From e5b570386c13a1958d2157db6bab809f1ae1e898 Mon Sep 17 00:00:00 2001 From: emmarousseau Date: Mon, 1 Jul 2024 17:33:50 +0100 Subject: [PATCH] Two more default fields changed to examples --- src/samtools/samtools_fasta/config.vsh.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/samtools/samtools_fasta/config.vsh.yaml b/src/samtools/samtools_fasta/config.vsh.yaml index 027fc07f..9a85ab5f 100644 --- a/src/samtools/samtools_fasta/config.vsh.yaml +++ b/src/samtools/samtools_fasta/config.vsh.yaml @@ -101,7 +101,7 @@ argument_groups: Do not output alignments with any bits set in INT present in the FLAG field. INT can be specified in hex by beginning with `0x' (i.e. /^0x[0-9A-F]+/) or in octal by beginning with `0' (i.e. /^0[0-7]+/). This defaults to 0x900 representing filtering of secondary and - supplementary alignments. ["0x900"] + supplementary alignments. [0x900] example: "0x900" - name: --incl_flags alternatives: --rf @@ -153,12 +153,12 @@ argument_groups: description: write second index reads to FILE. - name: --barcode_tag type: string - description: Auxiliary tag to find index reads in. - default: BC + description: Auxiliary tag to find index reads in. [BC] + example: "BC" - name: --quality_tag type: string - description: Auxiliary tag to find index quality in. - default: QT + description: Auxiliary tag to find index quality in. [QT] + example: "QT" - name: --index_format type: string description: |