ITR Flexibility

[NanoporeEnthusiast]

Is your feature related to a problem?

ITR sequence does not match the expected parameters. Error output: "ValueError: ITR sequence missing 'AAA or TTT' hairpin sequence.Please check your transgene plasmid sequence and ITR location parameters"

Describe the solution you'd like

Some flexibility in ITR expectations should be allowed, especially with known rAAV ITR sequences (i.e. https://www.addgene.org/105922/)

Describe alternatives you've considered

ITR matching can be done by manual sequence input by user, rather than by feature identification

Additional context

No response

[nrhorner]

Thanks @NanoporeEnthusiast

Yes, this is something that needs addressing. Thanks for the link to that AAV sequence. I'll keep you updated on any progress.