Skip to content

Latest commit

 

History

History
49 lines (40 loc) · 2.83 KB

README.md

File metadata and controls

49 lines (40 loc) · 2.83 KB
Raw

medcodeassist-frontend

The frontend of the assistant for medical coding based on analysis of free text medical documentation

Installing guide

This section explains how to prepare your OS to run the project medcodeassist-frontend of EONUM.

Linux (Ubuntu)

Tested on Ubuntu 14.04 LTS

Install Ruby 2.2.1, Rails 4.2, RVM, Git, ...

  • Download mpapis public key: gpg --keyserver hkp://keys.gnupg.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3

If the server times out, try ``` gpg --keyserver hkp://pgp.mit.edu --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3 ``` * Install Curl: ``` sudo apt-get install curl ``` * Install ruby version manager (RVM) with rails: ```\curl -sSL https://get.rvm.io | bash -s stable --rails``` * Run ``` source /usr/local/rvm/scripts/rvm ``` * Install git: ``` sudo apt-get install git ```

Clone the git repository medcodeassist-frontend

  • Change to the directory where you want to clone the project.
  • Clone the repo: git clone https://github.com/eonum/medcodeassist-frontend.git

Install the gems

  • Make sure to run the terminal as a login-shell (Edit->Profiles->Edit->Title and Command->run command as a login shell)
  • Open a new bash
  • Change to your cloned directory: cd medcodeassist-frontend
  • Create a project-specific gemset: rvm use ruby-2.2.1@medcodeassist-frontend --ruby-version --create
  • Install the bundle: bundle install
  • In order to execute javascript in ruby, install execjs runtime gem install execjs (see link for more information)

MongoDB

  • Set up mongodb as described at this link.
  • At first use, load data in your local database to make the search work. To do this, put your data in 'db/data/json-fixtures'. Then open a terminal and cd to the project. Type rake db:seed_test_data
  • Run the database as follows: mongod --dbpath [...]/medcodeassist-frontend/db --rest
  • This will start the mongodb server at localhost:27017
  • --dbpath [...]/medcodeassist-frontend/db defines your data directory
  • --rest will provide an http interface at localhost:28017 and is optional

Run the rails server

  • To run the server in development mode at port 3000, type: rails server -p 3000
  • Open your favorite browser and go to: localhost:3000
  • To run the server in production mode, run rake assets:precompile then rails server –e production

Connecting to the API

  • Make sure you have a running and accessible API (that can be cloned from here)
  • Suppose your API runs at http://apiurl.ch
  • Configure the @@api_url in application_controller.rb to look like @@api_url = 'http://apiurl.ch/api/v1/'