int lj(mj-d_radius); lj <= (mj+d_radius); ++lj) {
+
938  for (int li(mi-d_radius); li <= (mi+d_radius); ++li) {
+
939  Real val = denom * mf_arr(li, lj, lk) * d_fact_new;
+
940  ma_arr(i,j,k) += val;
+
941  }
+
942  }
+
943  }
+
944  });
+
945  }
+
946  }
+
947 
+
948  // Fill interior ghost cells and any ghost cells outside a periodic domain
+
949  //***********************************************************************************
+
950  averages[imf]->FillBoundary(geom.periodicity());
+
951  }
+
952 
+
953  // Averages for the tangential velocity magnitude
+
954  //----------------------------------------------------------
+
955  {
+
956  int imf = 0;
+
957  int iavg = m_navg - 1;
+
958 
+
959 #ifdef _OPENMP
+
960 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
961 #endif
+
962  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi) {
+
963  Box pbx = mfi.tilebox(); pbx.setSmall(2,0); pbx.setBig(2,0);
+
964 
+
965  auto u_mf_arr = (m_rotate) ? rot_fields[imf ]->const_array(mfi) :
+
966  fields[imf ]->const_array(mfi);
+
967  auto v_mf_arr = (m_rotate) ? rot_fields[imf+1]->const_array(mfi) :
+
968  fields[imf+1]->const_array(mfi);
+
969  auto ma_arr = averages[iavg]->array(mfi);
+
970 
+
971  if (m_interp) {
+
972  const auto plo = geom.ProbLoArray();
+
973  const auto dx = geom.CellSizeArray();
+
974  const auto dxInv = geom.InvCellSizeArray();
+
975  const auto z_phys_arr = z_phys->const_array(mfi);
+
976  auto x_pos_arr = x_pos->array(mfi);
+
977  auto y_pos_arr = y_pos->array(mfi);
+
978  auto z_pos_arr = z_pos->array(mfi);
+
979  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
980  {
+
981  ma_arr(i,j,k) *= d_fact_old;
+
982 
+
983  Real met_h_zeta = Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
+
984  for (int lk(-d_radius); lk <= (d_radius); ++lk) {
+
985  for (int lj(-d_radius); lj <= (d_radius); ++lj) {
+
986  for (int li(-d_radius); li <= (d_radius); ++li) {
+
987  Real u_interp{0};
+
988  Real v_interp{0};
+
989  Real xp = x_pos_arr(i+li,j+lj,k);
+
990  Real yp = y_pos_arr(i+li,j+lj,k);
+
991  Real zp = z_pos_arr(i+li,j+lj,k) + met_h_zeta*lk*dx[2];
+
992  trilinear_interp_T(xp, yp, zp, &u_interp, u_mf_arr, z_phys_arr, plo, dxInv, 1);
+
993  trilinear_interp_T(xp, yp, zp, &v_interp, v_mf_arr, z_phys_arr, plo, dxInv, 1);
+
994  Real mag = std::sqrt(u_interp*u_interp + v_interp*v_interp);
+
995  Real val = denom * mag * d_fact_new;
+
996  ma_arr(i,j,k) += val;
+
997  }
+
998  }
+
999  }
+
1000  });
+
1001  } else {
+
1002  auto k_arr = k_indx->const_array(mfi);
+
1003  auto j_arr = j_indx ? j_indx->const_array(mfi) : Array4<const int> {};
+
1004  auto i_arr = i_indx ? i_indx->const_array(mfi) : Array4<const int> {};
+
1005  ParallelFor(pbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
1006  {
+
1007  ma_arr(i,j,k) *= d_fact_old;
+
1008 
+
1009  int mk = k_arr(i,j,k);
+
1010  int mj = j_arr ? j_arr(i,j,k) : j;
+
1011  int mi = i_arr ? i_arr(i,j,k) : i;
+
1012  for (int lk(mk-d_radius); lk <= (mk+d_radius); ++lk) {
+
1013  for (int lj(mj-d_radius); lj <= (mj+d_radius); ++lj) {
+
1014  for (int li(mi-d_radius); li <= (mi+d_radius); ++li) {
+
1015  const Real u_val = 0.5 * (u_mf_arr(li,lj,lk) + u_mf_arr(li+1,lj ,lk));
+
1016  const Real v_val = 0.5 * (v_mf_arr(li,lj,lk) + v_mf_arr(li ,lj+1,lk));
+
1017  const Real mag = std::sqrt(u_val*u_val + v_val*v_val);
+
1018  Real val = denom * mag * d_fact_new;
+
1019  ma_arr(i,j,k) += val;
+
1020  }
+
1021  }
+
1022  }
+
1023  });
+
1024  }
+
1025 
+
1026  // Fill interior ghost cells and any ghost cells outside a periodic domain
+
1027  //***********************************************************************************
+
1028  averages[iavg]->FillBoundary(geom.periodicity());
+
1029  }
+
1030  }
+
1031 
+
1032 
+
1033  // Need to fill ghost cells outside the domain if not periodic
+
1034  bool not_per_x = !(geom.periodicity().isPeriodic(0));
+
1035  bool not_per_y = !(geom.periodicity().isPeriodic(1));
+
1036  if (not_per_x || not_per_y) {
+
1037  Box domain = geom.Domain();
+
1038  for (int iavg(0); iavg < m_navg; ++iavg) {
+
1039  IndexType ixt = averages[iavg]->boxArray().ixType();
+
1040  Box ldomain = domain; ldomain.convert(ixt);
+
1041  IntVect ng = averages[iavg]->nGrowVect(); ng[2]=0;
+
1042 #ifdef _OPENMP
+
1043 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
1044 #endif
+
1045  for (MFIter mfi(*averages[iavg], TileNoZ()); mfi.isValid(); ++mfi) {
+
1046  Box gpbx = mfi.growntilebox(ng); gpbx.setSmall(2,0); gpbx.setBig(2,0);
+
1047 
+
1048  if (ldomain.contains(gpbx)) continue;
+
1049 
+
1050  auto ma_arr = averages[iavg]->array(mfi);
+
1051 
+
1052  int i_lo = ldomain.smallEnd(0); int i_hi = ldomain.bigEnd(0);
+
1053  int j_lo = ldomain.smallEnd(1); int j_hi = ldomain.bigEnd(1);
+
1054  ParallelFor(gpbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
1055  {
+
1056  int li, lj;
+
1057  li = i < i_lo ? i_lo : i;
+
1058  li = li > i_hi ? i_hi : li;
+
1059  lj = j < j_lo ? j_lo : j;
+
1060  lj = lj > j_hi ? j_hi : lj;
+
1061 
+
1062  ma_arr(i,j,k) = ma_arr(li,lj,k);
+
1063  });
+
1064  } // MFiter
+
1065  } // iavg
+
1066  } // Not periodic
+
1067 }
Compute_h_zeta_AtCellCenter
AMREX_FORCE_INLINE AMREX_GPU_DEVICE amrex::Real Compute_h_zeta_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:32
-
MOSTAverage::m_radius
int m_radius
Definition: MOSTAverage.H:191
-
MOSTAverage::m_ncell_region
int m_ncell_region
Definition: MOSTAverage.H:192
+
MOSTAverage::m_radius
int m_radius
Definition: MOSTAverage.H:196
+
MOSTAverage::m_ncell_region
int m_ncell_region
Definition: MOSTAverage.H:197

Referenced by compute_averages().

@@ -965,7 +987,7 @@

-
87 { return m_averages[lev][comp].get(); }
+
90 { return m_averages[lev][comp].get(); }

Referenced by ABLMost::get_mac_avg().

@@ -1002,8 +1024,8 @@

-
90 { return m_zref; }
-
MOSTAverage::m_zref
amrex::Real m_zref
Definition: MOSTAverage.H:174
+
93 { return m_zref; }
+
MOSTAverage::m_zref
amrex::Real m_zref
Definition: MOSTAverage.H:178

Referenced by ABLMost::get_zref().

@@ -1085,61 +1107,61 @@

Function to set K indices without terrain.

-
244 {
-
245  ParmParse pp(m_pp_prefix);
-
246  auto read_z = pp.query("most.zref",m_zref);
-
247  auto read_k = pp.queryarr("most.k_arr_in",m_k_in);
-
248 
-
249  // Default behavior is to use the first cell center
-
250  if (!read_z && !read_k) {
-
251  Real m_zlo = m_geom[0].ProbLo(2);
-
252  Real m_dz = m_geom[0].CellSize(2);
-
253  m_zref = m_zlo + 0.5 * m_dz;
-
254  Print() << "Reference height for MOST set to " << m_zref << std::endl;
-
255  read_z = true;
-
256  }
-
257 
-
258  // Specify z_ref & compute k_indx (z_ref takes precedence)
-
259  if (read_z) {
-
260  for (int lev(0); lev < m_maxlev; lev++) {
-
261  Real m_zlo = m_geom[lev].ProbLo(2);
-
262  Real m_zhi = m_geom[lev].ProbHi(2);
-
263  Real m_dz = m_geom[lev].CellSize(2);
-
264 
-
265  amrex::ignore_unused(m_zhi);
-
266 
-
267  AMREX_ASSERT_WITH_MESSAGE(m_zref >= m_zlo + 0.5 * m_dz,
-
268  "Query point must be past first z-cell!");
-
269 
-
270  AMREX_ASSERT_WITH_MESSAGE(m_zref <= m_zhi - 0.5 * m_dz,
-
271  "Query point must be below the last z-cell!");
-
272 
-
273  int lk = static_cast<int>(floor((m_zref - m_zlo) / m_dz - 0.5));
-
274 
-
275  m_zref = (lk + 0.5) * m_dz + m_zlo;
-
276 
-
277  AMREX_ALWAYS_ASSERT(lk >= m_radius);
-
278 
-
279  m_k_indx[lev]->setVal(lk);
-
280  }
-
281  // Specified k_indx & compute z_ref
-
282  } else if (read_k) {
-
283  for (int lev(0); lev < m_maxlev; lev++){
-
284  AMREX_ASSERT_WITH_MESSAGE(m_k_in[lev] >= m_radius,
-
285  "K index must be larger than averaging radius!");
-
286  m_k_indx[lev]->setVal(m_k_in[lev]);
-
287  }
-
288 
-
289  // TODO: check that z_ref is constant across levels
-
290  Real m_zlo = m_geom[0].ProbLo(2);
-
291  Real m_dz = m_geom[0].CellSize(2);
-
292  m_zref = ((Real)m_k_in[0] + 0.5) * m_dz + m_zlo;
-
293  }
-
294 }
+
332 {
+
333  ParmParse pp(m_pp_prefix);
+
334  auto read_z = pp.query("most.zref",m_zref);
+
335  auto read_k = pp.queryarr("most.k_arr_in",m_k_in);
+
336 
+
337  // Default behavior is to use the first cell center
+
338  if (!read_z && !read_k) {
+
339  Real m_zlo = m_geom[0].ProbLo(2);
+
340  Real m_dz = m_geom[0].CellSize(2);
+
341  m_zref = m_zlo + 0.5 * m_dz;
+
342  Print() << "Reference height for MOST set to " << m_zref << std::endl;
+
343  read_z = true;
+
344  }
+
345 
+
346  // Specify z_ref & compute k_indx (z_ref takes precedence)
+
347  if (read_z) {
+
348  for (int lev(0); lev < m_maxlev; lev++) {
+
349  Real m_zlo = m_geom[lev].ProbLo(2);
+
350  Real m_zhi = m_geom[lev].ProbHi(2);
+
351  Real m_dz = m_geom[lev].CellSize(2);
+
352 
+
353  amrex::ignore_unused(m_zhi);
+
354 
+
355  AMREX_ASSERT_WITH_MESSAGE(m_zref >= m_zlo + 0.5 * m_dz,
+
356  "Query point must be past first z-cell!");
+
357 
+
358  AMREX_ASSERT_WITH_MESSAGE(m_zref <= m_zhi - 0.5 * m_dz,
+
359  "Query point must be below the last z-cell!");
+
360 
+
361  int lk = static_cast<int>(floor((m_zref - m_zlo) / m_dz - 0.5));
+
362 
+
363  m_zref = (lk + 0.5) * m_dz + m_zlo;
+
364 
+
365  AMREX_ALWAYS_ASSERT(lk >= m_radius);
+
366 
+
367  m_k_indx[lev]->setVal(lk);
+
368  }
+
369  // Specified k_indx & compute z_ref
+
370  } else if (read_k) {
+
371  for (int lev(0); lev < m_maxlev; lev++){
+
372  AMREX_ASSERT_WITH_MESSAGE(m_k_in[lev] >= m_radius,
+
373  "K index must be larger than averaging radius!");
+
374  m_k_indx[lev]->setVal(m_k_in[lev]);
+
375  }
+
376 
+
377  // TODO: check that z_ref is constant across levels
+
378  Real m_zlo = m_geom[0].ProbLo(2);
+
379  Real m_dz = m_geom[0].CellSize(2);
+
380  m_zref = ((Real)m_k_in[0] + 0.5) * m_dz + m_zlo;
+
381  }
+
382 }
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: Microphysics_Utils.H:219
-
MOSTAverage::m_pp_prefix
std::string m_pp_prefix
Definition: MOSTAverage.H:175
-
MOSTAverage::m_maxlev
int m_maxlev
Definition: MOSTAverage.H:172
-
MOSTAverage::m_k_in
amrex::Vector< int > m_k_in
Definition: MOSTAverage.H:193
+
MOSTAverage::m_pp_prefix
std::string m_pp_prefix
Definition: MOSTAverage.H:179
+
MOSTAverage::m_maxlev
int m_maxlev
Definition: MOSTAverage.H:175
+
MOSTAverage::m_k_in
amrex::Vector< int > m_k_in
Definition: MOSTAverage.H:198
Here is the call graph for this function:
@@ -1167,55 +1189,55 @@

Function to set K indices with terrain.

-
303 {
-
304  ParmParse pp(m_pp_prefix);
-
305  auto read_z = pp.query("most.zref",m_zref);
-
306  auto read_k = pp.queryarr("most.k_arr_in",m_k_in);
-
307 
-
308  // No default behavior with terrain (we can't tell the difference between
-
309  // vertical grid stretching and true terrain)
-
310  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(read_z != read_k,
-
311  "Need to specify zref or k_arr_in for MOST");
-
312 
-
313  // Capture for device
-
314  Real d_zref = m_zref;
-
315  Real d_radius = m_radius;
-
316  amrex::ignore_unused(d_radius);
-
317 
-
318  // Specify z_ref & compute k_indx (z_ref takes precedence)
-
319  if (read_z) {
-
320  for (int lev(0); lev < m_maxlev; lev++) {
-
321  int kmax = m_geom[lev].Domain().bigEnd(2);
-
322  for (MFIter mfi(*m_k_indx[lev], TileNoZ()); mfi.isValid(); ++mfi) {
-
323  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
-
324  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
-
325  auto k_arr = m_k_indx[lev]->array(mfi);
-
326  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
327  {
-
328  k_arr(i,j,k) = 0;
-
329  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
-
330  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
-
331  Real z_target = z_bot_face + d_zref;
-
332  for (int lk(0); lk<=kmax; ++lk) {
-
333  Real z_lo = 0.25 * ( z_phys_arr(i,j ,lk ) + z_phys_arr(i+1,j ,lk )
-
334  + z_phys_arr(i,j+1,lk ) + z_phys_arr(i+1,j+1,lk ) );
-
335  Real z_hi = 0.25 * ( z_phys_arr(i,j ,lk+1) + z_phys_arr(i+1,j ,lk+1)
-
336  + z_phys_arr(i,j+1,lk+1) + z_phys_arr(i+1,j+1,lk+1) );
-
337  if (z_target > z_lo && z_target < z_hi){
-
338  AMREX_ASSERT_WITH_MESSAGE(lk >= d_radius,
-
339  "K index must be larger than averaging radius!");
-
340  k_arr(i,j,k) = lk;
-
341  break;
-
342  }
-
343  }
-
344  });
-
345  }
-
346  }
-
347  // Specified k_indx & compute z_ref
-
348  } else if (read_k) {
-
349  AMREX_ASSERT_WITH_MESSAGE(false, "Specified k-indx with terrain not implemented!");
-
350  }
-
351 }
+
391 {
+
392  ParmParse pp(m_pp_prefix);
+
393  auto read_z = pp.query("most.zref",m_zref);
+
394  auto read_k = pp.queryarr("most.k_arr_in",m_k_in);
+
395 
+
396  // No default behavior with terrain (we can't tell the difference between
+
397  // vertical grid stretching and true terrain)
+
398  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(read_z != read_k,
+
399  "Need to specify zref or k_arr_in for MOST");
+
400 
+
401  // Capture for device
+
402  Real d_zref = m_zref;
+
403  Real d_radius = m_radius;
+
404  amrex::ignore_unused(d_radius);
+
405 
+
406  // Specify z_ref & compute k_indx (z_ref takes precedence)
+
407  if (read_z) {
+
408  for (int lev(0); lev < m_maxlev; lev++) {
+
409  int kmax = m_geom[lev].Domain().bigEnd(2);
+
410  for (MFIter mfi(*m_k_indx[lev], TileNoZ()); mfi.isValid(); ++mfi) {
+
411  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
+
412  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
+
413  auto k_arr = m_k_indx[lev]->array(mfi);
+
414  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
415  {
+
416  k_arr(i,j,k) = 0;
+
417  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
+
418  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
+
419  Real z_target = z_bot_face + d_zref;
+
420  for (int lk(0); lk<=kmax; ++lk) {
+
421  Real z_lo = 0.25 * ( z_phys_arr(i,j ,lk ) + z_phys_arr(i+1,j ,lk )
+
422  + z_phys_arr(i,j+1,lk ) + z_phys_arr(i+1,j+1,lk ) );
+
423  Real z_hi = 0.25 * ( z_phys_arr(i,j ,lk+1) + z_phys_arr(i+1,j ,lk+1)
+
424  + z_phys_arr(i,j+1,lk+1) + z_phys_arr(i+1,j+1,lk+1) );
+
425  if (z_target > z_lo && z_target < z_hi){
+
426  AMREX_ASSERT_WITH_MESSAGE(lk >= d_radius,
+
427  "K index must be larger than averaging radius!");
+
428  k_arr(i,j,k) = lk;
+
429  break;
+
430  }
+
431  }
+
432  });
+
433  }
+
434  }
+
435  // Specified k_indx & compute z_ref
+
436  } else if (read_k) {
+
437  AMREX_ASSERT_WITH_MESSAGE(false, "Specified k-indx with terrain not implemented!");
+
438  }
+
439 }
Here is the call graph for this function:
@@ -1244,71 +1266,71 @@

Function to set I,J,K indices with terrain normals.

-
360 {
-
361  ParmParse pp(m_pp_prefix);
-
362  pp.get("most.zref",m_zref);
-
363 
-
364  // Capture for device
-
365  Real d_zref = m_zref;
-
366  Real d_radius = m_radius;
-
367 
-
368  for (int lev(0); lev < m_maxlev; lev++) {
-
369  int kmax = m_geom[lev].Domain().bigEnd(2);
-
370  const auto dxInv = m_geom[lev].InvCellSizeArray();
-
371  IntVect ng = m_k_indx[lev]->nGrowVect(); ng[2]=0;
-
372  for (MFIter mfi(*m_k_indx[lev], TileNoZ()); mfi.isValid(); ++mfi) {
-
373  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
-
374  Box gpbx = mfi.growntilebox(ng);
-
375  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
-
376  auto i_arr = m_i_indx[lev]->array(mfi);
-
377  auto j_arr = m_j_indx[lev]->array(mfi);
-
378  auto k_arr = m_k_indx[lev]->array(mfi);
-
379  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
380  {
-
381  // Elements of normal vector
-
382  Real met_h_xi = Compute_h_xi_AtCellCenter (i,j,k,dxInv,z_phys_arr);
-
383  Real met_h_eta = Compute_h_eta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
-
384  Real mag = std::sqrt(met_h_xi*met_h_xi + met_h_eta*met_h_eta + 1.0);
-
385 
-
386  // Unit-normal vector scaled by z_ref
-
387  Real delta_x = -met_h_xi/mag * d_zref;
-
388  Real delta_y = -met_h_eta/mag * d_zref;
-
389  Real delta_z = 1.0/mag * d_zref;
-
390 
-
391  // Compute i & j as displacements (no grid stretching)
-
392  int delta_i = static_cast<int>(std::round(delta_x*dxInv[0]));
-
393  int delta_j = static_cast<int>(std::round(delta_y*dxInv[1]));
-
394  int i_new = i + delta_i;
-
395  int j_new = j + delta_j;
-
396  i_arr(i,j,k) = i_new;
-
397  j_arr(i,j,k) = j_new;
-
398 
-
399  // Search for k (grid is stretched in z)
-
400  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
-
401  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
-
402  Real z_target = z_bot_face + delta_z;
-
403  for (int lk(0); lk<=kmax; ++lk) {
-
404  Real z_lo = 0.25 * ( z_phys_arr(i_new,j_new ,lk ) + z_phys_arr(i_new+1,j_new ,lk )
-
405  + z_phys_arr(i_new,j_new+1,lk ) + z_phys_arr(i_new+1,j_new+1,lk ) );
-
406  Real z_hi = 0.25 * ( z_phys_arr(i_new,j_new ,lk+1) + z_phys_arr(i_new+1,j_new ,lk+1)
-
407  + z_phys_arr(i_new,j_new+1,lk+1) + z_phys_arr(i_new+1,j_new+1,lk+1) );
-
408  if (z_target > z_lo && z_target < z_hi){
-
409  AMREX_ASSERT_WITH_MESSAGE(lk >= d_radius,
-
410  "K index must be larger than averaging radius!");
-
411  amrex::ignore_unused(d_radius);
-
412  k_arr(i,j,k) = lk;
-
413  break;
-
414  }
-
415  }
-
416 
-
417  // Destination cell must be contained on the current process!
-
418  amrex::ignore_unused(gpbx);
-
419  AMREX_ASSERT_WITH_MESSAGE(gpbx.contains(i_arr(i,j,k),j_arr(i,j,k),k_arr(i,j,k)),
-
420  "Query index outside of proc domain!");
-
421  });
-
422  }
-
423  }
-
424 }
+
448 {
+
449  ParmParse pp(m_pp_prefix);
+
450  pp.get("most.zref",m_zref);
+
451 
+
452  // Capture for device
+
453  Real d_zref = m_zref;
+
454  Real d_radius = m_radius;
+
455 
+
456  for (int lev(0); lev < m_maxlev; lev++) {
+
457  int kmax = m_geom[lev].Domain().bigEnd(2);
+
458  const auto dxInv = m_geom[lev].InvCellSizeArray();
+
459  IntVect ng = m_k_indx[lev]->nGrowVect(); ng[2]=0;
+
460  for (MFIter mfi(*m_k_indx[lev], TileNoZ()); mfi.isValid(); ++mfi) {
+
461  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
+
462  Box gpbx = mfi.growntilebox(ng);
+
463  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
+
464  auto i_arr = m_i_indx[lev]->array(mfi);
+
465  auto j_arr = m_j_indx[lev]->array(mfi);
+
466  auto k_arr = m_k_indx[lev]->array(mfi);
+
467  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
468  {
+
469  // Elements of normal vector
+
470  Real met_h_xi = Compute_h_xi_AtCellCenter (i,j,k,dxInv,z_phys_arr);
+
471  Real met_h_eta = Compute_h_eta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
+
472  Real mag = std::sqrt(met_h_xi*met_h_xi + met_h_eta*met_h_eta + 1.0);
+
473 
+
474  // Unit-normal vector scaled by z_ref
+
475  Real delta_x = -met_h_xi/mag * d_zref;
+
476  Real delta_y = -met_h_eta/mag * d_zref;
+
477  Real delta_z = 1.0/mag * d_zref;
+
478 
+
479  // Compute i & j as displacements (no grid stretching)
+
480  int delta_i = static_cast<int>(std::round(delta_x*dxInv[0]));
+
481  int delta_j = static_cast<int>(std::round(delta_y*dxInv[1]));
+
482  int i_new = i + delta_i;
+
483  int j_new = j + delta_j;
+
484  i_arr(i,j,k) = i_new;
+
485  j_arr(i,j,k) = j_new;
+
486 
+
487  // Search for k (grid is stretched in z)
+
488  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
+
489  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
+
490  Real z_target = z_bot_face + delta_z;
+
491  for (int lk(0); lk<=kmax; ++lk) {
+
492  Real z_lo = 0.25 * ( z_phys_arr(i_new,j_new ,lk ) + z_phys_arr(i_new+1,j_new ,lk )
+
493  + z_phys_arr(i_new,j_new+1,lk ) + z_phys_arr(i_new+1,j_new+1,lk ) );
+
494  Real z_hi = 0.25 * ( z_phys_arr(i_new,j_new ,lk+1) + z_phys_arr(i_new+1,j_new ,lk+1)
+
495  + z_phys_arr(i_new,j_new+1,lk+1) + z_phys_arr(i_new+1,j_new+1,lk+1) );
+
496  if (z_target > z_lo && z_target < z_hi){
+
497  AMREX_ASSERT_WITH_MESSAGE(lk >= d_radius,
+
498  "K index must be larger than averaging radius!");
+
499  amrex::ignore_unused(d_radius);
+
500  k_arr(i,j,k) = lk;
+
501  break;
+
502  }
+
503  }
+
504 
+
505  // Destination cell must be contained on the current process!
+
506  amrex::ignore_unused(gpbx);
+
507  AMREX_ASSERT_WITH_MESSAGE(gpbx.contains(i_arr(i,j,k),j_arr(i,j,k),k_arr(i,j,k)),
+
508  "Query index outside of proc domain!");
+
509  });
+
510  }
+
511  }
+
512 }
Compute_h_eta_AtCellCenter
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_eta_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:62
Compute_h_xi_AtCellCenter
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_xi_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:47
@@ -1341,59 +1363,59 @@

Function to set positions with terrain and normal vector.

-
479 {
-
480  ParmParse pp(m_pp_prefix);
-
481  pp.get("most.zref",m_zref);
-
482 
-
483  // Capture for device
-
484  Real d_zref = m_zref;
-
485 
-
486  for (int lev(0); lev < m_maxlev; lev++) {
-
487  RealVect base;
-
488  const auto dx = m_geom[lev].CellSizeArray();
-
489  const auto dxInv = m_geom[lev].InvCellSizeArray();
-
490  IntVect ng = m_x_pos[lev]->nGrowVect(); ng[2]=0;
-
491  for (MFIter mfi(*m_x_pos[lev], TileNoZ()); mfi.isValid(); ++mfi) {
-
492  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
-
493  Box gpbx = mfi.growntilebox(ng);
-
494  RealBox grb{gpbx,dx.data(),base.dataPtr()};
-
495 
-
496  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
-
497  auto x_pos_arr = m_x_pos[lev]->array(mfi);
-
498  auto y_pos_arr = m_y_pos[lev]->array(mfi);
-
499  auto z_pos_arr = m_z_pos[lev]->array(mfi);
-
500  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
501  {
-
502  // Elements of normal vector
-
503  Real met_h_xi = Compute_h_xi_AtCellCenter (i,j,k,dxInv,z_phys_arr);
-
504  Real met_h_eta = Compute_h_eta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
-
505  Real mag = std::sqrt(met_h_xi*met_h_xi + met_h_eta*met_h_eta + 1.0);
-
506 
-
507  // Unit-normal vector scaled by z_ref
-
508  Real delta_x = -met_h_xi/mag * d_zref;
-
509  Real delta_y = -met_h_eta/mag * d_zref;
-
510  Real delta_z = 1.0/mag * d_zref;
-
511 
-
512  // Position of the current node (indx:0,0,1)
-
513  Real x0 = ((Real) i + 0.5) * dx[0];
-
514  Real y0 = ((Real) j + 0.5) * dx[1];
-
515 
-
516  // Final position at end of vector
-
517  x_pos_arr(i,j,k) = x0 + delta_x;
-
518  y_pos_arr(i,j,k) = y0 + delta_y;
-
519  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
-
520  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
-
521  z_pos_arr(i,j,k) = z_bot_face + delta_z;
-
522 
-
523  // Destination position must be contained on the current process!
-
524  Real pos[] = {x_pos_arr(i,j,k),y_pos_arr(i,j,k),0.5*dx[2]};
-
525  amrex::ignore_unused(pos);
-
526  AMREX_ASSERT_WITH_MESSAGE( grb.contains(&pos[0]),
-
527  "Query point outside of proc domain!");
-
528  });
-
529  }
-
530  }
-
531 }
+
567 {
+
568  ParmParse pp(m_pp_prefix);
+
569  pp.get("most.zref",m_zref);
+
570 
+
571  // Capture for device
+
572  Real d_zref = m_zref;
+
573 
+
574  for (int lev(0); lev < m_maxlev; lev++) {
+
575  RealVect base;
+
576  const auto dx = m_geom[lev].CellSizeArray();
+
577  const auto dxInv = m_geom[lev].InvCellSizeArray();
+
578  IntVect ng = m_x_pos[lev]->nGrowVect(); ng[2]=0;
+
579  for (MFIter mfi(*m_x_pos[lev], TileNoZ()); mfi.isValid(); ++mfi) {
+
580  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
+
581  Box gpbx = mfi.growntilebox(ng);
+
582  RealBox grb{gpbx,dx.data(),base.dataPtr()};
+
583 
+
584  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
+
585  auto x_pos_arr = m_x_pos[lev]->array(mfi);
+
586  auto y_pos_arr = m_y_pos[lev]->array(mfi);
+
587  auto z_pos_arr = m_z_pos[lev]->array(mfi);
+
588  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
589  {
+
590  // Elements of normal vector
+
591  Real met_h_xi = Compute_h_xi_AtCellCenter (i,j,k,dxInv,z_phys_arr);
+
592  Real met_h_eta = Compute_h_eta_AtCellCenter(i,j,k,dxInv,z_phys_arr);
+
593  Real mag = std::sqrt(met_h_xi*met_h_xi + met_h_eta*met_h_eta + 1.0);
+
594 
+
595  // Unit-normal vector scaled by z_ref
+
596  Real delta_x = -met_h_xi/mag * d_zref;
+
597  Real delta_y = -met_h_eta/mag * d_zref;
+
598  Real delta_z = 1.0/mag * d_zref;
+
599 
+
600  // Position of the current node (indx:0,0,1)
+
601  Real x0 = ((Real) i + 0.5) * dx[0];
+
602  Real y0 = ((Real) j + 0.5) * dx[1];
+
603 
+
604  // Final position at end of vector
+
605  x_pos_arr(i,j,k) = x0 + delta_x;
+
606  y_pos_arr(i,j,k) = y0 + delta_y;
+
607  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
+
608  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
+
609  z_pos_arr(i,j,k) = z_bot_face + delta_z;
+
610 
+
611  // Destination position must be contained on the current process!
+
612  Real pos[] = {x_pos_arr(i,j,k),y_pos_arr(i,j,k),0.5*dx[2]};
+
613  amrex::ignore_unused(pos);
+
614  AMREX_ASSERT_WITH_MESSAGE( grb.contains(&pos[0]),
+
615  "Query point outside of proc domain!");
+
616  });
+
617  }
+
618  }
+
619 }
Here is the call graph for this function:
@@ -1424,43 +1446,43 @@

Function to compute normalization for plane average.

-
199 {
-
200  // Cells per plane and temp avg storage
-
201  m_ncell_plane.resize(m_maxlev);
-
202  m_plane_average.resize(m_maxlev);
-
203 
-
204  for (int lev(0); lev < m_maxlev; lev++) {
-
205  // Num components, plane avg, cells per plane
-
206  Array<int,AMREX_SPACEDIM> is_per = {0,0,0};
-
207  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
-
208  if (m_geom[lev].isPeriodic(idim)) is_per[idim] = 1;
-
209  }
-
210  Box domain = m_geom[lev].Domain();
-
211  m_ncell_plane[lev].resize(m_navg);
-
212  m_plane_average[lev].resize(m_navg);
-
213  for (int iavg(0); iavg < m_navg; ++iavg) {
-
214  // Convert domain to current index type
-
215  IndexType ixt = m_averages[lev][iavg]->boxArray().ixType();
-
216  domain.convert(ixt);
-
217  IntVect dom_lo(domain.loVect());
-
218  IntVect dom_hi(domain.hiVect());
-
219 
-
220  m_plane_average[lev][iavg] = 0.0;
-
221 
-
222  m_ncell_plane[lev][iavg] = 1;
-
223  for (int idim(0); idim < AMREX_SPACEDIM; ++idim) {
-
224  if (idim != 2) {
-
225  if (ixt.nodeCentered(idim) && is_per[idim]) {
-
226  m_ncell_plane[lev][iavg] *= (dom_hi[idim] - dom_lo[idim]);
-
227  } else {
-
228  m_ncell_plane[lev][iavg] *= (dom_hi[idim] - dom_lo[idim] + 1);
-
229  }
-
230  }
-
231  } // idim
-
232  } // iavg
-
233  } // lev
-
234 
-
235 }
+
287 {
+
288  // Cells per plane and temp avg storage
+
289  m_ncell_plane.resize(m_maxlev);
+
290  m_plane_average.resize(m_maxlev);
+
291 
+
292  for (int lev(0); lev < m_maxlev; lev++) {
+
293  // Num components, plane avg, cells per plane
+
294  Array<int,AMREX_SPACEDIM> is_per = {0,0,0};
+
295  for (int idim(0); idim < AMREX_SPACEDIM-1; ++idim) {
+
296  if (m_geom[lev].isPeriodic(idim)) is_per[idim] = 1;
+
297  }
+
298  Box domain = m_geom[lev].Domain();
+
299  m_ncell_plane[lev].resize(m_navg);
+
300  m_plane_average[lev].resize(m_navg);
+
301  for (int iavg(0); iavg < m_navg; ++iavg) {
+
302  // Convert domain to current index type
+
303  IndexType ixt = m_averages[lev][iavg]->boxArray().ixType();
+
304  domain.convert(ixt);
+
305  IntVect dom_lo(domain.loVect());
+
306  IntVect dom_hi(domain.hiVect());
+
307 
+
308  m_plane_average[lev][iavg] = 0.0;
+
309 
+
310  m_ncell_plane[lev][iavg] = 1;
+
311  for (int idim(0); idim < AMREX_SPACEDIM; ++idim) {
+
312  if (idim != 2) {
+
313  if (ixt.nodeCentered(idim) && is_per[idim]) {
+
314  m_ncell_plane[lev][iavg] *= (dom_hi[idim] - dom_lo[idim]);
+
315  } else {
+
316  m_ncell_plane[lev][iavg] *= (dom_hi[idim] - dom_lo[idim] + 1);
+
317  }
+
318  }
+
319  } // idim
+
320  } // iavg
+
321  } // lev
+
322 
+
323 }

@@ -1486,8 +1508,103 @@

-
48  {m_ncell_region = (2 * m_radius + 1) * (2 * m_radius + 1) * (2 * m_radius + 1);}
+
51  {m_ncell_region = (2 * m_radius + 1) * (2 * m_radius + 1) * (2 * m_radius + 1);}
+
+

+ +

◆ set_rotated_fields()

+ +
+
+

 
void update_field_ptrs (int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim)
 
void set_rotated_fields (int lev)
 
void set_plane_normalization ()
 
void set_region_normalization ()
 
amrex::Vector< amrex::MultiFab * > m_z_phys_nd
 
int m_nvar {4}
int m_nvar {5}
 
int m_navg {5}
 
 
int m_policy {0}
 
bool m_rotate {false}
 
amrex::Real m_zref {10.0}
 
std::string m_pp_prefix {"erf"}
 
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_averages
 
amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab > > > m_rot_fields
 
amrex::Vector< amrex::Vector< int > > m_ncell_plane
 
amrex::Vector< amrex::Vector< amrex::Real > > m_plane_average
+ + + + + + + +
void MOSTAverage::set_rotated_fields (int lev)
+
+

Function to set the rotated velocities.

+
228 {
+
229  // Peel back the level
+
230  auto& fields = m_fields[lev];
+
231  auto& rot_fields = m_rot_fields[lev];
+
232  auto z_phys_nd = m_z_phys_nd[lev];
+
233 
+
234  // Inverse grid size
+
235  const auto dxInv = m_geom[lev].InvCellSizeArray();
+
236 
+
237  // Single MFIter over CC data
+
238  int imf_cc = 2;
+
239 
+
240  // Populate rotated U & V for terrain
+
241 #ifdef _OPENMP
+
242 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
243 #endif
+
244  for (MFIter mfi(*fields[imf_cc], TileNoZ()); mfi.isValid(); ++mfi) {
+
245  Box ubx = mfi.tilebox(IntVect(1,0,0));
+
246  Box vbx = mfi.tilebox(IntVect(0,1,0));
+
247 
+
248  const Array4<const Real>& z_phys_arr = z_phys_nd->const_array(mfi);
+
249 
+
250  const Array4<const Real>& u_arr = fields[0]->const_array(mfi);
+
251  const Array4<const Real>& v_arr = fields[1]->const_array(mfi);
+
252  const Array4<const Real>& w_arr = fields[4]->const_array(mfi);
+
253 
+
254  const Array4<Real>& u_rot_arr = rot_fields[0]->array(mfi);
+
255  const Array4<Real>& v_rot_arr = rot_fields[1]->array(mfi);
+
256 
+
257  // U rotated magnitude
+
258  ParallelFor(ubx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
259  {
+
260  // Elements of first tangent vector
+
261  Real met_h_xi = Compute_h_xi_AtIface(i,j,k,dxInv,z_phys_arr);
+
262  u_rot_arr(i,j,k) = (u_arr(i,j,k) + met_h_xi*w_arr(i,j,k))
+
263  / std::sqrt(met_h_xi*met_h_xi + 1.0);
+
264  });
+
265 
+
266  // V rotated magnitude
+
267  ParallelFor(vbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
268  {
+
269  // Elements of second tangent vector
+
270  Real met_h_eta = Compute_h_eta_AtJface(i,j,k,dxInv,z_phys_arr);
+
271  v_rot_arr(i,j,k) = (v_arr(i,j,k) + met_h_eta*w_arr(i,j,k))
+
272  / std::sqrt(met_h_eta*met_h_eta + 1.0);
+
273  });
+
274  }
+
275 
+
276  // Direct copy of other scalar variables
+
277  MultiFab::Copy(*rot_fields[2],*fields[2],0,0,1,rot_fields[2]->nGrowVect());
+
278  if (fields[3]) MultiFab::Copy(*rot_fields[3],*fields[3],0,0,1,rot_fields[3]->nGrowVect());
+
279 }
+
Compute_h_xi_AtIface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_xi_AtIface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:94
+
Compute_h_eta_AtJface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_eta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:151
+
+

Referenced by compute_averages().

+
+Here is the call graph for this function:
+
+
+ + + + + + +
+
+Here is the caller graph for this function:
+
+
+ + + + +
+
@@ -1505,44 +1622,44 @@

Function to set positions with terrain and e_z vector.

-
433 {
-
434  ParmParse pp(m_pp_prefix);
-
435  pp.get("most.zref",m_zref);
-
436 
-
437  // Capture for device
-
438  Real d_zref = m_zref;
-
439 
-
440  for (int lev(0); lev < m_maxlev; lev++) {
-
441  RealVect base;
-
442  const auto dx = m_geom[lev].CellSizeArray();
-
443  IntVect ng = m_x_pos[lev]->nGrowVect(); ng[2]=0;
-
444  for (MFIter mfi(*m_x_pos[lev], TileNoZ()); mfi.isValid(); ++mfi) {
-
445  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
-
446  Box gpbx = mfi.growntilebox(ng);
-
447  RealBox grb{gpbx,dx.data(),base.dataPtr()};
-
448 
-
449  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
-
450  auto x_pos_arr = m_x_pos[lev]->array(mfi);
-
451  auto y_pos_arr = m_y_pos[lev]->array(mfi);
-
452  auto z_pos_arr = m_z_pos[lev]->array(mfi);
-
453  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
454  {
-
455  // Final position at end of vector
-
456  x_pos_arr(i,j,k) = ((Real) i + 0.5) * dx[0];
-
457  y_pos_arr(i,j,k) = ((Real) j + 0.5) * dx[1];
-
458  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
-
459  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
-
460  z_pos_arr(i,j,k) = z_bot_face + d_zref;
-
461 
-
462  // Destination position must be contained on the current process!
-
463  Real pos[] = {x_pos_arr(i,j,k),y_pos_arr(i,j,k),0.5*dx[2]};
-
464  amrex::ignore_unused(pos);
-
465  AMREX_ASSERT_WITH_MESSAGE( grb.contains(&pos[0]),
-
466  "Query point outside of proc domain!");
-
467  });
-
468  }
-
469  }
-
470 }
+
521 {
+
522  ParmParse pp(m_pp_prefix);
+
523  pp.get("most.zref",m_zref);
+
524 
+
525  // Capture for device
+
526  Real d_zref = m_zref;
+
527 
+
528  for (int lev(0); lev < m_maxlev; lev++) {
+
529  RealVect base;
+
530  const auto dx = m_geom[lev].CellSizeArray();
+
531  IntVect ng = m_x_pos[lev]->nGrowVect(); ng[2]=0;
+
532  for (MFIter mfi(*m_x_pos[lev], TileNoZ()); mfi.isValid(); ++mfi) {
+
533  Box npbx = mfi.tilebox(IntVect(1,1,0),IntVect(1,1,0));
+
534  Box gpbx = mfi.growntilebox(ng);
+
535  RealBox grb{gpbx,dx.data(),base.dataPtr()};
+
536 
+
537  const auto z_phys_arr = m_z_phys_nd[lev]->const_array(mfi);
+
538  auto x_pos_arr = m_x_pos[lev]->array(mfi);
+
539  auto y_pos_arr = m_y_pos[lev]->array(mfi);
+
540  auto z_pos_arr = m_z_pos[lev]->array(mfi);
+
541  ParallelFor(npbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
542  {
+
543  // Final position at end of vector
+
544  x_pos_arr(i,j,k) = ((Real) i + 0.5) * dx[0];
+
545  y_pos_arr(i,j,k) = ((Real) j + 0.5) * dx[1];
+
546  Real z_bot_face = 0.25 * ( z_phys_arr(i ,j ,k) + z_phys_arr(i+1,j ,k)
+
547  + z_phys_arr(i ,j+1,k) + z_phys_arr(i+1,j+1,k) );
+
548  z_pos_arr(i,j,k) = z_bot_face + d_zref;
+
549 
+
550  // Destination position must be contained on the current process!
+
551  Real pos[] = {x_pos_arr(i,j,k),y_pos_arr(i,j,k),0.5*dx[2]};
+
552  amrex::ignore_unused(pos);
+
553  AMREX_ASSERT_WITH_MESSAGE( grb.contains(&pos[0]),
+
554  "Query point outside of proc domain!");
+
555  });
+
556  }
+
557  }
+
558 }
Here is the call graph for this function:
@@ -1645,51 +1762,51 @@

114  {
-
115  // Search to get z/k
-
116  bool found = false;
-
117  amrex::Real zval= 0.0;
-
118  int kmax = ubound(z_arr).z;
-
119  int i_new = (int) (xp * dxi[0] - 0.5);
-
120  int j_new = (int) (yp * dxi[1] - 0.5);
-
121  amrex::Real z_target = zp;
-
122  for (int lk(0); lk<kmax; ++lk) {
-
123  amrex::Real z_lo = 0.25 * ( z_arr(i_new,j_new ,lk ) + z_arr(i_new+1,j_new ,lk )
-
124  + z_arr(i_new,j_new+1,lk ) + z_arr(i_new+1,j_new+1,lk ) );
-
125  amrex::Real z_hi = 0.25 * ( z_arr(i_new,j_new ,lk+1) + z_arr(i_new+1,j_new ,lk+1)
-
126  + z_arr(i_new,j_new+1,lk+1) + z_arr(i_new+1,j_new+1,lk+1) );
-
127  if (z_target > z_lo && z_target < z_hi){
-
128  found = true;
-
129  zval = (amrex::Real) lk + ((z_target - z_lo) / (z_hi - z_lo)) + 0.5;
-
130  break;
-
131  }
-
132  }
-
133 
-
134  amrex::ignore_unused(found);
-
135  AMREX_ASSERT_WITH_MESSAGE(found, "MOSTAverage: Height above terrain not found, try increasing z_ref!");
+
117  {
+
118  // Search to get z/k
+
119  bool found = false;
+
120  amrex::Real zval= 0.0;
+
121  int kmax = ubound(z_arr).z;
+
122  int i_new = (int) (xp * dxi[0] - 0.5);
+
123  int j_new = (int) (yp * dxi[1] - 0.5);
+
124  amrex::Real z_target = zp;
+
125  for (int lk(0); lk<kmax; ++lk) {
+
126  amrex::Real z_lo = 0.25 * ( z_arr(i_new,j_new ,lk ) + z_arr(i_new+1,j_new ,lk )
+
127  + z_arr(i_new,j_new+1,lk ) + z_arr(i_new+1,j_new+1,lk ) );
+
128  amrex::Real z_hi = 0.25 * ( z_arr(i_new,j_new ,lk+1) + z_arr(i_new+1,j_new ,lk+1)
+
129  + z_arr(i_new,j_new+1,lk+1) + z_arr(i_new+1,j_new+1,lk+1) );
+
130  if (z_target > z_lo && z_target < z_hi){
+
131  found = true;
+
132  zval = (amrex::Real) lk + ((z_target - z_lo) / (z_hi - z_lo)) + 0.5;
+
133  break;
+
134  }
+
135  }
136 
-
137  const amrex::RealVect lx((xp - plo[0])*dxi[0] + 0.5,
-
138  (yp - plo[1])*dxi[1] + 0.5,
-
139  zval);
-
140 
-
141  const amrex::IntVect ijk = lx.floor();
-
142 
-
143  int i = ijk[0]; int j = ijk[1]; int k = ijk[2];
-
144 
-
145  // Weights
-
146  const amrex::RealVect sx_hi = lx - ijk;
-
147  const amrex::RealVect sx_lo = 1.0 - sx_hi;
-
148 
-
149  for (int n = 0; n < interp_comp; n++)
-
150  interp_vals[n] = sx_lo[0]*sx_lo[1]*sx_lo[2]*interp_array(i-1, j-1, k-1,n) +
-
151  sx_lo[0]*sx_lo[1]*sx_hi[2]*interp_array(i-1, j-1, k ,n) +
-
152  sx_lo[0]*sx_hi[1]*sx_lo[2]*interp_array(i-1, j , k-1,n) +
-
153  sx_lo[0]*sx_hi[1]*sx_hi[2]*interp_array(i-1, j , k ,n) +
-
154  sx_hi[0]*sx_lo[1]*sx_lo[2]*interp_array(i , j-1, k-1,n) +
-
155  sx_hi[0]*sx_lo[1]*sx_hi[2]*interp_array(i , j-1, k ,n) +
-
156  sx_hi[0]*sx_hi[1]*sx_lo[2]*interp_array(i , j , k-1,n) +
-
157  sx_hi[0]*sx_hi[1]*sx_hi[2]*interp_array(i , j , k ,n);
-
158  }
+
137  amrex::ignore_unused(found);
+
138  AMREX_ASSERT_WITH_MESSAGE(found, "MOSTAverage: Height above terrain not found, try increasing z_ref!");
+
139 
+
140  const amrex::RealVect lx((xp - plo[0])*dxi[0] + 0.5,
+
141  (yp - plo[1])*dxi[1] + 0.5,
+
142  zval);
+
143 
+
144  const amrex::IntVect ijk = lx.floor();
+
145 
+
146  int i = ijk[0]; int j = ijk[1]; int k = ijk[2];
+
147 
+
148  // Weights
+
149  const amrex::RealVect sx_hi = lx - ijk;
+
150  const amrex::RealVect sx_lo = 1.0 - sx_hi;
+
151 
+
152  for (int n = 0; n < interp_comp; n++)
+
153  interp_vals[n] = sx_lo[0]*sx_lo[1]*sx_lo[2]*interp_array(i-1, j-1, k-1,n) +
+
154  sx_lo[0]*sx_lo[1]*sx_hi[2]*interp_array(i-1, j-1, k ,n) +
+
155  sx_lo[0]*sx_hi[1]*sx_lo[2]*interp_array(i-1, j , k-1,n) +
+
156  sx_lo[0]*sx_hi[1]*sx_hi[2]*interp_array(i-1, j , k ,n) +
+
157  sx_hi[0]*sx_lo[1]*sx_lo[2]*interp_array(i , j-1, k-1,n) +
+
158  sx_hi[0]*sx_lo[1]*sx_hi[2]*interp_array(i , j-1, k ,n) +
+
159  sx_hi[0]*sx_hi[1]*sx_lo[2]*interp_array(i , j , k-1,n) +
+
160  sx_hi[0]*sx_hi[1]*sx_hi[2]*interp_array(i , j , k ,n);
+
161  }

Referenced by compute_plane_averages(), and compute_region_averages().

@@ -1752,13 +1869,15 @@

185 {
-
186  m_fields[lev][0] = &vars_old[lev][Vars::xvel];
-
187  m_fields[lev][1] = &vars_old[lev][Vars::yvel];
-
188  m_fields[lev][2] = Theta_prim[lev].get();
-
189  m_fields[lev][3] = Qv_prim[lev].get();
-
190 }
+
213 {
+
214  m_fields[lev][0] = &vars_old[lev][Vars::xvel];
+
215  m_fields[lev][1] = &vars_old[lev][Vars::yvel];
+
216  m_fields[lev][2] = Theta_prim[lev].get();
+
217  m_fields[lev][3] = Qv_prim[lev].get();
+
218  m_fields[lev][4] = &vars_old[lev][Vars::zvel];
+
219 }
Vars::xvel
@ xvel
Definition: IndexDefines.H:100
+
Vars::zvel
@ zvel
Definition: IndexDefines.H:102
Vars::yvel
@ yvel
Definition: IndexDefines.H:101

Referenced by ABLMost::update_mac_ptrs().

@@ -1796,37 +1915,37 @@

1097 {
-
1098  // Peel back the level
-
1099  auto& averages = m_averages[lev];
-
1100 
-
1101  int navg = m_navg - 1;
-
1102 
-
1103  std::ofstream ofile;
-
1104  ofile.open ("MOST_averages.txt");
-
1105  ofile << "Averages computed via MOSTAverages class:\n";
-
1106 
-
1107  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
-
1108  Box bx = mfi.tilebox(); bx.setBig(2,0);
-
1109  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
-
1110  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
-
1111 
-
1112  for (int j(jl); j <= ju; ++j) {
-
1113  for (int i(il); i <= iu; ++i) {
-
1114  ofile << "(I,J): " << "(" << i << "," << j << ")" << "\n";
-
1115  int k = 0;
-
1116  for (int iavg(0); iavg <= navg; ++iavg) {
-
1117  auto mf_arr = averages[iavg]->array(mfi);
-
1118  ofile << "iavg val: "
-
1119  << iavg << ' '
-
1120  << mf_arr(i,j,k) << "\n";
-
1121  }
-
1122  ofile << "\n";
-
1123  }
-
1124  }
-
1125  }
-
1126  ofile.close();
-
1127 }
+
1195 {
+
1196  // Peel back the level
+
1197  auto& averages = m_averages[lev];
+
1198 
+
1199  int navg = m_navg - 1;
+
1200 
+
1201  std::ofstream ofile;
+
1202  ofile.open ("MOST_averages.txt");
+
1203  ofile << "Averages computed via MOSTAverages class:\n";
+
1204 
+
1205  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
+
1206  Box bx = mfi.tilebox(); bx.setBig(2,0);
+
1207  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
+
1208  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
+
1209 
+
1210  for (int j(jl); j <= ju; ++j) {
+
1211  for (int i(il); i <= iu; ++i) {
+
1212  ofile << "(I,J): " << "(" << i << "," << j << ")" << "\n";
+
1213  int k = 0;
+
1214  for (int iavg(0); iavg <= navg; ++iavg) {
+
1215  auto mf_arr = averages[iavg]->array(mfi);
+
1216  ofile << "iavg val: "
+
1217  << iavg << ' '
+
1218  << mf_arr(i,j,k) << "\n";
+
1219  }
+
1220  ofile << "\n";
+
1221  }
+
1222  }
+
1223  }
+
1224  ofile.close();
+
1225 }
Here is the call graph for this function:
@@ -1861,36 +1980,36 @@

979 {
-
980  // Peel back the level
-
981  auto& averages = m_averages[lev];
-
982  auto& k_indx = m_k_indx[lev];
-
983 
-
984  int navg = m_navg - 1;
-
985 
-
986  std::ofstream ofile;
-
987  ofile.open ("MOST_k_indices.txt");
-
988  ofile << "K indices used to compute averages via MOSTAverages class:\n";
-
989 
-
990  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
-
991  Box bx = mfi.tilebox(); bx.setBig(2,0);
-
992  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
-
993  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
-
994 
-
995  auto k_arr = k_indx->array(mfi);
-
996 
-
997  for (int j(jl); j <= ju; ++j) {
-
998  for (int i(il); i <= iu; ++i) {
-
999  ofile << "(I,J): " << "(" << i << "," << j << ")" << "\n";
-
1000  int k = 0;
-
1001  ofile << "K_ind: "
-
1002  << k_arr(i,j,k) << "\n";
-
1003  ofile << "\n";
-
1004  }
-
1005  }
-
1006  }
-
1007  ofile.close();
-
1008 }
+
1077 {
+
1078  // Peel back the level
+
1079  auto& averages = m_averages[lev];
+
1080  auto& k_indx = m_k_indx[lev];
+
1081 
+
1082  int navg = m_navg - 1;
+
1083 
+
1084  std::ofstream ofile;
+
1085  ofile.open ("MOST_k_indices.txt");
+
1086  ofile << "K indices used to compute averages via MOSTAverages class:\n";
+
1087 
+
1088  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
+
1089  Box bx = mfi.tilebox(); bx.setBig(2,0);
+
1090  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
+
1091  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
+
1092 
+
1093  auto k_arr = k_indx->array(mfi);
+
1094 
+
1095  for (int j(jl); j <= ju; ++j) {
+
1096  for (int i(il); i <= iu; ++i) {
+
1097  ofile << "(I,J): " << "(" << i << "," << j << ")" << "\n";
+
1098  int k = 0;
+
1099  ofile << "K_ind: "
+
1100  << k_arr(i,j,k) << "\n";
+
1101  ofile << "\n";
+
1102  }
+
1103  }
+
1104  }
+
1105  ofile.close();
+
1106 }
Here is the call graph for this function:
@@ -1925,45 +2044,45 @@

1018 {
-
1019  // Peel back the level
-
1020  auto& averages = m_averages[lev];
-
1021  auto& k_indx = m_k_indx[lev];
-
1022  auto& j_indx = m_j_indx[lev];
-
1023  auto& i_indx = m_i_indx[lev];
-
1024 
-
1025  int navg = m_navg - 1;
-
1026 
-
1027  std::ofstream ofile;
-
1028  ofile.open ("MOST_ijk_indices.txt");
-
1029  ofile << "IJK indices used to compute averages via MOSTAverages class:\n";
-
1030 
-
1031  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
-
1032  Box bx = mfi.tilebox(); bx.setBig(2,0);
-
1033  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
-
1034  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
-
1035 
-
1036  auto k_arr = k_indx->array(mfi);
-
1037  auto j_arr = j_indx ? j_indx->array(mfi) : Array4<int> {};
-
1038  auto i_arr = i_indx ? i_indx->array(mfi) : Array4<int> {};
-
1039 
-
1040  for (int j(jl); j <= ju; ++j) {
-
1041  for (int i(il); i <= iu; ++i) {
-
1042  ofile << "(I1,J1,K1): " << "(" << i << "," << j << "," << 0 << ")" << "\n";
-
1043 
-
1044  int k = 0;
-
1045  int km = k_arr(i,j,k);
-
1046  int jm = j_arr ? j_arr(i,j,k) : j;
-
1047  int im = i_arr ? i_arr(i,j,k) : i;
-
1048 
-
1049  ofile << "(I2,J2,K2): "
-
1050  << "(" << im << "," << jm << "," << km << ")" << "\n";
-
1051  ofile << "\n";
-
1052  }
-
1053  }
-
1054  }
-
1055  ofile.close();
-
1056 }
+
1116 {
+
1117  // Peel back the level
+
1118  auto& averages = m_averages[lev];
+
1119  auto& k_indx = m_k_indx[lev];
+
1120  auto& j_indx = m_j_indx[lev];
+
1121  auto& i_indx = m_i_indx[lev];
+
1122 
+
1123  int navg = m_navg - 1;
+
1124 
+
1125  std::ofstream ofile;
+
1126  ofile.open ("MOST_ijk_indices.txt");
+
1127  ofile << "IJK indices used to compute averages via MOSTAverages class:\n";
+
1128 
+
1129  for (MFIter mfi(*averages[navg], TileNoZ()); mfi.isValid(); ++mfi) {
+
1130  Box bx = mfi.tilebox(); bx.setBig(2,0);
+
1131  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
+
1132  int jl = bx.smallEnd(1); int ju = bx.bigEnd(1);
+
1133 
+
1134  auto k_arr = k_indx->array(mfi);
+
1135  auto j_arr = j_indx ? j_indx->array(mfi) : Array4<int> {};
+
1136  auto i_arr = i_indx ? i_indx->array(mfi) : Array4<int> {};
+
1137 
+
1138  for (int j(jl); j <= ju; ++j) {
+
1139  for (int i(il); i <= iu; ++i) {
+
1140  ofile << "(I1,J1,K1): " << "(" << i << "," << j << "," << 0 << ")" << "\n";
+
1141 
+
1142  int k = 0;
+
1143  int km = k_arr(i,j,k);
+
1144  int jm = j_arr ? j_arr(i,j,k) : j;
+
1145  int im = i_arr ? i_arr(i,j,k) : i;
+
1146 
+
1147  ofile << "(I2,J2,K2): "
+
1148  << "(" << im << "," << jm << "," << km << ")" << "\n";
+
1149  ofile << "\n";
+
1150  }
+
1151  }
+
1152  }
+
1153  ofile.close();
+
1154 }
Here is the call graph for this function:
@@ -2009,27 +2128,27 @@

1067 {
-
1068  // Peel back the level
-
1069  auto& x_pos_mf = m_x_pos[lev];
-
1070  auto& z_pos_mf = m_z_pos[lev];
-
1071 
-
1072  std::ofstream ofile;
-
1073  ofile.open ("MOST_xz_positions.txt");
-
1074 
-
1075  for (MFIter mfi(*x_pos_mf, TileNoZ()); mfi.isValid(); ++mfi) {
-
1076  Box bx = mfi.tilebox(); bx.setBig(2,0);
-
1077  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
-
1078 
-
1079  auto x_pos_arr = x_pos_mf->array(mfi);
-
1080  auto z_pos_arr = z_pos_mf->array(mfi);
-
1081 
-
1082  int k = 0;
-
1083  for (int i(il); i <= iu; ++i)
-
1084  ofile << x_pos_arr(i,j,k) << ' ' << z_pos_arr(i,j,k) << "\n";
-
1085  }
-
1086  ofile.close();
-
1087 }
+
1165 {
+
1166  // Peel back the level
+
1167  auto& x_pos_mf = m_x_pos[lev];
+
1168  auto& z_pos_mf = m_z_pos[lev];
+
1169 
+
1170  std::ofstream ofile;
+
1171  ofile.open ("MOST_xz_positions.txt");
+
1172 
+
1173  for (MFIter mfi(*x_pos_mf, TileNoZ()); mfi.isValid(); ++mfi) {
+
1174  Box bx = mfi.tilebox(); bx.setBig(2,0);
+
1175  int il = bx.smallEnd(0); int iu = bx.bigEnd(0);
+
1176 
+
1177  auto x_pos_arr = x_pos_mf->array(mfi);
+
1178  auto z_pos_arr = z_pos_mf->array(mfi);
+
1179 
+
1180  int k = 0;
+
1181  for (int i(il); i <= iu; ++i)
+
1182  ofile << x_pos_arr(i,j,k) << ' ' << z_pos_arr(i,j,k) << "\n";
+
1183  }
+
1184  ofile.close();
+
1185 }
Here is the call graph for this function:
@@ -2135,7 +2254,7 @@

-

Referenced by compute_plane_averages(), compute_region_averages(), and update_field_ptrs().

+

Referenced by compute_plane_averages(), compute_region_averages(), set_rotated_fields(), and update_field_ptrs().

@@ -2159,7 +2278,7 @@

-

Referenced by compute_plane_averages(), compute_region_averages(), set_k_indices_N(), set_k_indices_T(), set_norm_indices_T(), set_norm_positions_T(), set_plane_normalization(), and set_z_positions_T().

+

Referenced by compute_plane_averages(), compute_region_averages(), set_k_indices_N(), set_k_indices_T(), set_norm_indices_T(), set_norm_positions_T(), set_plane_normalization(), set_rotated_fields(), and set_z_positions_T().

@@ -2411,7 +2530,7 @@

- +
int MOSTAverage::m_nvar {4}int MOSTAverage::m_nvar {5}
@@ -2519,6 +2638,54 @@

Referenced by compute_region_averages(), set_k_indices_N(), set_k_indices_T(), set_norm_indices_T(), and set_region_normalization().

+

+

+ +

◆ m_rot_fields

+ +
+
+ + + + + +
+ + + + +
amrex::Vector<amrex::Vector<std::unique_ptr<amrex::MultiFab> > > MOSTAverage::m_rot_fields
+ 		+protected
+
+ +

Referenced by compute_plane_averages(), compute_region_averages(), and set_rotated_fields().

+ +
+
+ +

◆ m_rotate

+ +
+
+ + + + + +
+ + + + +
bool MOSTAverage::m_rotate {false}
+ 		+protected
+
+ +

Referenced by compute_averages(), compute_plane_averages(), and compute_region_averages().

+
@@ -2659,7 +2826,7 @@

-

Referenced by compute_plane_averages(), compute_region_averages(), set_k_indices_T(), set_norm_indices_T(), set_norm_positions_T(), and set_z_positions_T().

+

Referenced by compute_plane_averages(), compute_region_averages(), set_k_indices_T(), set_norm_indices_T(), set_norm_positions_T(), set_rotated_fields(), and set_z_positions_T().

diff --git a/classMOSTAverage.js b/classMOSTAverage.js index 7e05449d91..d82c85b6c0 100644 --- a/classMOSTAverage.js +++ b/classMOSTAverage.js @@ -17,6 +17,7 @@ var classMOSTAverage = [ "set_norm_positions_T", "classMOSTAverage.html#a697396705fddae5c919c7e4020cf20b2", null ], [ "set_plane_normalization", "classMOSTAverage.html#a5a0413a85da2e6a13f21cc875c8295d0", null ], [ "set_region_normalization", "classMOSTAverage.html#a1eafe515fb0a3fc673d604b854a3cc13", null ], + [ "set_rotated_fields", "classMOSTAverage.html#a314ac1672f7b8ce2cf9f9d32d00191a5", null ], [ "set_z_positions_T", "classMOSTAverage.html#a96178b02bec37f171ef608cec9a246bf", null ], [ "trilinear_interp_T", "classMOSTAverage.html#aefb42b9f2a5c3347e7ab87abdfcab3d7", null ], [ "update_field_ptrs", "classMOSTAverage.html#acdb5e2dec5f3e9b0a37e194430ca32a7", null ], @@ -44,6 +45,8 @@ var classMOSTAverage = [ "m_policy", "classMOSTAverage.html#a0e87c91bf31d0e60a31b906081d24eea", null ], [ "m_pp_prefix", "classMOSTAverage.html#a8e48f835a742b02f039aeb6bc520aef8", null ], [ "m_radius", "classMOSTAverage.html#a2c167351f6655ef3276f8e5b39439e91", null ], + [ "m_rot_fields", "classMOSTAverage.html#a733f1b5c94de8ee530f4f257510cb277", null ], + [ "m_rotate", "classMOSTAverage.html#a7d43a66f7518f75e694e0582dd40ec44", null ], [ "m_t_avg", "classMOSTAverage.html#a05905a4754c7eb39b766b96889b1bd47", null ], [ "m_t_init", "classMOSTAverage.html#a3fe20fc4a4eb0b283f1d658b6237004c", null ], [ "m_time_window", "classMOSTAverage.html#ac95147c0d7961323ca8b079f63cd4be9", null ], diff --git a/classMOSTAverage__coll__graph.map b/classMOSTAverage__coll__graph.map index a11af8d9c2..f1baf1033b 100644 --- a/classMOSTAverage__coll__graph.map +++ b/classMOSTAverage__coll__graph.map @@ -1,17 +1,17 @@ - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + diff --git a/classMOSTAverage__coll__graph.md5 b/classMOSTAverage__coll__graph.md5 index 6a2f471cb3..7b1283b0ed 100644 --- a/classMOSTAverage__coll__graph.md5 +++ b/classMOSTAverage__coll__graph.md5 @@ -1 +1 @@ -e761f34ee9cc363b7a9de35fb892b43a \ No newline at end of file +a3517679f943a268b38486c83a99a1e7 \ No newline at end of file diff --git a/classMOSTAverage__coll__graph.png b/classMOSTAverage__coll__graph.png index 47cba370de..b316c69c8d 100644 Binary files a/classMOSTAverage__coll__graph.png and b/classMOSTAverage__coll__graph.png differ diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.map b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.map new file mode 100644 index 0000000000..aa36741be9 --- /dev/null +++ b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.map @@ -0,0 +1,6 @@ + + + + + + diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.md5 b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.md5 new file mode 100644 index 0000000000..153d008919 --- /dev/null +++ b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.md5 @@ -0,0 +1 @@ +d8a48f22b25fd2d98bd8deec65855e10 \ No newline at end of file diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.png b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.png new file mode 100644 index 0000000000..b26c006de0 Binary files /dev/null and b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_cgraph.png differ diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.map b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.map new file mode 100644 index 0000000000..a4b42f29f6 --- /dev/null +++ b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.map @@ -0,0 +1,4 @@ + + + + diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.md5 b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.md5 new file mode 100644 index 0000000000..3da8fcbd7b --- /dev/null +++ b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.md5 @@ -0,0 +1 @@ +f7bc8183fbff7cc413bd86d3e56a3848 \ No newline at end of file diff --git a/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.png b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.png new file mode 100644 index 0000000000..9a9c62a1b1 Binary files /dev/null and b/classMOSTAverage_a314ac1672f7b8ce2cf9f9d32d00191a5_icgraph.png differ diff --git a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.map b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.map index ba579138e9..7cf85318d8 100644 --- a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.map +++ b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.map @@ -1,8 +1,11 @@ - - - - - - + + + + + + + + + diff --git a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.md5 b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.md5 index 2760c41ace..2be0443497 100644 --- a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.md5 +++ b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.md5 @@ -1 +1 @@ -c7c3fe9e92f17f1290c90c1ba6349c66 \ No newline at end of file +f04d36843e9f89527384f4d20df31347 \ No newline at end of file diff --git a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.png b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.png index b4af1118bc..809b8b70a3 100644 Binary files a/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.png and b/classMOSTAverage_a7a28005871bb8abb49f44c3976133a4f_cgraph.png differ diff --git a/functions_c.html b/functions_c.html index 7f3ada142a..96e8ad772c 100644 --- a/functions_c.html +++ b/functions_c.html @@ -266,15 +266,15 @@

- c -

    : ABLMost
  • compute_most_bcs() -: ABLMost +: ABLMost
  • compute_plane_averages() : MOSTAverage
  • compute_q_flux() -: custom_flux -, donelan_flux -, moeng_flux +: custom_flux +, donelan_flux +, moeng_flux
  • compute_region_averages() : MOSTAverage diff --git a/functions_d.html b/functions_d.html index 64ff7d2096..4c9200e1f6 100644 --- a/functions_d.html +++ b/functions_d.html @@ -124,12 +124,12 @@

    - d -

    • data : NDArray< DataType >
      • -
    • datalog -: ERF -
    • DataLog() : ERF
      • +
    • datalog +: ERF +
    • datalogname : ERF
      • diff --git a/functions_func_c.html b/functions_func_c.html index bd9d1731da..8ed044b0bf 100644 --- a/functions_func_c.html +++ b/functions_func_c.html @@ -153,15 +153,15 @@

      - c -

        : ABLMost
      • compute_most_bcs() -: ABLMost +: ABLMost
      • compute_plane_averages() : MOSTAverage
      • compute_q_flux() -: custom_flux -, donelan_flux -, moeng_flux +: custom_flux +, donelan_flux +, moeng_flux
      • compute_region_averages() : MOSTAverage diff --git a/functions_func_i.html b/functions_func_i.html index 366829d459..d4e3b1386b 100644 --- a/functions_func_i.html +++ b/functions_func_i.html @@ -102,7 +102,7 @@

        - i -

          , ERFPhysBCFunct_w_no_terrain
        • impose_most_bcs() -: ABLMost +: ABLMost
        • impose_vertical_cons_bcs() : ERFPhysBCFunct_cons @@ -185,7 +185,7 @@

          - i -

            : ERF
          • init_geo_wind_profile() -: ERF +: ERF
          • init_mode_comps() : MamConstituents diff --git a/functions_func_s.html b/functions_func_s.html index b05c32544f..a1dd050eb1 100644 --- a/functions_func_s.html +++ b/functions_func_s.html @@ -163,6 +163,9 @@

            - s -

            • set_region_normalization() : MOSTAverage
              • +
            • set_rotated_fields() +: MOSTAverage +
            • set_slow_fast_timestep_ratio() : MRISplitIntegrator< T >
              • diff --git a/functions_i.html b/functions_i.html index bbd197ca23..9079a23c88 100644 --- a/functions_i.html +++ b/functions_i.html @@ -154,7 +154,7 @@

              - i -

                , ERFPhysBCFunct_w_no_terrain
              • impose_most_bcs() -: ABLMost +: ABLMost
              • impose_vertical_cons_bcs() : ERFPhysBCFunct_cons @@ -241,7 +241,7 @@

                - i -

                  : ERF
                • init_geo_wind_profile() -: ERF +: ERF
                • init_mode_comps() : MamConstituents diff --git a/functions_m.html b/functions_m.html index 0ec9b53880..47a9458c38 100644 --- a/functions_m.html +++ b/functions_m.html @@ -530,6 +530,13 @@

                  - m -

                  • m_relax_mask : ERFFillPatcher
                    • +
                  • m_rot_fields +: MOSTAverage +
                    • +
                  • m_rotate +: ABLMost +, MOSTAverage +
                  • m_rotor_rad : NullWindFarm
                    • diff --git a/functions_s.html b/functions_s.html index 681caa4e5b..dc136263f6 100644 --- a/functions_s.html +++ b/functions_s.html @@ -112,12 +112,12 @@

                    - s -

                    • SampleLine() : ERF
                      • -
                    • samplelinelog -: ERF -
                    • SampleLineLog() : ERF
                      • +
                    • samplelinelog +: ERF +
                    • SampleLineLogName() : ERF
                      • @@ -196,6 +196,9 @@

                      - s -

                      • set_region_normalization() : MOSTAverage
                        • +
                      • set_rotated_fields() +: MOSTAverage +
                      • set_slow_fast_timestep_ratio() : MRISplitIntegrator< T >
                        • diff --git a/functions_vars_m.html b/functions_vars_m.html index 5648bb4e56..b17b3544cc 100644 --- a/functions_vars_m.html +++ b/functions_vars_m.html @@ -530,6 +530,13 @@

                        - m -

                        • m_relax_mask : ERFFillPatcher
                          • +
                        • m_rot_fields +: MOSTAverage +
                          • +
                        • m_rotate +: ABLMost +, MOSTAverage +
                        • m_rotor_rad : NullWindFarm
                          • diff --git a/navtreedata.js b/navtreedata.js index a5cd385a44..7b8782b9fe 100644 --- a/navtreedata.js +++ b/navtreedata.js @@ -76,16 +76,16 @@ var NAVTREEINDEX = "ERF__Constants_8H.html#a2fe4f2c6313692ac5073cb9ca72552e2", "MM5_8cpp.html", "Utils_8H.html#a666ef6030bc3baa94198a32754fc65f2", -"classERF.html#a4d6d990d8111c170692b1e9cc0e918b8", -"classERFFillPatcher.html#a89f24e6cfe30a2180b1667aead7edf28", -"classMM5.html#ac5730f1413ae4a3dd5d4b2c683c41297", -"classNullMoist.html#a75e2d77cb28efa62759818d066b53bb9", -"classRadiation.html#a6a65d086e75212c5d372c2fbdb694843", -"classUnionCIF.html#a0bbd9d187f7efd622fb063c08d06151c", -"globals_f.html", -"structMamConstituents_1_1aerosol__t.html#a171adbde051fa00b94b7e0bfbd22d348", -"structTurbulentPerturbation.html#a20940c88c5c2f6ef1b90d1984867777a", -"structsurface__flux__charnock.html#aef89ab0f62c46e93c9a1029be7a7b472" +"classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c", 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['pre_5fupdate_4192',['pre_update',['../classMRISplitIntegrator.html#a5c76e162725bceaa3f6c0dac2928bcd6',1,'MRISplitIntegrator']]], + ['pre_5fupdate_5ffun_4193',['pre_update_fun',['../TI__slow__rhs__fun_8H.html#aadc7f4c039b08417963410e7f76bb2dd',1,'TI_slow_rhs_fun.H']]], + ['prefi_4194',['prefi',['../structPhysProp_1_1physprop__t.html#ad1a2b4cadbb2d65df2caff3232e1ab63',1,'PhysProp::physprop_t::prefi()'],['../classMam4__aer.html#adffbde9f294834c29b86c8d74f4155b8',1,'Mam4_aer::prefi()']]], + ['prefr_4195',['prefr',['../structPhysProp_1_1physprop__t.html#adfa6696c636955b4f5388f5c83795afb',1,'PhysProp::physprop_t::prefr()'],['../classMam4__aer.html#a7211d56f004f39cd34118af3c380a71e',1,'Mam4_aer::prefr()']]], + ['pres1d_4196',['pres1d',['../classSAM.html#a77e43f5c8a68a43f8109aa18b71fa64e',1,'SAM']]], + ['press_5fref_5finp_5fsound_4197',['press_ref_inp_sound',['../structInputSoundingData.html#a09ac90305ea3a4559d83ca589678a5aa',1,'InputSoundingData']]], + ['previouscputimeused_4198',['previousCPUTimeUsed',['../classERF.html#a1f412097e565c23acb4c17c67db10e22',1,'ERF']]], + ['prob_4199',['prob',['../classERF.html#a60e8cb933f237903e3fbcd6376c26db0',1,'ERF']]], + ['profile_5fint_4200',['profile_int',['../classERF.html#a633cd0b44d2e38f02c23e953aecd69eb',1,'ERF']]], + ['project_5fevery_5fstage_4201',['project_every_stage',['../structSolverChoice.html#afa4e734fc983ec9e6a0382fc369c309e',1,'SolverChoice']]], + ['prop_4202',['prop',['../classMamConstituents.html#af4a85a7b8e8e4a677c8d34970487f14e',1,'MamConstituents']]], + ['props_4203',['props',['../structMamConstituents_1_1mode__component__t.html#a3f9b94d6f306e89f1be96830e442fb10',1,'MamConstituents::mode_component_t']]], + ['pt_5ftype_4204',['pt_type',['../structTurbulentPerturbation.html#ad0d78e0adbb21ae36f4483dd30e15d58',1,'TurbulentPerturbation']]] ]; diff --git a/structcustom__flux-members.html b/structcustom__flux-members.html index 48ef45bb8a..bc02df0dec 100644 --- a/structcustom__flux-members.html +++ b/structcustom__flux-members.html @@ -89,7 +89,7 @@

                          This is the complete list of members for custom_flux, including all inherited members.

                          - + diff --git a/structcustom__flux.html b/structcustom__flux.html index be30c689da..b223d7a256 100644 --- a/structcustom__flux.html +++ b/structcustom__flux.html @@ -107,8 +107,8 @@ Public Member Functions - - + + @@ -151,14 +151,14 @@

                          -
                          1389  : zlo(l_zlo) {}
                          -
                          custom_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1624
                          +
                          1399  : zlo(l_zlo) {}
                          +
                          custom_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1639

                          Member Function Documentation

                          - -

                          ◆ compute_q_flux()

                          + +

                          ◆ compute_q_flux()

                          @@ -206,7 +206,7 @@

                          - + @@ -286,39 +286,45 @@

                          -
                          1413  {
                          -
                          1414  amrex::Real rho, eta;
                          -
                          1415 
                          -
                          1416  int ic, jc;
                          -
                          1417  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1418  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1419  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1420  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1421 
                          -
                          1422  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          -
                          1423 
                          -
                          1424  amrex::Real qstar = q_star_arr(ic,jc,zlo);
                          -
                          1425  amrex::Real moflux = (std::abs(qstar) > eps) ? -rho * qstar : 0.0;
                          -
                          1426  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1427 
                          -
                          1428  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for custom moisture flux");
                          -
                          1429 
                          -
                          1430  int ie, je;
                          -
                          1431  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1432  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1433  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1434  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1435  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          1436  eta = amrex::max(eta,eta_eps);
                          -
                          1437  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
                          -
                          1438 
                          -
                          1439  return moflux;
                          -
                          1440  }
                          +
                          1423  {
                          +
                          1424  amrex::Real rho, eta;
                          +
                          1425 
                          +
                          1426  int ic, jc;
                          +
                          1427  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1428  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1429  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1430  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1431 
                          +
                          1432  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          +
                          1433 
                          +
                          1434  amrex::Real qstar = q_star_arr(ic,jc,zlo);
                          +
                          1435  amrex::Real moflux = (std::abs(qstar) > eps) ? -rho * qstar : 0.0;
                          +
                          1436  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1437 
                          +
                          1438  if (exp_most) {
                          +
                          1439  // surface gradient equal to gradient at first zface
                          +
                          1440  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
                          +
                          1441  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
                          +
                          1442  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
                          +
                          1443  } else {
                          +
                          1444  int ie, je;
                          +
                          1445  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1446  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1447  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1448  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1449  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          1450  eta = amrex::max(eta,eta_eps);
                          +
                          1451  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
                          +
                          1452  }
                          +
                          1453 
                          +
                          1454  return moflux;
                          +
                          1455  }
                          Rho_comp
                          #define Rho_comp
                          Definition: IndexDefines.H:12
                          +
                          RhoQ1_comp
                          #define RhoQ1_comp
                          Definition: IndexDefines.H:17
                          EddyDiff::Q_v
                          @ Q_v
                          Definition: IndexDefines.H:132
                          MicVar_Kess::rho
                          @ rho
                          Definition: Kessler.H:30
                          -
                          custom_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1626
                          -
                          custom_flux::eps
                          const amrex::Real eps
                          Definition: MOSTStress.H:1625
                          +
                          custom_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1641
                          +
                          custom_flux::eps
                          const amrex::Real eps
                          Definition: MOSTStress.H:1640
                          @@ -451,39 +457,39 @@

                          -
                          1463  {
                          -
                          1464  amrex::Real rho, eta;
                          -
                          1465 
                          -
                          1466  int ic, jc;
                          -
                          1467  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1468  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1469  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1470  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1471 
                          -
                          1472  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          -
                          1473 
                          -
                          1474  amrex::Real tstar = t_star_arr(ic,jc,zlo);
                          -
                          1475  amrex::Real moflux = (std::abs(tstar) > eps) ? -rho * tstar : 0.0;
                          -
                          1476  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1477 
                          -
                          1478  if (exp_most) {
                          -
                          1479  // surface gradient equal to gradient at first zface
                          -
                          1480  amrex::Real thetagrad = ( cons_arr(ic,jc,zlo+1,RhoTheta_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
                          -
                          1481  - cons_arr(ic,jc,zlo ,RhoTheta_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
                          -
                          1482  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - rho*thetagrad * deltaz;
                          -
                          1483  } else {
                          -
                          1484  int ie, je;
                          -
                          1485  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1486  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1487  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1488  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1489  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          1490  eta = amrex::max(eta,eta_eps);
                          -
                          1491  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
                          -
                          1492  }
                          -
                          1493 
                          -
                          1494  return moflux;
                          -
                          1495  }
                          +
                          1478  {
                          +
                          1479  amrex::Real rho, eta;
                          +
                          1480 
                          +
                          1481  int ic, jc;
                          +
                          1482  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1483  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1484  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1485  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1486 
                          +
                          1487  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          +
                          1488 
                          +
                          1489  amrex::Real tstar = t_star_arr(ic,jc,zlo);
                          +
                          1490  amrex::Real moflux = (std::abs(tstar) > eps) ? -rho * tstar : 0.0;
                          +
                          1491  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1492 
                          +
                          1493  if (exp_most) {
                          +
                          1494  // surface gradient equal to gradient at first zface
                          +
                          1495  amrex::Real thetagrad = ( cons_arr(ic,jc,zlo+1,RhoTheta_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
                          +
                          1496  - cons_arr(ic,jc,zlo ,RhoTheta_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
                          +
                          1497  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - rho*thetagrad * deltaz;
                          +
                          1498  } else {
                          +
                          1499  int ie, je;
                          +
                          1500  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1501  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1502  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1503  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1504  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          1505  eta = amrex::max(eta,eta_eps);
                          +
                          1506  dest_arr(i,j,k,icomp+n) = dest_arr(i,j,zlo,icomp+n) - moflux*rho/eta*deltaz;
                          +
                          1507  }
                          +
                          1508 
                          +
                          1509  return moflux;
                          +
                          1510  }
                          RhoTheta_comp
                          #define RhoTheta_comp
                          Definition: IndexDefines.H:13
                          EddyDiff::Theta_v
                          @ Theta_v
                          Definition: IndexDefines.H:128
                          @@ -600,50 +606,50 @@

                          -
                          1515  {
                          -
                          1516  amrex::Real velx, vely, rho, eta;
                          -
                          1517  int jy, ic, jc;
                          -
                          1518 
                          -
                          1519  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          -
                          1520  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          -
                          1521 
                          -
                          1522  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          -
                          1523  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          -
                          1524 
                          -
                          1525  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          -
                          1526  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1527  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1528  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1529 
                          -
                          1530  velx = velx_arr(i,j,zlo);
                          -
                          1531  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          -
                          1532  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          -
                          1533  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          -
                          1534  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          -
                          1535 
                          -
                          1536  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                          -
                          1537  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1538  amrex::Real stressx = rho * ustar * ustar * velx / wsp;
                          -
                          1539  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1540 
                          -
                          1541  if (exp_most) {
                          -
                          1542  // surface gradient equal to gradient at first zface
                          -
                          1543  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          -
                          1544  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          -
                          1545  } else {
                          -
                          1546  int ie, je;
                          -
                          1547  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          -
                          1548  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1549  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1550  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1551  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          -
                          1552  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          -
                          1553  eta = amrex::max(eta,eta_eps);
                          -
                          1554  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          -
                          1555  }
                          -
                          1556 
                          -
                          1557  return stressx;
                          -
                          1558  }
                          +
                          1530  {
                          +
                          1531  amrex::Real velx, vely, rho, eta;
                          +
                          1532  int jy, ic, jc;
                          +
                          1533 
                          +
                          1534  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          +
                          1535  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          +
                          1536 
                          +
                          1537  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          +
                          1538  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          +
                          1539 
                          +
                          1540  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          +
                          1541  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1542  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1543  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1544 
                          +
                          1545  velx = velx_arr(i,j,zlo);
                          +
                          1546  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          +
                          1547  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          +
                          1548  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          +
                          1549  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          +
                          1550 
                          +
                          1551  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                          +
                          1552  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1553  amrex::Real stressx = rho * ustar * ustar * velx / wsp;
                          +
                          1554  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1555 
                          +
                          1556  if (exp_most) {
                          +
                          1557  // surface gradient equal to gradient at first zface
                          +
                          1558  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          +
                          1559  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          +
                          1560  } else {
                          +
                          1561  int ie, je;
                          +
                          1562  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          +
                          1563  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1564  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1565  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1566  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          +
                          1567  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          +
                          1568  eta = amrex::max(eta,eta_eps);
                          +
                          1569  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          +
                          1570  }
                          +
                          1571 
                          +
                          1572  return stressx;
                          +
                          1573  }
                          EddyDiff::Mom_v
                          @ Mom_v
                          Definition: IndexDefines.H:127
                          @@ -759,50 +765,50 @@

                          -
                          1578  {
                          -
                          1579  amrex::Real velx, vely, rho, eta;
                          -
                          1580  int ix, ic, jc;
                          -
                          1581 
                          -
                          1582  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          -
                          1583  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          -
                          1584 
                          -
                          1585  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          -
                          1586  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          -
                          1587 
                          -
                          1588  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1589  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          -
                          1590  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1591  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1592 
                          -
                          1593  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          -
                          1594  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          -
                          1595  vely = vely_arr(i,j,zlo);
                          -
                          1596  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          -
                          1597  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          -
                          1598 
                          -
                          1599  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                          -
                          1600  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1601  amrex::Real stressy = rho * ustar * ustar * vely / wsp;
                          -
                          1602  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1603 
                          -
                          1604  if (exp_most) {
                          -
                          1605  // surface gradient equal to gradient at first zface
                          -
                          1606  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          -
                          1607  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          -
                          1608  } else {
                          -
                          1609  int ie, je;
                          -
                          1610  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1611  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          -
                          1612  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1613  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1614  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          -
                          1615  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          -
                          1616  eta = amrex::max(eta,eta_eps);
                          -
                          1617  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          -
                          1618  }
                          -
                          1619 
                          -
                          1620  return stressy;
                          -
                          1621  }
                          +
                          1593  {
                          +
                          1594  amrex::Real velx, vely, rho, eta;
                          +
                          1595  int ix, ic, jc;
                          +
                          1596 
                          +
                          1597  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          +
                          1598  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          +
                          1599 
                          +
                          1600  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          +
                          1601  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          +
                          1602 
                          +
                          1603  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1604  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          +
                          1605  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1606  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1607 
                          +
                          1608  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          +
                          1609  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          +
                          1610  vely = vely_arr(i,j,zlo);
                          +
                          1611  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          +
                          1612  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          +
                          1613 
                          +
                          1614  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                          +
                          1615  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1616  amrex::Real stressy = rho * ustar * ustar * vely / wsp;
                          +
                          1617  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1618 
                          +
                          1619  if (exp_most) {
                          +
                          1620  // surface gradient equal to gradient at first zface
                          +
                          1621  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          +
                          1622  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          +
                          1623  } else {
                          +
                          1624  int ie, je;
                          +
                          1625  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1626  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          +
                          1627  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1628  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1629  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          +
                          1630  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          +
                          1631  eta = amrex::max(eta,eta_eps);
                          +
                          1632  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          +
                          1633  }
                          +
                          1634 
                          +
                          1635  return stressy;
                          +
                          1636  }

                          @@ -827,7 +833,7 @@

                          -

                          Referenced by compute_q_flux(), and compute_t_flux().

                          +

                          Referenced by compute_q_flux(), and compute_t_flux().

                          @@ -851,7 +857,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          @@ -875,7 +881,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          diff --git a/structcustom__flux.js b/structcustom__flux.js index 1cbb84bbc7..b0ac57dbaf 100644 --- a/structcustom__flux.js +++ b/structcustom__flux.js @@ -1,7 +1,7 @@ var structcustom__flux = [ [ "custom_flux", "structcustom__flux.html#aa9715fd8b84d6df19fa17c89a703210a", null ], - [ "compute_q_flux", "structcustom__flux.html#aca20f274a2d45502698a74ed9b839b02", null ], + [ "compute_q_flux", "structcustom__flux.html#ae9e13bc10b4594df556671d9a042b48b", null ], [ "compute_t_flux", "structcustom__flux.html#abb193ac77724a6452a6068c3b5954081", null ], [ "compute_u_flux", "structcustom__flux.html#a6ab8b167f190f9b0c4c6adb05acfff40", null ], [ "compute_v_flux", "structcustom__flux.html#a2fe8dd883e33e274f6e44f9c0c5cf118", null ], diff --git a/structdonelan__flux-members.html b/structdonelan__flux-members.html index a8ced78c6b..53b130c227 100644 --- a/structdonelan__flux-members.html +++ b/structdonelan__flux-members.html @@ -89,7 +89,7 @@

                          This is the complete list of members for donelan_flux, including all inherited members.

                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constcustom_fluxinline
                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constcustom_fluxinline
                          compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constcustom_fluxinline
                          compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constcustom_fluxinline
                          compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constcustom_fluxinline
                           custom_flux (int l_zlo)
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &q_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux (const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
                          const amrex::Real & , dz1,
                          - + diff --git a/structdonelan__flux.html b/structdonelan__flux.html index 89b31ef7d3..153260b97e 100644 --- a/structdonelan__flux.html +++ b/structdonelan__flux.html @@ -107,8 +107,8 @@ Public Member Functions - - + + @@ -149,14 +149,14 @@

                          -
                          1118  : zlo(l_zlo) {}
                          -
                          donelan_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1378
                          +
                          1123  : zlo(l_zlo) {}
                          +
                          donelan_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1388

                          Member Function Documentation

                          - -

                          ◆ compute_q_flux()

                          + +

                          ◆ compute_q_flux()

                          @@ -204,7 +204,7 @@

                          - + @@ -284,41 +284,46 @@

                          -
                          1142  {
                          -
                          1143  amrex::Real rho, eta, qv;
                          -
                          1144 
                          -
                          1145  int ic, jc;
                          -
                          1146  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1147  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1148  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1149  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1150 
                          -
                          1151  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          -
                          1152  qv = cons_arr(ic,jc,zlo,RhoQ1_comp) / rho;
                          -
                          1153 
                          -
                          1154  // TODO: Integrate MOST with moisture and DONELAN FLUX type
                          -
                          1155  amrex::Real moflux = 0.0;
                          -
                          1156  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1157 
                          -
                          1158  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for Donelan moisture flux");
                          -
                          1159 
                          -
                          1160  int ie, je;
                          -
                          1161  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1162  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1163  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1164  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1165  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          1166  eta = amrex::max(eta,eta_eps);
                          -
                          1167  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
                          -
                          1168 
                          -
                          1169  return moflux;
                          -
                          1170  }
                          +
                          1147  {
                          +
                          1148  amrex::Real rho, eta, qv;
                          +
                          1149 
                          +
                          1150  int ic, jc;
                          +
                          1151  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1152  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1153  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1154  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1155 
                          +
                          1156  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          +
                          1157  qv = cons_arr(ic,jc,zlo,RhoQ1_comp) / rho;
                          +
                          1158 
                          +
                          1159  // TODO: Integrate MOST with moisture and DONELAN FLUX type
                          +
                          1160  amrex::Real moflux = 0.0;
                          +
                          1161  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1162 
                          +
                          1163  if (exp_most) {
                          +
                          1164  // surface gradient equal to gradient at first zface
                          +
                          1165  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
                          +
                          1166  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
                          +
                          1167  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
                          +
                          1168  } else {
                          +
                          1169  int ie, je;
                          +
                          1170  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1171  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1172  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1173  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1174  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          1175  eta = amrex::max(eta,eta_eps);
                          +
                          1176  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
                          +
                          1177  }
                          +
                          1178 
                          +
                          1179  return moflux;
                          +
                          1180  }
                          Rho_comp
                          #define Rho_comp
                          Definition: IndexDefines.H:12
                          RhoQ1_comp
                          #define RhoQ1_comp
                          Definition: IndexDefines.H:17
                          EddyDiff::Q_v
                          @ Q_v
                          Definition: IndexDefines.H:132
                          MicVar_Kess::rho
                          @ rho
                          Definition: Kessler.H:30
                          MicVar_Kess::qv
                          @ qv
                          Definition: Kessler.H:36
                          -
                          donelan_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1379
                          +
                          donelan_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1389
                          @@ -451,45 +456,45 @@

                          -
                          1193  {
                          -
                          1194  amrex::Real rho, theta, eta;
                          -
                          1195 
                          -
                          1196  int ic, jc;
                          -
                          1197  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1198  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1199  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1200  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1201 
                          -
                          1202  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          -
                          1203  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                          -
                          1204 
                          -
                          1205  amrex::Real Cd = 0.0012;
                          -
                          1206  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                          -
                          1207  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                          -
                          1208  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                          -
                          1209  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
                          -
                          1210  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1203  {
                          +
                          1204  amrex::Real rho, theta, eta;
                          +
                          1205 
                          +
                          1206  int ic, jc;
                          +
                          1207  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1208  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1209  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1210  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          1211 
                          -
                          1212  if (exp_most) {
                          -
                          1213  // surface gradient equal to gradient at first zface
                          -
                          1214  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
                          -
                          1215  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
                          -
                          1216  } else {
                          -
                          1217  int ie, je;
                          -
                          1218  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1219  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1220  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1221  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1222  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          1223  eta = amrex::max(eta,eta_eps);
                          -
                          1224  // Note: Kh = eta/rho
                          -
                          1225  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
                          -
                          1226  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
                          -
                          1227  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
                          -
                          1228  }
                          -
                          1229 
                          -
                          1230  return moflux;
                          -
                          1231  }
                          +
                          1212  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          +
                          1213  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                          +
                          1214 
                          +
                          1215  amrex::Real Cd = 0.0012;
                          +
                          1216  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                          +
                          1217  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                          +
                          1218  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                          +
                          1219  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
                          +
                          1220  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1221 
                          +
                          1222  if (exp_most) {
                          +
                          1223  // surface gradient equal to gradient at first zface
                          +
                          1224  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
                          +
                          1225  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
                          +
                          1226  } else {
                          +
                          1227  int ie, je;
                          +
                          1228  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1229  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1230  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1231  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1232  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          1233  eta = amrex::max(eta,eta_eps);
                          +
                          1234  // Note: Kh = eta/rho
                          +
                          1235  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
                          +
                          1236  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
                          +
                          1237  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
                          +
                          1238  }
                          +
                          1239 
                          +
                          1240  return moflux;
                          +
                          1241  }
                          RhoTheta_comp
                          #define RhoTheta_comp
                          Definition: IndexDefines.H:13
                          EddyDiff::Theta_v
                          @ Theta_v
                          Definition: IndexDefines.H:128
                          LsmVar_MM5::theta
                          @ theta
                          Definition: MM5.H:20
                          @@ -607,59 +612,59 @@

                          -
                          1251  {
                          -
                          1252  amrex::Real velx, vely, rho, eta;
                          -
                          1253  int jy, ic, jc;
                          -
                          1254 
                          -
                          1255  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          -
                          1256  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          -
                          1257 
                          -
                          1258  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          -
                          1259  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          -
                          1260 
                          -
                          1261  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          -
                          1262  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          1263  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1264  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1265 
                          -
                          1266  velx = velx_arr(i,j,zlo);
                          -
                          1267  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          -
                          1268  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          -
                          1269  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          -
                          1270  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          -
                          1271 
                          -
                          1272  amrex::Real Cd = 0.001;
                          -
                          1273  const amrex::Real c = 7e-5;
                          -
                          1274  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1275  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                          -
                          1276  if (wsp_mean <= 5.0) {
                          -
                          1277  Cd = 0.001;
                          -
                          1278  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                          -
                          1279  Cd = 0.001 + c * (wsp_mean - 5.0);
                          -
                          1280  } else {
                          -
                          1281  Cd = 0.0024;
                          -
                          1282  }
                          -
                          1283  amrex::Real stressx = rho * Cd * velx * wsp;
                          -
                          1284  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1285 
                          -
                          1286  if (exp_most) {
                          -
                          1287  // surface gradient equal to gradient at first zface
                          -
                          1288  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          -
                          1289  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          +
                          1261  {
                          +
                          1262  amrex::Real velx, vely, rho, eta;
                          +
                          1263  int jy, ic, jc;
                          +
                          1264 
                          +
                          1265  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          +
                          1266  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          +
                          1267 
                          +
                          1268  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          +
                          1269  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          +
                          1270 
                          +
                          1271  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          +
                          1272  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          1273  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1274  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1275 
                          +
                          1276  velx = velx_arr(i,j,zlo);
                          +
                          1277  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          +
                          1278  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          +
                          1279  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          +
                          1280  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          +
                          1281 
                          +
                          1282  amrex::Real Cd = 0.001;
                          +
                          1283  const amrex::Real c = 7e-5;
                          +
                          1284  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1285  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                          +
                          1286  if (wsp_mean <= 5.0) {
                          +
                          1287  Cd = 0.001;
                          +
                          1288  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                          +
                          1289  Cd = 0.001 + c * (wsp_mean - 5.0);
                          1290  } else {
                          -
                          1291  int ie, je;
                          -
                          1292  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          -
                          1293  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1294  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1295  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1296  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          -
                          1297  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          -
                          1298  eta = amrex::max(eta,eta_eps);
                          -
                          1299  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          -
                          1300  }
                          -
                          1301 
                          -
                          1302  return stressx;
                          -
                          1303  }
                          +
                          1291  Cd = 0.0024;
                          +
                          1292  }
                          +
                          1293  amrex::Real stressx = rho * Cd * velx * wsp;
                          +
                          1294  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1295 
                          +
                          1296  if (exp_most) {
                          +
                          1297  // surface gradient equal to gradient at first zface
                          +
                          1298  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          +
                          1299  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          +
                          1300  } else {
                          +
                          1301  int ie, je;
                          +
                          1302  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          +
                          1303  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1304  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1305  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1306  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          +
                          1307  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          +
                          1308  eta = amrex::max(eta,eta_eps);
                          +
                          1309  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          +
                          1310  }
                          +
                          1311 
                          +
                          1312  return stressx;
                          +
                          1313  }
                          EddyDiff::Mom_v
                          @ Mom_v
                          Definition: IndexDefines.H:127
                          @@ -775,59 +780,59 @@

                          -
                          1323  {
                          -
                          1324  amrex::Real velx, vely, rho, eta;
                          -
                          1325  int ix, ic, jc;
                          -
                          1326 
                          -
                          1327  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          -
                          1328  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          -
                          1329 
                          -
                          1330  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          -
                          1331  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          -
                          1332 
                          -
                          1333  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1334  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          -
                          1335  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1336  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          -
                          1337 
                          -
                          1338  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          -
                          1339  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          -
                          1340  vely = vely_arr(i,j,zlo);
                          -
                          1341  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          -
                          1342  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          -
                          1343 
                          -
                          1344  amrex::Real Cd = 0.001;
                          -
                          1345  const amrex::Real c = 7e-5;
                          -
                          1346  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1347  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                          -
                          1348  if (wsp_mean <= 5.0) {
                          -
                          1349  Cd = 0.001;
                          -
                          1350  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                          -
                          1351  Cd = 0.001 + c * (wsp_mean - 5.0);
                          -
                          1352  } else {
                          -
                          1353  Cd = 0.0024;
                          -
                          1354  }
                          -
                          1355  amrex::Real stressy = rho * Cd * vely * wsp;
                          -
                          1356  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1357 
                          -
                          1358  if (exp_most) {
                          -
                          1359  // surface gradient equal to gradient at first zface
                          -
                          1360  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          -
                          1361  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          +
                          1333  {
                          +
                          1334  amrex::Real velx, vely, rho, eta;
                          +
                          1335  int ix, ic, jc;
                          +
                          1336 
                          +
                          1337  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          +
                          1338  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          +
                          1339 
                          +
                          1340  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          +
                          1341  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          +
                          1342 
                          +
                          1343  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1344  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          +
                          1345  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1346  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1347 
                          +
                          1348  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          +
                          1349  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          +
                          1350  vely = vely_arr(i,j,zlo);
                          +
                          1351  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          +
                          1352  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          +
                          1353 
                          +
                          1354  amrex::Real Cd = 0.001;
                          +
                          1355  const amrex::Real c = 7e-5;
                          +
                          1356  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1357  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                          +
                          1358  if (wsp_mean <= 5.0) {
                          +
                          1359  Cd = 0.001;
                          +
                          1360  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                          +
                          1361  Cd = 0.001 + c * (wsp_mean - 5.0);
                          1362  } else {
                          -
                          1363  int ie, je;
                          -
                          1364  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1365  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          -
                          1366  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1367  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1368  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          -
                          1369  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          -
                          1370  eta = amrex::max(eta,eta_eps);
                          -
                          1371  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          -
                          1372  }
                          -
                          1373 
                          -
                          1374  return stressy;
                          -
                          1375  }
                          +
                          1363  Cd = 0.0024;
                          +
                          1364  }
                          +
                          1365  amrex::Real stressy = rho * Cd * vely * wsp;
                          +
                          1366  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1367 
                          +
                          1368  if (exp_most) {
                          +
                          1369  // surface gradient equal to gradient at first zface
                          +
                          1370  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          +
                          1371  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          +
                          1372  } else {
                          +
                          1373  int ie, je;
                          +
                          1374  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1375  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          +
                          1376  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1377  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1378  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          +
                          1379  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          +
                          1380  eta = amrex::max(eta,eta_eps);
                          +
                          1381  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          +
                          1382  }
                          +
                          1383 
                          +
                          1384  return stressy;
                          +
                          1385  }

                          @@ -852,7 +857,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          @@ -876,7 +881,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          diff --git a/structdonelan__flux.js b/structdonelan__flux.js index 013322babe..87be1c08e7 100644 --- a/structdonelan__flux.js +++ b/structdonelan__flux.js @@ -1,7 +1,7 @@ var structdonelan__flux = [ [ "donelan_flux", "structdonelan__flux.html#a804902863523b5f641c44aadc3602e97", null ], - [ "compute_q_flux", "structdonelan__flux.html#a8d0fc02fd064b22206380d593b628efa", null ], + [ "compute_q_flux", "structdonelan__flux.html#adb397919f3dc33f33d8bdc7b99c52efc", null ], [ "compute_t_flux", "structdonelan__flux.html#a999e3bdb322d29fcdfbd51047fb32ee0", null ], [ "compute_u_flux", "structdonelan__flux.html#a44a032acc6bd6f42ff90f5a0ac14f4cf", null ], [ "compute_v_flux", "structdonelan__flux.html#ad2da09025b821f79782fa580010c4df2", null ], diff --git a/structmoeng__flux-members.html b/structmoeng__flux-members.html index 72d30287f2..be4d03a898 100644 --- a/structmoeng__flux-members.html +++ b/structmoeng__flux-members.html @@ -89,7 +89,7 @@

                          This is the complete list of members for moeng_flux, including all inherited members.

                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constdonelan_fluxinline
                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constdonelan_fluxinline
                          compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) constdonelan_fluxinline
                          compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constdonelan_fluxinline
                          compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constdonelan_fluxinline
                           donelan_flux (int l_zlo)
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux (const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                          const amrex::Real & , dz1,
                          - + diff --git a/structmoeng__flux.html b/structmoeng__flux.html index 97a1989393..5c94de665e 100644 --- a/structmoeng__flux.html +++ b/structmoeng__flux.html @@ -107,8 +107,8 @@ Public Member Functions - - + + @@ -152,13 +152,13 @@

                          828  : zlo(l_zlo) {}
                          -
                          moeng_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1106
                          +
                          moeng_flux::zlo
                          int zlo
                          Definition: MOSTStress.H:1111

                          Member Function Documentation

                          - -

                          ◆ compute_q_flux()

                          + +

                          ◆ compute_q_flux()

                          @@ -206,7 +206,7 @@

                          - + @@ -302,25 +302,30 @@

                          865  amrex::Real moflux = 0.0;
                          866  amrex::Real deltaz = dz * (zlo - k);
                          867 
                          -
                          868  if (exp_most) amrex::Abort("Explicit MOST stress not implemented for Moeng moisture flux");
                          -
                          869 
                          -
                          870  int ie, je;
                          -
                          871  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          872  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          873  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          874  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          875  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          876  eta = amrex::max(eta,eta_eps);
                          -
                          877  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
                          -
                          878 
                          -
                          879  return moflux;
                          -
                          880  }
                          +
                          868  if (exp_most) {
                          +
                          869  // surface gradient equal to gradient at first zface
                          +
                          870  amrex::Real qvgrad = ( cons_arr(ic,jc,zlo+1,RhoQ1_comp)/cons_arr(ic,jc,zlo+1,Rho_comp)
                          +
                          871  - cons_arr(ic,jc,zlo ,RhoQ1_comp)/cons_arr(ic,jc,zlo ,Rho_comp)) / (0.5*(dz+dz1));
                          +
                          872  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoQ1_comp) - rho*qvgrad * deltaz;
                          +
                          873  } else {
                          +
                          874  int ie, je;
                          +
                          875  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          876  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          877  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          878  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          879  eta = eta_arr(ie,je,zlo,EddyDiff::Q_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          880  eta = amrex::max(eta,eta_eps);
                          +
                          881  dest_arr(i,j,k,icomp+n) = rho*(qv - moflux*rho/eta*deltaz);
                          +
                          882  }
                          +
                          883 
                          +
                          884  return moflux;
                          +
                          885  }
                          Rho_comp
                          #define Rho_comp
                          Definition: IndexDefines.H:12
                          RhoQ1_comp
                          #define RhoQ1_comp
                          Definition: IndexDefines.H:17
                          EddyDiff::Q_v
                          @ Q_v
                          Definition: IndexDefines.H:132
                          MicVar_Kess::rho
                          @ rho
                          Definition: Kessler.H:30
                          MicVar_Kess::qv
                          @ qv
                          Definition: Kessler.H:36
                          -
                          moeng_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1108
                          +
                          moeng_flux::eta_eps
                          const amrex::Real eta_eps
                          Definition: MOSTStress.H:1113
                          @@ -453,67 +458,67 @@

                          -
                          903  {
                          -
                          904  amrex::Real velx, vely, rho, theta, eta;
                          -
                          905  int ix, jx, iy, jy, ic, jc;
                          -
                          906 
                          -
                          907  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          -
                          908  jx = j < lbound(velx_arr).y ? lbound(velx_arr).y : j;
                          -
                          909  ix = ix > ubound(velx_arr).x-1 ? ubound(velx_arr).x-1 : ix;
                          -
                          910  jx = jx > ubound(velx_arr).y ? ubound(velx_arr).y : jx;
                          +
                          908  {
                          +
                          909  amrex::Real velx, vely, rho, theta, eta;
                          +
                          910  int ix, jx, iy, jy, ic, jc;
                          911 
                          -
                          912  iy = i < lbound(vely_arr).x ? lbound(vely_arr).x : i;
                          -
                          913  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          -
                          914  iy = iy > ubound(vely_arr).x ? ubound(vely_arr).x : iy;
                          -
                          915  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          +
                          912  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          +
                          913  jx = j < lbound(velx_arr).y ? lbound(velx_arr).y : j;
                          +
                          914  ix = ix > ubound(velx_arr).x-1 ? ubound(velx_arr).x-1 : ix;
                          +
                          915  jx = jx > ubound(velx_arr).y ? ubound(velx_arr).y : jx;
                          916 
                          -
                          917  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          918  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          919  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          920  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          917  iy = i < lbound(vely_arr).x ? lbound(vely_arr).x : i;
                          +
                          918  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          +
                          919  iy = iy > ubound(vely_arr).x ? ubound(vely_arr).x : iy;
                          +
                          920  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          921 
                          -
                          922  velx = 0.5 *( velx_arr(ix,jx,zlo) + velx_arr(ix+1,jx ,zlo) );
                          -
                          923  vely = 0.5 *( vely_arr(iy,jy,zlo) + vely_arr(iy ,jy+1,zlo) );
                          -
                          924  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          -
                          925  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                          +
                          922  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          923  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          924  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          925  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          926 
                          -
                          927  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                          -
                          928  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                          -
                          929  amrex::Real ustar = u_star_arr(ic,jc,zlo);
                          -
                          930  amrex::Real tstar = t_star_arr(ic,jc,zlo);
                          -
                          931  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                          -
                          932 
                          -
                          933  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          934  amrex::Real num1 = wsp * (theta_mean-theta_surf);
                          -
                          935  amrex::Real num2 = wsp_mean * (theta-theta_mean);
                          -
                          936  amrex::Real moflux = (std::abs(tstar) > eps) ?
                          -
                          937  -tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
                          -
                          938  amrex::Real deltaz = dz * (zlo - k);
                          -
                          939 
                          -
                          940  if (exp_most) {
                          -
                          941  // surface gradient equal to gradient at first zface
                          -
                          942  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
                          -
                          943  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
                          -
                          944  } else {
                          -
                          945  int ie, je;
                          -
                          946  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          947  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          948  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          949  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          950  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          -
                          951  eta = amrex::max(eta,eta_eps);
                          -
                          952  // Note: Kh = eta/rho
                          -
                          953  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
                          -
                          954  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
                          -
                          955  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
                          -
                          956  }
                          -
                          957 
                          -
                          958  return moflux;
                          -
                          959  }
                          +
                          927  velx = 0.5 *( velx_arr(ix,jx,zlo) + velx_arr(ix+1,jx ,zlo) );
                          +
                          928  vely = 0.5 *( vely_arr(iy,jy,zlo) + vely_arr(iy ,jy+1,zlo) );
                          +
                          929  rho = cons_arr(ic,jc,zlo,Rho_comp);
                          +
                          930  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                          +
                          931 
                          +
                          932  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                          +
                          933  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                          +
                          934  amrex::Real ustar = u_star_arr(ic,jc,zlo);
                          +
                          935  amrex::Real tstar = t_star_arr(ic,jc,zlo);
                          +
                          936  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                          +
                          937 
                          +
                          938  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          939  amrex::Real num1 = wsp * (theta_mean-theta_surf);
                          +
                          940  amrex::Real num2 = wsp_mean * (theta-theta_mean);
                          +
                          941  amrex::Real moflux = (std::abs(tstar) > eps) ?
                          +
                          942  -tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
                          +
                          943  amrex::Real deltaz = dz * (zlo - k);
                          +
                          944 
                          +
                          945  if (exp_most) {
                          +
                          946  // surface gradient equal to gradient at first zface
                          +
                          947  amrex::Real thetagrad = (cons_arr(ic,jc,zlo+1,RhoTheta_comp) - cons_arr(ic,jc,zlo,RhoTheta_comp)) / (0.5*(dz+dz1));
                          +
                          948  dest_arr(i,j,k,icomp+n) = cons_arr(ic,jc,zlo,RhoTheta_comp) - thetagrad * deltaz;
                          +
                          949  } else {
                          +
                          950  int ie, je;
                          +
                          951  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          952  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          953  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          954  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          955  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                          +
                          956  eta = amrex::max(eta,eta_eps);
                          +
                          957  // Note: Kh = eta/rho
                          +
                          958  // hfx = -Kh dT/dz ==> +ve hfx corresponds to heating from the surface
                          +
                          959  // Extrapolate from klo to ghost cell a distance of -deltaz; negative signs cancel
                          +
                          960  dest_arr(i,j,k,icomp+n) = rho*(theta + moflux*rho/eta*deltaz);
                          +
                          961  }
                          +
                          962 
                          +
                          963  return moflux;
                          +
                          964  }
                          RhoTheta_comp
                          #define RhoTheta_comp
                          Definition: IndexDefines.H:13
                          EddyDiff::Theta_v
                          @ Theta_v
                          Definition: IndexDefines.H:128
                          LsmVar_MM5::theta
                          @ theta
                          Definition: MM5.H:20
                          -
                          moeng_flux::eps
                          const amrex::Real eps
                          Definition: MOSTStress.H:1107
                          +
                          moeng_flux::eps
                          const amrex::Real eps
                          Definition: MOSTStress.H:1112
                          @@ -628,59 +633,59 @@

                          -
                          979  {
                          -
                          980  amrex::Real velx, vely, rho, eta;
                          -
                          981  int jy, ic, jc;
                          -
                          982 
                          -
                          983  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          -
                          984  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          -
                          985 
                          -
                          986  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          -
                          987  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          -
                          988 
                          -
                          989  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          -
                          990  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          -
                          991  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          992  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          984  {
                          +
                          985  amrex::Real velx, vely, rho, eta;
                          +
                          986  int jy, ic, jc;
                          +
                          987 
                          +
                          988  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                          +
                          989  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                          +
                          990 
                          +
                          991  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                          +
                          992  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                          993 
                          -
                          994  velx = velx_arr(i,j,zlo);
                          -
                          995  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          -
                          996  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          -
                          997  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          -
                          998  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          -
                          999 
                          -
                          1000  amrex::Real umean = um_arr(i,j,zlo);
                          -
                          1001  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                          -
                          1002  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                          -
                          1003 
                          -
                          1004  // Note: The surface mean shear stress is decomposed into tau_xz by
                          -
                          1005  // multiplying the modeled shear stress (rho*ustar^2) with
                          -
                          1006  // a factor of umean/wsp_mean for directionality; this factor
                          -
                          1007  // modifies the denominator from what is in Moeng 1984.
                          -
                          1008  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1009  amrex::Real num1 = wsp * umean;
                          -
                          1010  amrex::Real num2 = wsp_mean * (velx-umean);
                          -
                          1011  amrex::Real stressx = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
                          -
                          1012  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1013 
                          -
                          1014  if (exp_most) {
                          -
                          1015  // surface gradient equal to gradient at first zface
                          -
                          1016  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          -
                          1017  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          -
                          1018  } else {
                          -
                          1019  int ie, je;
                          -
                          1020  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          -
                          1021  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          -
                          1022  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1023  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1024  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          -
                          1025  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          -
                          1026  eta = amrex::max(eta,eta_eps);
                          -
                          1027  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          -
                          1028  }
                          -
                          1029 
                          -
                          1030  return stressx;
                          -
                          1031  }
                          +
                          994  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                          +
                          995  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                          +
                          996  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          997  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          998 
                          +
                          999  velx = velx_arr(i,j,zlo);
                          +
                          1000  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                          +
                          1001  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                          +
                          1002  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                          +
                          1003  + cons_arr(ic ,jc,zlo,Rho_comp) );
                          +
                          1004 
                          +
                          1005  amrex::Real umean = um_arr(i,j,zlo);
                          +
                          1006  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                          +
                          1007  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                          +
                          1008 
                          +
                          1009  // Note: The surface mean shear stress is decomposed into tau_xz by
                          +
                          1010  // multiplying the modeled shear stress (rho*ustar^2) with
                          +
                          1011  // a factor of umean/wsp_mean for directionality; this factor
                          +
                          1012  // modifies the denominator from what is in Moeng 1984.
                          +
                          1013  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1014  amrex::Real num1 = wsp * umean;
                          +
                          1015  amrex::Real num2 = wsp_mean * (velx-umean);
                          +
                          1016  amrex::Real stressx = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
                          +
                          1017  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1018 
                          +
                          1019  if (exp_most) {
                          +
                          1020  // surface gradient equal to gradient at first zface
                          +
                          1021  amrex::Real ugrad = (velx_arr(i,j,zlo+1) - velx) / (0.5*(dz+dz1));
                          +
                          1022  dest_arr(i,j,k,icomp) = velx - ugrad * deltaz;
                          +
                          1023  } else {
                          +
                          1024  int ie, je;
                          +
                          1025  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                          +
                          1026  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                          +
                          1027  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1028  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1029  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                          +
                          1030  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                          +
                          1031  eta = amrex::max(eta,eta_eps);
                          +
                          1032  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx/eta*deltaz;
                          +
                          1033  }
                          +
                          1034 
                          +
                          1035  return stressx;
                          +
                          1036  }
                          EddyDiff::Mom_v
                          @ Mom_v
                          Definition: IndexDefines.H:127
                          @@ -796,59 +801,59 @@

                          -
                          1051  {
                          -
                          1052  amrex::Real velx, vely, rho, eta;
                          -
                          1053  int ix, ic, jc;
                          -
                          1054 
                          -
                          1055  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          -
                          1056  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          -
                          1057 
                          -
                          1058  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          -
                          1059  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          -
                          1060 
                          -
                          1061  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          -
                          1062  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          -
                          1063  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          -
                          1064  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1056  {
                          +
                          1057  amrex::Real velx, vely, rho, eta;
                          +
                          1058  int ix, ic, jc;
                          +
                          1059 
                          +
                          1060  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                          +
                          1061  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                          +
                          1062 
                          +
                          1063  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                          +
                          1064  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                          1065 
                          -
                          1066  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          -
                          1067  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          -
                          1068  vely = vely_arr(i,j,zlo);
                          -
                          1069  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          -
                          1070  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          -
                          1071 
                          -
                          1072  amrex::Real vmean = vm_arr(i,j,zlo);
                          -
                          1073  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                          -
                          1074  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                          -
                          1075 
                          -
                          1076  // Note: The surface mean shear stress is decomposed into tau_yz by
                          -
                          1077  // multiplying the modeled shear stress (rho*ustar^2) with
                          -
                          1078  // a factor of vmean/wsp_mean for directionality; this factor
                          -
                          1079  // modifies the denominator from what is in Moeng 1984.
                          -
                          1080  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          -
                          1081  amrex::Real num1 = wsp * vmean;
                          -
                          1082  amrex::Real num2 = wsp_mean * (vely-vmean);
                          -
                          1083  amrex::Real stressy = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
                          -
                          1084  amrex::Real deltaz = dz * (zlo - k);
                          -
                          1085 
                          -
                          1086  if (exp_most) {
                          -
                          1087  // surface gradient equal to gradient at first zface
                          -
                          1088  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          -
                          1089  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          -
                          1090  } else {
                          -
                          1091  int ie, je;
                          -
                          1092  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          -
                          1093  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          -
                          1094  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          -
                          1095  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          -
                          1096  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          -
                          1097  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          -
                          1098  eta = amrex::max(eta,eta_eps);
                          -
                          1099  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          -
                          1100  }
                          -
                          1101 
                          -
                          1102  return stressy;
                          -
                          1103  }
                          +
                          1066  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                          +
                          1067  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                          +
                          1068  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                          +
                          1069  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                          +
                          1070 
                          +
                          1071  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                          +
                          1072  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                          +
                          1073  vely = vely_arr(i,j,zlo);
                          +
                          1074  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                          +
                          1075  + cons_arr(ic,jc ,zlo,Rho_comp) );
                          +
                          1076 
                          +
                          1077  amrex::Real vmean = vm_arr(i,j,zlo);
                          +
                          1078  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                          +
                          1079  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                          +
                          1080 
                          +
                          1081  // Note: The surface mean shear stress is decomposed into tau_yz by
                          +
                          1082  // multiplying the modeled shear stress (rho*ustar^2) with
                          +
                          1083  // a factor of vmean/wsp_mean for directionality; this factor
                          +
                          1084  // modifies the denominator from what is in Moeng 1984.
                          +
                          1085  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                          +
                          1086  amrex::Real num1 = wsp * vmean;
                          +
                          1087  amrex::Real num2 = wsp_mean * (vely-vmean);
                          +
                          1088  amrex::Real stressy = rho*ustar*ustar * (num1+num2)/(wsp_mean*wsp_mean);
                          +
                          1089  amrex::Real deltaz = dz * (zlo - k);
                          +
                          1090 
                          +
                          1091  if (exp_most) {
                          +
                          1092  // surface gradient equal to gradient at first zface
                          +
                          1093  amrex::Real vgrad = (vely_arr(i,j,zlo+1) - vely) / (0.5*(dz+dz1));
                          +
                          1094  dest_arr(i,j,k,icomp) = vely - vgrad * deltaz;
                          +
                          1095  } else {
                          +
                          1096  int ie, je;
                          +
                          1097  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                          +
                          1098  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                          +
                          1099  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                          +
                          1100  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                          +
                          1101  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                          +
                          1102  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                          +
                          1103  eta = amrex::max(eta,eta_eps);
                          +
                          1104  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy/eta*deltaz;
                          +
                          1105  }
                          +
                          1106 
                          +
                          1107  return stressy;
                          +
                          1108  }
                          @@ -897,7 +902,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          @@ -921,7 +926,7 @@

                          -

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          +

                          Referenced by compute_q_flux(), compute_t_flux(), compute_u_flux(), and compute_v_flux().

                          diff --git a/structmoeng__flux.js b/structmoeng__flux.js index f602ae557a..47d6c1e1aa 100644 --- a/structmoeng__flux.js +++ b/structmoeng__flux.js @@ -1,7 +1,7 @@ var structmoeng__flux = [ [ "moeng_flux", "structmoeng__flux.html#a2843a181e875e6599b04964c28117900", null ], - [ "compute_q_flux", "structmoeng__flux.html#aee217bd58d625b3fb9e80a9fc4e9189f", null ], + [ "compute_q_flux", "structmoeng__flux.html#a5d40e64bd085af2f4c63cfa1e9e20aa6", null ], [ "compute_t_flux", "structmoeng__flux.html#a946d89f0b1c8287c83bea9ff628bdb1e", null ], [ "compute_u_flux", "structmoeng__flux.html#a2451f21fea8f87cec2e5f626c36489cb", null ], [ "compute_v_flux", "structmoeng__flux.html#a5ec0786b043f57c8c41edfd677dde8c9", null ],

                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline
                          compute_q_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline
                          compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline
                          compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline
                          compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline
                           moeng_flux (int l_zlo)
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_q_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_t_flux (const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
                           
                          AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real compute_u_flux (const int &i, const int &j, const int &k, const int &icomp, const amrex::Real &dz, const amrex::Real &dz1, const bool &exp_most, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
                          const amrex::Real & , dz1,