Error in if (cv > 1) { : missing value where TRUE/FALSE needed message

[Dhihram]

time.data <- treedater::dater(tree, sts=sts, s = seqlen, clock ="uncorrelated", searchRoot=TRUE)
Note: Initial guess of substitution rate not provided. Will attempt to guess starting conditions. Provide initial guesses of the rate using omega0 parameter.
Note: Minimum temporal branch length (minblen) set to 0.0186331312223994. Increase minblen in the event of convergence failures.
Tree is rooted. Not estimating root position.
Initial guesses of substitution rate: 0.0223656181040256,0.0223811368102775,0.0367202750598568,0.0369537668001815,0.0510749320156881,0.0515263967900855
Error in if (cv > 1) { : missing value where TRUE/FALSE needed

I found the error message when I want to running treedater.

This is a brief of my data:

sts
WT-NORO-0324 WT-NORO-0325 WT-NORO-0326 WT-NORO-0331 WT-NORO-0693 WT-NORO-0989
2003.819 2003.816 2003.816 2003.934 2004.194 2004.934

summary(tree)

Phylogenetic tree: tree

Number of tips: 6
Number of nodes: 5
Branch lengths:
mean: 0.006128069
variance: 0.0001479546
distribution summary:
Min. 1st Qu. Median 3rd Qu. Max.
0.000000e+00 3.844413e-05 4.141834e-04 6.424393e-03 3.920875e-02
No root edge.
Tip labels: WT-NORO-0989
WT-NORO-0693
WT-NORO-0331
WT-NORO-0325
WT-NORO-0324
WT-NORO-0326
Node labels: Root
97
94
57
100

[emvolz]

Can you show the output of this?

installed.packages()['treedater', ]

If you have not installed the development version, can you try

remotes::install_github('emvolz/treedater')

[Dhihram]

installed.packages()['treedater', ]
Package
"treedater"
LibPath
"C:/Users/dhihr/AppData/Local/R/win-library/4.3"
Version
"0.5.0"
Priority
NA
Depends
"ape (>= 5.0),limSolve (>= 1.5.5.0)"
Imports
NA
LinkingTo
NA
Suggests
"lubridate,ggplot2,foreach,iterators,mgcv,knitr,rmarkdown"
Enhances
NA
License
"GPL-2"
License_is_FOSS
NA
License_restricts_use
NA
OS_type
NA
MD5sum
NA
NeedsCompilation
"no"
Built
"4.3.2"

[Dhihram]

When I try to install, this is the result

Warning messages:
1: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\dhihr\AppData\Local\R\win-library\4.3\00LOCK\digest\libs\x64\digest.dll to C:\Users\dhihr\AppData\Local\R\win-library\4.3\digest\libs\x64\digest.dll: Permission denied
2: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\dhihr\AppData\Local\R\win-library\4.3\00LOCK\Rcpp\libs\x64\Rcpp.dll to C:\Users\dhihr\AppData\Local\R\win-library\4.3\Rcpp\libs\x64\Rcpp.dll: Permission denied

[Dhihram]

I want to inform you, I have successfully installed the treedater 0.5.3