From bd1075ecdfa1800e137281ec1ae36839999958a3 Mon Sep 17 00:00:00 2001 From: emmarousseau Date: Thu, 5 Sep 2024 19:24:19 +0200 Subject: [PATCH] suggested changes, typos --- src/rsem/rsem_calculate_expression/test.sh | 4 ++-- src/rsem/rsem_calculate_expression/test_data/script.sh | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/rsem/rsem_calculate_expression/test.sh b/src/rsem/rsem_calculate_expression/test.sh index 1171e910..ee9abf9f 100644 --- a/src/rsem/rsem_calculate_expression/test.sh +++ b/src/rsem/rsem_calculate_expression/test.sh @@ -53,7 +53,7 @@ echo "> Generate index" rsem-prepare-reference \ --gtf "genes.gtf" \ "genome.fasta" \ - "index"\ + "index" mkdir index mv index.* index/ @@ -93,4 +93,4 @@ diff $test_dir/output/ref.cnt test.stat/test.cnt || { echo "Stats file is incorr ##################################################################################################### echo "All tests succeeded!" -exit 0 \ No newline at end of file +exit 0 diff --git a/src/rsem/rsem_calculate_expression/test_data/script.sh b/src/rsem/rsem_calculate_expression/test_data/script.sh index 741d1764..a5185889 100755 --- a/src/rsem/rsem_calculate_expression/test_data/script.sh +++ b/src/rsem/rsem_calculate_expression/test_data/script.sh @@ -1,6 +1,6 @@ #!/bin/bash -wget wget https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz +wget https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/reference/rsem.tar.gz wget https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/testdata/GSE110004/SRR6357070_1.fastq.gz wget https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq3/testdata/GSE110004/SRR6357070_2.fastq.gz