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zR*27_`44?@KK0>0#9X(~4_;mTbE}r+zq!xgKgVowB>sE<|KNXz=kP~dDTGD=rLTKc eK>vS)YIU=~BrfPmm~;X^oTz`A>K9&eiToFmzJL$_ literal 0 HcmV?d00001 diff --git a/doc/git commands.md b/doc/git commands.md new file mode 100644 index 0000000..55d9c34 --- /dev/null +++ b/doc/git commands.md @@ -0,0 +1,104 @@ +Guidelines to develop the ontology with Git and Github +========================================================== + +## Settings up your account on Github + +### Create an account + +### Add a public ssh key + +## Installing Git on your computer + +https://git-scm.com/downloads + + +## Interacting with the repository remotely + +In our collaborative work, we aim at developing the ontology in parallel. +Each participant has a local repository to make its development. The local +developments are then pushed to the remote repository to be available for all the partners. + +The main operations are described in the following sections. + +### Clone the repository + +The current version is available on GitHub so we want to copy that repository locally +to make our changes. +We will ***clone the repository*** with the following command line: +``` +git clone git@github.com:emmo-repo/domain-microstructure.git +``` + +This operation uses ssh protocols so you need to have stored your public ssh key in your profile. +It is possible to clone also with https but it is simpler with ssh. + +After that operation, you have the copy of the default branch (*main* in our case) +but also all the branches. + +### Transfer changes to the remote repository + +Git aims at tracking the changes between version. For that reason, when you have made +some changes two operations are needed: tagging and committing. Tagging will consist +in indicating which file is to be marked as changed (and so which changes will be recorded +in the repository). Committing will actually do the recording of the changes. + +Tagging is done by: ```git add name_of_file``` + +Commiting is done by: ```git commit -m "my description of the changes" ``` + +The command ```git status``` will give you an overview of the tracked files that +have been modified, the tagged files, and also of the files that are not tracked. +It also indicates on which branch you are. + +After the commit, your local repository has been updated. This update needs to +be transferred to the remote repository stored on GitHub. We need to push the changes +by: +```git push``` + +### Update your local repository + +```git fetch``` The git fetch command downloads commits from the remote repository +into your local repository to see the changes. + +```git pull``` The git pull command is used to fetch and download content from a remote repository +and immediately update the local repository to match that content. + +To avoid merging issues, it is important to pull from the remote repository before +adding new changes. + +### Branching + +Significant modifications on the code are usually done in branches. When the new feature of +the branch is developed, the branch can be merged with the main branch. + +

+ +The main commands are: + +```git branch ``` to get the list of branches. + +```git checkout name_of_branch ``` to change to an existing branch. + +```git checkout -b name_of_branch ``` to create a new branch and change to it. + +```git checkout -b name_of_branch ``` to create a new branch and change to it. + + +### Merging + +```git merge name_of_branch``` to merge the branch with your current branch. + +In case of conflicts between your changes and what has been changed since your latest +update from the remote repository, you will need to resolve the conflicts. +During merge, the files will be modified to contain both versions of the portions +of codes. You need then to select what to keep. + +More details are available here: +https://www.atlassian.com/git/tutorials/using-branches/merge-conflicts + + + + + + +