diff --git a/workflow/rules/clustering.smk b/workflow/rules/clustering.smk index 5ba0ad3..50c988e 100644 --- a/workflow/rules/clustering.smk +++ b/workflow/rules/clustering.smk @@ -49,6 +49,8 @@ rule aggregate_clustering_results: aggregated_clusterings = os.path.join(config["result_path"],'unsupervised_analysis','{sample}','{method}','{method}_clusterings.csv'), log: os.path.join("logs","rules","aggregate_clustering_results_{sample}_{method}.log"), + params: + partition=config.get("partition"), run: # list to hold the individual clusterings agg_clust = [] @@ -72,6 +74,8 @@ rule aggregate_all_clustering_results: metadata_clusterings = os.path.join(config["result_path"],'unsupervised_analysis','{sample}','metadata_clusterings.csv'), log: os.path.join("logs","rules","aggregate_all_clustering_results_{sample}.log"), + params: + partition=config.get("partition"), run: # list to hold the data agg_clust = []